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Find mutations that are spatially clustered?
genome clustering granges variants written 6 months ago by Rubal330 • updated 6 months ago by bernatgel2.6k
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Using NCBI's genomic accession to directly load GRanges in R
ncbi R granges written 13 months ago by guedes.aureliano0 • updated 12 months ago by Biostar ♦♦ 20
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GenomicRanges : How to reduce a GRanges by gene
R genomicranges reduce granges written 15 months ago by Nicolas Rosewick9.0k • updated 6 months ago by ATpoint38k
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Removing overlaps in GRange function
iranges R granges firebrowse raster written 23 months ago by jmw7300 • updated 23 months ago by zx87549.6k
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Clustering coordinates based on window size
iranges R genomicranges granges written 2.4 years ago by user_g20 • updated 2.4 years ago by Alex Reynolds30k
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Detecting Overlaps within Grange Object
R genomicranges granges written 2.4 years ago by user_g20 • updated 2.4 years ago by d-cameron2.2k
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Is possible to convert BSgenome object to GRange?
bsgenome granges written 2.7 years ago by Lila M 820 • updated 2.7 years ago by Devon Ryan96k
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How to save GRanges object to csv file
export granges written 3.1 years ago by akij100 • updated 3.1 years ago by Charles Plessy2.7k
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warning trying to create a TxDB for S.pombe
txdb chipseeker pombe granges metadata written 3.5 years ago by Lila M 820 • updated 3.5 years ago by ddiez1.9k
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Mapping from cDNA coordinates to genomic space
cdna genomicfeatures granges transcript written 3.5 years ago by longoka40 • updated 3.5 years ago by Biostar ♦♦ 20
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Calculate distances between items in different GRanges
R bioconductor granges written 3.7 years ago by igor11k • updated 2.2 years ago by zx87549.6k
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Add GenomicRanges to SummarizedExperiment
deseq2 summarizedexperiment granges written 3.7 years ago by s.w.vanderlaan40 • updated 3.3 years ago by WouterDeCoster44k
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Get upstream and downstream intergenic regions in R
R granges intergenic written 3.9 years ago by greentailedmouse50 • updated 3.9 years ago by ddiez1.9k
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Problems with GRanges promoter list for EnrichedHeatmap
R bioconductor enrichedheatmap chip-seq granges written 4.2 years ago by Anwesha_Ghosh10 • updated 4.2 years ago by zwdzwd120
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GRanges intersect operation
granges written 4.2 years ago by bsmith030465150
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HOWTO extract regions from GRanges object
iranges R genomicranges granges subsetting written 4.7 years ago by Assa Yeroslaviz1.4k • updated 4.7 years ago by geek_y11k
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