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Venn Diagrams with labels

eulerovenn genes R rna-seq graphics written 7 days ago by lenC_biotecLover • 20 • updated 7 days ago by nimojose • 0

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10k

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problem with installation of package ggplot2

R plot pakage graphics written 5.4 years ago by sithara.ep • 10 • updated 4 months ago by _r_am ♦ 32k

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213

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Go plots in Blast2go

interproscan go terms blast2go graphics written 14 months ago by caro-ca • 20

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21k

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43 follow

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Tutorial: How to create a mutation landscape (waterfall) plot with GenVisR

R bioconductor graphics tutorial genvisr written 4.9 years ago by Obi Griffith ♦ 19k • updated 2.4 years ago by avelarbio46 • 10

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4.1k

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Plotting traits on phylogenetic tree in R - issue with aligning traits

traits R phylogenetic tree graphics written 5.7 years ago by ch_at • 10 • updated 2.6 years ago by Biostar ♦♦ 20

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2.8k

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Publication-Quality Multiple Sequence Alignment

image graphics quality msa publication written 3.6 years ago by l.souza • 70

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10k

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Tutorial: How to create a mutation lolliplot with GenVisR

graphics bioconductor tutorial R genvisr written 4.6 years ago by Obi Griffith ♦ 19k • updated 4.4 years ago by mia1260 • 0

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1.1k

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Poster quality images of gapped read alignment

graphics tophat rna-seq images written 4.8 years ago by onspotproductions • 140 • updated 4.8 years ago by WouterDeCoster ♦ 45k

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Recent Replies

C: Assigning subject to query based on coverage from blast output file by Prakki Rama • 2.4k
Another small correction after 2.5 years: The blast results are one-based coordinate system but...
C: Combine two VCF files with GATK4 by svp • 300
`MergeVcfs` of `gatk` will not work with different entries
A: Combine two VCF files with GATK4 by svp • 300
Try using snpsift `java -jar SnpSift.jar split -j *.vcf > combined.vcf`
C: Combine two VCF files with GATK4 by MAPK • 1.7k
`bcftools` works. Thank you.
C: Combine two VCF files with GATK4 by dare_devil • 630
you can try a python package `bioinfokit` to deal with this from bioinfokit.analys import ma...
C: Combine two VCF files with GATK4 by devarora • 260
did you tried bcftools merge option also?
C: Combine two VCF files with GATK4 by MAPK • 1.7k
@devarora they (MergeVcfs) both are same, either you use via GATK or Picard. I get the same error.
A: Remove invariant sites from large MSA by Mensur Dlakic • 8.1k
[**BMGE**][1] is an entropy-based method that will automatically select the columns that are most...
A: Combine two VCF files with GATK4 by devarora • 260
You may need to use picard tool to merge files. java -jar path_to_picard.jar MergeVcfs I=fi...
C: How do we deal with `MIXED` type variants in VQSR mode of Variant filtering ? by svp • 300
If you look into the [this][1] tutorial `Note that mixed records are treated as indels.` [1]:...
C: Combine two VCF files with GATK4 by MAPK • 1.7k
@dare_devil The samples in file1.vcf.gz and file2.vcf.gz are different (like I said, this is wha...
A: Combine two VCF files with GATK4 by dare_devil • 630
`MergeVcfs` from gatk should work (gatk v4.1.1) gatk --java-options '-Xmx60g' \ MergeVcf...

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