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Genetic Risk Score (GRS)/ OR values

gwas grs snp written 4.6 years ago by Juliana • 30 • updated 4 months ago by ysx0226 • 0

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737

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How to calculate Polygenic Risk Score from Summary Results with Z-Score only

z-score prs grs polygenic risk score risk score written 9 months ago by AnnaStieber • 0 • updated 8 months ago by Sam • 2.4k

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Allelic scoring in PLINK

score grs prs plink written 8 months ago by lee.stopak • 10

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2.2k

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Genetic rsisk score, polygenic risk score

grs prs written 3.5 years ago by J.F.Jiang • 750 • updated 23 months ago by bikash.k • 0

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Recent Replies

A: error message using Kraken: does not contain necessary file taxo.k2d by mcs • 0
I repeated the 2nd build; Database construction complete. [Total: 8m36.591s] (bioinfo) mcs@pop-o...
C: Small demo bioinformatics workflows which don't require reference data? by Sam • 2.4k
We have a small demonstration for polygenic risk score analysis. We simulated data using the 1000...
C: RColorBrewer for annotations in ComplexHeatmap by fmarchildo • 0
Thanks for your help RamRS. I think that wouldn't work because the col argument of HeatmapAnnotat...
A: RColorBrewer for annotations in ComplexHeatmap by fmarchildo • 0
Thanks for your help RamRS. I think that wouldn't work because the col argument of HeatmapAnnotat...
C: How to convert vcf format with 0/0 0/1 1/1 to SNP by aman-coasab • 0
Hi, I am working on poplyploid crop and my VCF file have SNP data as 0/2, 1/2, 0/3, 2/3 etc in ad...
C: Is it necessary to do FastQC before using RSEM? by igor ♦ 8.2k
It really depends on the dataset. I have experimented with read trimming before STAR. Most of the...
A: variant calling using pseudoaligners by igor ♦ 8.2k
> I was wondering whether anybody has done any work with using > pseudoaligners such as Sal...
C: Samtools view Exec format error Help by aman-coasab • 0
Hi ATpoint My read length is greater is around 130bp. I have not tried bwa mem with that. But I w...
C: Samtools view Exec format error Help by aman-coasab • 0
Hi WouterDeCoster! I did check with my commands and bwa aln actually created .sai file. This .sai...
C: Multiple alignment software by Joe ♦ 14k
Agreed none of the alignments are very good. I also tested mafft and that didn’t produce great re...
C: Coloring nucleotide sequences according to their GC content by mschmid • 90
The idea is, to have for example three colours: 1) Red for let's say GC below 30 and and GC above...
C: Qiime2 - make table.gza by agata88 • 790
Hi, I was, but somehow I missed it. Thanks a lot! Best, Agata

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