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Reducing and aggregating GRanges with gaps using plyranges.
plyranges R bioconductor granges written 8 weeks ago by rpolicastro2.3k • updated 2 days ago by Biostar ♦♦ 20
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Finding overlaps between GRanges objects
peak iranges promoter chip-seq granges written 19 days ago by mickey_9530 • updated 19 days ago by Jimbou800
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Find mutations that are spatially clustered?
genome clustering granges variants written 8 months ago by Rubal330 • updated 8 months ago by bernatgel2.8k
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GenomicRanges : How to reduce a GRanges by gene
R genomicranges reduce granges written 17 months ago by Nicolas Rosewick9.2k • updated 9 months ago by ATpoint42k
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Using NCBI's genomic accession to directly load GRanges in R
ncbi R granges written 15 months ago by guedes.aureliano0 • updated 15 months ago by Biostar ♦♦ 20
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Removing overlaps in GRange function
iranges R granges firebrowse raster written 2.1 years ago by jmw7300 • updated 2.1 years ago by zx87549.7k
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Calculate distances between items in different GRanges
R bioconductor granges written 3.9 years ago by igor11k • updated 2.4 years ago by zx87549.7k
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Clustering coordinates based on window size
iranges R genomicranges granges written 2.6 years ago by user_g20 • updated 2.6 years ago by Alex Reynolds31k
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Detecting Overlaps within Grange Object
R genomicranges granges written 2.6 years ago by user_g20 • updated 2.6 years ago by d-cameron2.3k
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Is possible to convert BSgenome object to GRange?
bsgenome granges written 2.9 years ago by Lila M 860 • updated 2.9 years ago by Devon Ryan97k
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How to save GRanges object to csv file
export granges written 3.3 years ago by akij100 • updated 3.3 years ago by Charles Plessy2.7k
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Add GenomicRanges to SummarizedExperiment
deseq2 summarizedexperiment granges written 3.9 years ago by s.w.vanderlaan40 • updated 3.5 years ago by WouterDeCoster44k
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Mapping from cDNA coordinates to genomic space
cdna genomicfeatures granges transcript written 3.8 years ago by longoka40 • updated 3.7 years ago by Biostar ♦♦ 20
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warning trying to create a TxDB for S.pombe
txdb chipseeker pombe granges metadata written 3.7 years ago by Lila M 860 • updated 3.7 years ago by ddiez1.9k
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Get upstream and downstream intergenic regions in R
R granges intergenic written 4.1 years ago by greentailedmouse50 • updated 4.1 years ago by ddiez1.9k
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Problems with GRanges promoter list for EnrichedHeatmap
R bioconductor enrichedheatmap chip-seq granges written 4.4 years ago by Anwesha_Ghosh10 • updated 4.4 years ago by zwdzwd120
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GRanges intersect operation
granges written 4.4 years ago by bsmith030465150
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HOWTO extract regions from GRanges object
iranges R genomicranges granges subsetting written 4.9 years ago by Assa Yeroslaviz1.4k • updated 4.9 years ago by geek_y11k
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