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Recent Replies
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C: How to do Clariom D Human analysis for 3 groups in R? by
Kevin Blighe ♦ 43k
Hey, you can use *biomaRt* to automate the lookup of each gene's 'biotype'. Here is an example: ...
-
C: Mapping exonic sequences across species by
Eric Lim • 1.4k
Between human and mouse, the published set is generally good enough. As the third-codon position ...
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C: PhD: Research interest or better program? by
jrj.healey ♦ 12k
I would argue that unless you want to make your research career focus a specific organism, the fu...
-
C: Removing homozygous reference genotypes from multi-sample vcf file by
genomax ♦ 68k
> Our admin must install Pierre's tool on the cluster to test it As long as you have java ins...
-
C: How to do Clariom D Human analysis for 3 groups in R? by
jiamacro • 10
Sorry for so late to replay. Your suggestion is very useful! Now I have the differential express...
-
C: Removing homozygous reference genotypes from multi-sample vcf file by
finswimmer ♦ 11k
For me this does not sound surprisingly. If you have no sample within 1200 samples, which is hom...
-
C: Perform one basecommand fot multiple files and get output for each file in CWL by
mariafirulevabio • 0
Dear Tom, Thanks for the advice. I have decided to realize the first strategy from your list. ...
-
A: Mapping exonic sequences across species by
genomax ♦ 68k
MGI has already done this for human/mouse. Take a [look here][1]. [NCBI Homologene][2]/[Ensembl ...
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C: PhD: Research interest or better program? by
genomax ♦ 68k
> Would it be wiser to use this opportunity to make a big transition to > human biology? Y...
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C: How to detect CNV with panel sequencing? by
lffu_0032 • 30
for panel sequencing, how to adjust the XHMM parameters properly？and why "2 for mean number of ta...
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C: Issue wiht pseudogenes in bacteria genome by
genomax ♦ 68k
See @h.mon's answer in this thread: https://www.biostars.org/p/334870/
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C: How to detect CNV with panel sequencing? by
lffu_0032 • 30
can you give more details about the algorithms in CC2?
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