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Tutorial: How to create a mutation landscape (waterfall) plot with GenVisR

R bioconductor graphics tutorial genvisr written 3.4 years ago by Obi Griffith ♦ 18k • updated 11 months ago by avelarbio46 • 0

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Plotting traits on phylogenetic tree in R - issue with aligning traits

traits R phylogenetic tree graphics written 4.2 years ago by ch_at • 10 • updated 13 months ago by Biostar ♦♦ 20

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Publication-Quality Multiple Sequence Alignment

image graphics quality msa publication written 2.1 years ago by l.souza • 70

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7.5k

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Tutorial: How to create a mutation lolliplot with GenVisR

graphics bioconductor tutorial R genvisr written 3.1 years ago by Obi Griffith ♦ 18k • updated 2.9 years ago by mia1260 • 0

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Poster quality images of gapped read alignment

graphics tophat rna-seq images written 3.3 years ago by onspotproductions • 140 • updated 3.3 years ago by WouterDeCoster ♦ 40k

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9.1k

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problem with installation of package ggplot2

myposts R pakage graphics plot written 3.9 years ago by sithara.ep • 10 • updated 3.9 years ago by Charles Plessy • 2.7k

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Recent Replies

A: How to get vcf not from g.vcf? by Pierre Lindenbaum ♦ 121k
> I know that g.vcf is including vcf in it but is it possible to get vcf not from g.vcf? remo...
C: basename: missing operand by evelyn • 30
`echo ${INPUT_FILE_ONE}` gives what I need. Can you please provide the `SAMPLE` line then. I stil...
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This would work only where a submitter is willing to start with samples not ready to run librarie...
C: Multiple plots outputs using for loop in R by b.d237 • 120
Many thanks Prakash!!
A: Multiple plots outputs using for loop in R by Prakash • 1.3k
The loop you are running will generate plot but will not save anything . I have modified the cod...
C: Is it possible to detect lncRNA in a de novo assembled genome? by Reza • 0
Hi Wouter, I assembled the raw reads into transcripts (contigs) and used it as reference genome.
C: Is it possible to detect lncRNA in a de novo assembled genome? by Reza • 0
Thank you for your answer.
C: differences between Illumina Platinum Variant Calls and NIST variant calls by kspata • 50
I have edited my post. Thank you !!
C: Multiple 'plotEnrichments' using loop in R by b.d237 • 120
Hi Ram, Yes I am using R studio. To test that theory I placed outfile="/Users/b/Desktop/...
C: differences between Illumina Platinum Variant Calls and NIST variant calls by RamRS ♦ 22k
Please see https://www.biostars.org/p/309884/ to add your images properly. You need **the direct ...
C: Multiple 'plotEnrichments' using loop in R by RamRS ♦ 22k
I'd think that this code is writing to the same device in such quick succession that you don't ge...
C: sort and merge fasta files by chromosome number by woojoy14 • 0
Thank you very much!

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