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Merge Peak Bed file to Granges
bed chip-seq granges written 24 days ago by wax40010 • updated 24 days ago by rpolicastro3.2k
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[GRanges] How to append query metadata to subjectHits
R bioconductor findoverlaps granges written 6 weeks ago by ekwame60 • updated 6 weeks ago by Papyrus620
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Reducing and aggregating GRanges with gaps using plyranges.
plyranges R bioconductor granges written 3 months ago by rpolicastro3.2k • updated 7 weeks ago by Biostar ♦♦ 20
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Finding overlaps between GRanges objects
peak iranges promoter chip-seq granges written 10 weeks ago by mickey_9530 • updated 9 weeks ago by Jimbou820
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Find mutations that are spatially clustered?
genome clustering granges variants written 10 months ago by Rubal330 • updated 10 months ago by bernatgel2.8k
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GenomicRanges : How to reduce a GRanges by gene
R genomicranges reduce granges written 19 months ago by Nicolas Rosewick9.3k • updated 11 months ago by ATpoint44k
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Using NCBI's genomic accession to directly load GRanges in R
ncbi R granges written 17 months ago by guedes.aureliano0 • updated 16 months ago by Biostar ♦♦ 20
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Removing overlaps in GRange function
iranges R granges firebrowse raster written 2.3 years ago by jmw7300 • updated 2.3 years ago by zx87549.9k
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5 follow
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Calculate distances between items in different GRanges
R bioconductor granges written 4.0 years ago by igor12k • updated 2.5 years ago by zx87549.9k
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Clustering coordinates based on window size
iranges R genomicranges granges written 2.7 years ago by user_g20 • updated 2.7 years ago by Alex Reynolds31k
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Detecting Overlaps within Grange Object
R genomicranges granges written 2.8 years ago by user_g20 • updated 2.8 years ago by d-cameron2.3k
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Is possible to convert BSgenome object to GRange?
bsgenome granges written 3.0 years ago by Lila M 870 • updated 3.0 years ago by Devon Ryan98k
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5 follow
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How to save GRanges object to csv file
export granges written 3.4 years ago by akij100 • updated 3.4 years ago by Charles Plessy2.7k
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Add GenomicRanges to SummarizedExperiment
deseq2 summarizedexperiment granges written 4.0 years ago by s.w.vanderlaan40 • updated 3.6 years ago by WouterDeCoster45k
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Mapping from cDNA coordinates to genomic space
cdna genomicfeatures granges transcript written 3.9 years ago by longoka40 • updated 3.8 years ago by Biostar ♦♦ 20
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warning trying to create a TxDB for S.pombe
txdb chipseeker pombe granges metadata written 3.9 years ago by Lila M 870 • updated 3.9 years ago by ddiez1.9k
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Get upstream and downstream intergenic regions in R
R granges intergenic written 4.3 years ago by greentailedmouse50 • updated 4.3 years ago by ddiez1.9k
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Problems with GRanges promoter list for EnrichedHeatmap
R bioconductor enrichedheatmap chip-seq granges written 4.5 years ago by Anwesha_Ghosh10 • updated 4.5 years ago by zwdzwd120
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GRanges intersect operation
granges written 4.5 years ago by bsmith030465150
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