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<prev • 210 results • page 1 of 7 • next >
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Using gene expression data (log2 fold change) to analyze enrichment test with GSEA
log2foldchange rna-seq gsea written 1 day ago by sslimb95 • 0
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228
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ssGSEA vs GSEA pre-ranked & correlation analyses?
ssgsea rna-seq gsea written 9 weeks ago by :) • 0 • updated 8 days ago by Biostar ♦♦ 20
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71
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1
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GSEA Positional Gene sets for mouse chromosomes
geneset mouse chromosome cytogenetic band gsea written 9 days ago by mmalumbresm • 0 • updated 9 days ago by Gordon Smyth • 1.7k
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171
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Mageck pathway command output error
pathway mageck gsea written 11 weeks ago by Swimming bird • 20 • updated 12 days ago by Biostar ♦♦ 20
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1
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91
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1
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Error in GSEA function of clusterProfiler on R
R gsea rstudio rna-seq written 12 days ago by j.thomas93 • 0 • updated 12 days ago by jared.andrews07 ♦ 6.1k
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GSEA expression dataset error update
de rna-seq gsea written 16 days ago by mahejabeen.nidhi • 10 • updated 16 days ago by Kevin Blighe ♦ 61k
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5 follow
1
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fGSEA with preranked data based off gene expression using DeSeq2
fgsea R deseq2 rna-seq gsea written 22 days ago by jack.henry • 30
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1
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150
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5 follow
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fgsea nMoreExtreme meaning
fgsea R rna-seq gsea written 22 days ago by jack.henry • 30 • updated 21 days ago by weichengz • 0
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178
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Direction in GSEA in clusterProfiler
R rna-seq gsea written 9 weeks ago by evcon • 10 • updated 26 days ago by ugurcabuk • 110
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147
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1
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GSEA analysis error
gsea rna-seq written 27 days ago by marco • 10 • updated 26 days ago by Danielle B • 10
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111
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Mapping symbols to ensembl Ids using mapIds() - returning NA, multiVals and what to do with Human Alternative sequence Genes
R tcga rna-seq gsea ensembl written 4 weeks ago by jack.henry • 30
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153
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gene-to-GO mappings with topGO gene set enrichment analysis
R topgo gsea gen to go mapping written 7 weeks ago by jose.wo • 0 • updated 4 weeks ago by Kevin Blighe ♦ 61k
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KEGG database for GSEA
enrichment-pathway analysis kegg gsea rna-seq written 4 weeks ago by kousi31 • 10
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181
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1
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How to create a GSEA enrichment plot for the phenotypes in R?
R rna-seq gsea lncrna written 6 weeks ago by newbie • 70 • updated 6 weeks ago by Barry Digby • 400
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1
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125
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1
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How to subset DESeq2 results
deseq2 gsea written 8 weeks ago by DataFanatic • 230 • updated 8 weeks ago by igor ♦ 11k
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How to prepare .gct file for GSEA software?
next-gen gsea sequencing written 3.4 years ago by zekunmu • 0 • updated 9 weeks ago by Barry Digby • 400
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94
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Pathways enriched across multiple transcriptomics datasets?
gene R rna-seq gsea written 11 weeks ago by kakukeshi • 50
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1
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181
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1
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GSEA analysis RNA-seq data
pathway gene ontology rna-seq gsea written 12 weeks ago by marco • 10 • updated 12 weeks ago by genomax ♦ 85k
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2
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187
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2
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GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
macs2 chip-seq gsea written 4 months ago by sonark • 10
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164
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1
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Can I run GSEA on a subset of genes
gsea rna-seq written 3 months ago by huangweiping.official • 0 • updated 3 months ago by ATpoint ♦ 36k
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Gene Set Enrichment Analysis of RNA-seq data based on prokka annotated genomes
cog gsea prokka rna-seq written 3 months ago by viktorht • 0 • updated 3 months ago by Asaf ♦ 8.0k
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498
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Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by DESeq2 and edgeR packages
egsea deseq2 rna-seq gsea edger written 10 months ago by F. Golestan • 60 • updated 4 months ago by Biostar ♦♦ 20
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191
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1
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Standard GSEA and RNA-seq data
gsea rna-seq written 4 months ago by pennakiza • 50 • updated 4 months ago by Kevin Blighe ♦ 61k
1
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1
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182
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1
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Whats best practice for Gene set enrichment analysis?
gsea written 4 months ago by caggtaagtat • 1.0k • updated 4 months ago by EagleEye ♦ 6.6k
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CPM or TPM in GSEA analysis
rna-seq gsea written 4 months ago by francesca3 • 20 • updated 4 months ago by kristoffer.vittingseerup • 3.3k
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735
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7 follow
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GSEA PreRanked lists from DESeq2 results table
fgsea deseq2 gsea preranked written 4 months ago by Assa Yeroslaviz • 1.3k • updated 4 months ago by jomo018 • 580
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Why do some gene set enrichment services do not ask for a background data set
enrichr panther gsea gorilla written 5 months ago by K.patel5 • 30
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320
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RNA Seq data with GSEA
voom vsn rna-seq gsea written 5 months ago by pennakiza • 50 • updated 5 months ago by Gordon Smyth • 1.7k
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how to create -gct and .cls files from RNASeq counts?
.gct deseq2 gsea .cls rna-seq written 5 months ago by annamariabugaj • 0
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9 follow
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Tool: MSigDB for Multiple Organisms in a Tidy Data Format
msigdb pathways tool gsea R written 2.2 years ago by igor ♦ 11k
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