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GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
macs2 chip-seq gsea written 9 days ago by dariasc0 • updated 9 days ago by alserg390
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106
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CPM or TPM in GSEA analysis
rna-seq gsea written 16 days ago by francesca30 • updated 10 days ago by kristoffer.vittingseerup3.0k
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173
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7 follow
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GSEA PreRanked lists from DESeq2 results table
fgsea deseq2 gsea preranked written 15 days ago by Assa Yeroslaviz1.3k • updated 13 days ago by jomo018540
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107
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176
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RNA Seq data with GSEA
voom vsn rna-seq gsea written 28 days ago by pennakiza50 • updated 28 days ago by Gordon Smyth1.4k
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110
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252
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5 follow
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How to visualize GSEA results in a graph using R
R rna-seq gsea written 9 weeks ago by francesca30 • updated 9 weeks ago by zhao0330
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98
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154
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Help with converting gene symbols to gene IDs
R gsea written 10 weeks ago by nattzy9410 • updated 10 weeks ago by Ahill1.8k
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127
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Pathway enrichment analysis for a small set of genes
pathway enrichment analysis gsea gene signature written 10 weeks ago by Raheleh130 • updated 10 weeks ago by dsull900
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6 follow
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fGSEA result to csv
fgsea rna-seq gsea written 11 weeks ago by mbk0asis510 • updated 11 weeks ago by alserg390
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Gene Set Enrichment Analysis using Variant Density instead of Expression levels?
R density gsea enrichment written 3.7 years ago by anp375170 • updated 12 weeks ago by Biostar ♦♦ 20
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163
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GSEA preranked analysis for unsigned/one-sided gene rankings?
fgsea one-sided gsea preranked unsigned written 3 months ago by keith.hughitt270 • updated 12 weeks ago by Biostar ♦♦ 20
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Functional annotation of pathways in a genelist
gene annotation pathway analysis gsea enrichment written 3 months ago by tejas_j0 • updated 3 months ago by hibernicah20
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Functional analysis of RNASeq differentially expressed genes
camera rna-seq ipa gsea limma written 3 months ago by Colari1940 • updated 3 months ago by h.mon29k
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174
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relevance of GSEA on Nanostring ncounter gene expression data ?
nanostring gsea written 3 months ago by guillaume.rbt770 • updated 3 months ago by i.sudbery7.0k
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103
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java-GSEA rank gene list problem
gsea written 3 months ago by MatthewP390
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240
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177
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Gene Set Enrichment Analysis
enrichment analysis modules gsea written 4 months ago by XBria60 • updated 4 months ago by Kevin Blighe54k
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Gene Set Enrichment Analysis
R gsea rna-seq written 4 months ago by ugurcabuk20
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5 follow
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Bonferroni multiple corrections question
scrna-seq rna-seq gsea statistics written 4 months ago by jevanveen20 • updated 4 months ago by dsull900
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Are singscore scores comparable between gene sets?
genesets gsva gsea subtypes singscore written 11 months ago by Pietro100 • updated 4 months ago by vikram56j0
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156
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GSEA preranked heatmap?
gsea heatmap written 4 months ago by ystokar0
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249
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1
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GSEA for paired RNA-Seq data
rna-seq gsea written 4 months ago by bjeremy 0 • updated 4 months ago by kristoffer.vittingseerup3.0k
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