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Tutorial: How to create a mutation landscape (waterfall) plot with GenVisR

R bioconductor graphics tutorial genvisr written 2.2 years ago by Obi Griffith ♦ 16k

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718

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Publication-Quality Multiple Sequence Alignment

image graphics quality msa publication written 11 months ago by l.souza • 60

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Tutorial: How to create a mutation lolliplot with GenVisR

graphics bioconductor tutorial R genvisr written 23 months ago by Obi Griffith ♦ 16k • updated 21 months ago by mia1260 • 0

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Poster quality images of gapped read alignment

graphics tophat rna-seq images written 2.1 years ago by onspotproductions • 120 • updated 2.1 years ago by WouterDeCoster ♦ 28k

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7.6k

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problem with installation of package ggplot2

myposts R pakage graphics plot written 2.7 years ago by sithara.ep • 10 • updated 2.7 years ago by Charles Plessy • 2.5k

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2.5k

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Plotting traits on phylogenetic tree in R - issue with aligning traits

traits R phylogenetic tree graphics written 3.0 years ago by ch_at • 10

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Recent Replies

A: barplot in R by Kevin Blighe ♦ 19k
Works for me, after I modify your variable names. It is absolutely never a good idea to use spac...
C: Making a living with bioinformatics by genomax ♦ 48k
You should give academia a second chance. Your academic experience seems to be limited to post-do...
C: How to make a PCA plot to check similar samples between two cohorts? by Bioinfo • 190
No, I'm not using any GEO data. It is my own data. As rma() is not working for the matrix, I used...
C: How to make a PCA plot to check similar samples between two cohorts? by Kevin Blighe ♦ 19k
I have also added a sort of disclaimer to my original answer, which you may want to take into acc...
C: How to make a PCA plot to check similar samples between two cohorts? by Kevin Blighe ♦ 19k
Your microarray data is therefore most likely already on the log2 scale, i.e., if you have downlo...
C: How to merge chr+strand+coordinate+score from multiple files? by finswimmer • 2.1k
Hello, are the coordinates in every file the same or do they differ? fin swimmer
C: Convert blast tabular output to bed format by Denis • 30
I've manually checked blast output and corresponding query sequences. So, blast definitely uses 1...
A: How to merge chr+strand+coordinate+score from multiple files? by Alex Reynolds ♦ 24k
Make forward-stranded BED for each of N (~50) files: $ awk -vOFS="\t" '($2 == "+"){ print $1...
C: Need help debugging Circos output. by WouterDeCoster ♦ 28k
As already suggested by https://www.biostars.org/u/37605/ I added code markup to your post for in...
C: barplot in R by WouterDeCoster ♦ 28k
I added code markup to your post for increased readability. You can do this by selecting the text...
C: How to merge chr+strand+coordinate+score from multiple files? by Chirag Nepal • 2.0k
You can use "**bedtools groupby**" command. Show some example files, will behelpfulr to get preci...
C: Need help debugging Circos output. by finswimmer • 2.1k
Hello maxwells_daemon, please use the code button (the one wit 101 010) to format your output. T...

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