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<prev • 73 results • page 1 of 3 • next >
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GSEA produces too few enriched sets
kallisto gsea transcriptome written 5 days ago by crimsontabaq • 30 • updated 5 days ago by kristoffer.vittingseerup • 100
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1
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77
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How to perform GSEA analysis with survival phenotype?
gsea survival written 14 days ago by blairzxy • 20 • updated 13 days ago by Sean Davis ♦ 23k
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86
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GSEA signal strength
gsea written 21 days ago by Tom_L • 180
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81
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Differential analysis of functional enrichments
go gsea written 4 weeks ago by russhh • 2.4k
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205
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5 follow
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GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathway R rna-seq gsea gage written 7 weeks ago by snishtala03 • 0 • updated 4 weeks ago by bigmawen • 220
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166
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GVSA: problem with gene identifier
gvsa rna-seq gsea written 9 weeks ago by cmgraef • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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124
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1
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An enriched gene in GSEA
gsea written 8 weeks ago by kanwarjag • 750 • updated 8 weeks ago by h.mon ♦ 6.6k
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233
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1
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How to prepare .gct file for GSEA software?
next-gen gsea sequencing written 4 months ago by zekunmu • 0 • updated 4 months ago by WouterDeCoster ♦ 19k
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135
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Help! GSEA with all data (no threshold?)
microarray gsea written 4 months ago by jenna.anderson • 0
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1
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273
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1
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Alternatives to Gene Set Enrichment Analysis dedicated for single samples
gene set enrichment analysis gsea written 5 months ago by m_o • 130 • updated 5 months ago by sysbiocoder • 150
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378
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1
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Design for GSVA - gene set enrichment analysis
enrichment gsva gsea lmfit regression written 5 months ago by mforde84 • 560
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2
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390
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2
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GSEA for organisms with no GO terms?
gsea go written 11 months ago by peter pfand • 60 • updated 5 months ago by anne.de.jong • 0
1
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1
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217
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1
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K-S null hypothesis for GSEA
gsea written 5 months ago by mubangafchama • 10 • updated 5 months ago by Jean-Karim Heriche ♦ 11k
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1
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347
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1
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GSEA blue and pink o'gram - how are they plotted?
gsea written 10 months ago by Genosa • 90 • updated 6 months ago by janders8 • 10
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360
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GSEA preranked list, values with same rank?
gsea written 7 months ago by janders8 • 10 • updated 7 months ago by tangming2005 • 2.1k
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2
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366
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2
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GSEA genesets postiively enriched in positive phenotype are necessarily negatively enriched in the negative phenotype?
gsea written 7 months ago by liu.huand • 0 • updated 7 months ago by fanli.gcb • 590
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1
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468
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1
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GSEA for qPCR data
go qpcr gsea written 15 months ago by peter pfand • 60 • updated 8 months ago by Biostar ♦♦ 20
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1
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271
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1
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Trimming redundant gene sets after gsea analysis
term reduction gsea go analysis written 8 months ago by fizer • 20 • updated 8 months ago by assaron • 30
1
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418
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GSEA heatmap for all genes?
heat map rna gsea rna-seq written 8 months ago by pat.longjump • 0
6
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1
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388
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1
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Is there an over representation for cancer processes in pathway databases (e.g. IPA) - can this be reasonably adjusted?
pathway enrichment gsea go cancer written 9 months ago by dr.michael.r.barnes • 40 • updated 9 months ago by Dan Gaston ♦ 6.8k
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3
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GAGE - eg2sym (ID conversion)
gage kegg gsea rna-seq written 10 months ago by mbk0asis • 200 • updated 9 months ago by Guangchuang Yu • 1.5k
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579
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Help interpreting a published figure that mixes GSEA and KEGG pathway analysis
kegg gsea written 12 months ago by JP • 0 • updated 9 months ago by Biostar ♦♦ 20
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519
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Interpret GSEA results
pathway next-gen rna-seq gsea written 10 months ago by Ron • 580
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452
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Gene Set Enrichment Analysis using Variant Density instead of Expression levels?
R density gsea enrichment written 12 months ago by anp375 • 80 • updated 10 months ago by Biostar ♦♦ 20
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509
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1
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generating CLS file for GSEA from Cuffdiff output
differential expression rna-seq gsea written 13 months ago by onspotproductions • 110 • updated 10 months ago by BioNinja • 0
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Tool: clusterProfiler: an R package for comparing biological themes among gene clusters
tool kegg clusterprofiler R gsea go written 11 months ago by Guangchuang Yu • 1.5k
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Tool: Plotting GSEA output in R
javagsea plot tool rna-seq gsea written 10 months ago by t.kuilman • 280
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601
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Tool: DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
tool dose R bioconductor visualization gsea written 11 months ago by Guangchuang Yu • 1.5k
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610
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difference between GSEA and Gene Ontology
gene ontology gsea rna-seq written 11 months ago by GHanumanth404 • 0 • updated 11 months ago by russhh • 2.4k
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Simplest way to perform GSEA from a weighted list of entrez gene ids
enrichment transcriptomics gsea written 11 months ago by rachel.cavill • 20 • updated 11 months ago by assaron • 30
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