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<prev • 152 results • page 1 of 6 • next >
2
votes
1
answer
74
views
1
answer
Preranked GSEA statistics
gsea written 17 days ago by elb • 160 • updated 14 days ago by assaron • 180
1
vote
1
answer
319
views
1
answer
View gene list in GAGE enriched terms
gene ontology gsea gage written 13 months ago by mbk0asis • 420 • updated 24 days ago by giderk • 0
1
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0
answers
75
views
0
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Max/min value of enrichment score
gsea written 25 days ago by runningonempty • 10
0
votes
0
answers
74
views
0
answers
How to get wikipathways without disease and cancer ontologies?
wikipathways gene ontology rna-seq gsea written 6 weeks ago by Gabriel • 20
0
votes
0
answers
117
views
0
answers
Gene Set Enrichment Analysis
gsea written 7 weeks ago by sana777munquad • 0
2
votes
1
answer
232
views
1
answer
What is the best way to rank genes for GSEA?
gene ranking gsea go rna-seq written 8 weeks ago by Gabriel • 20 • updated 8 weeks ago by Pietro • 50
0
votes
0
answers
136
views
0
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module membership (kME) versus NES (normalized enrichment score) from GSEA
gsea written 8 weeks ago by anamaria • 40
0
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0
answers
196
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0
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GSEA using clusterProfiler
software error clusterprofiler gsea written 9 weeks ago by dxc008263 • 0
0
votes
0
answers
170
views
0
answers
Clusterprofiler with a set of GO Terms
go term visualization clusterprofiler gsea written 11 weeks ago by babji2318 • 0
0
votes
0
answers
120
views
0
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Are singscore scores comparable between gene sets?
genesets gsva gsea subtypes singscore written 3 months ago by Pietro • 50
0
votes
0
answers
148
views
0
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"Manual" enrichment analysis of gene set for genes associated with cell types
deseq2 rna-seq gsea gene enrichment analysis written 3 months ago by rebeliscu • 0
2
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2
answers
1.3k
views
2
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GSEA on single-cell cluster data
single-cell R gsea written 8 months ago by roy.granit • 800 • updated 3 months ago by marcovicari3 • 0
1
vote
0
answers
272
views
0
answers
Interpreting GSEA enrichment plots/results
rna-seq gsea written 3 months ago by vinayjrao • 120
6
votes
1
answer
530
views
1
answer
Normal to have high variability in Broad Institute's GSEA Output?
gsea go written 9 months ago by Kristin Muench • 410
1
vote
1
answer
244
views
1
answer
Enrichr : how to provide background as gene symbols or int ?
gene microarray rna-seq gsea written 4 months ago by fr • 100
3
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0
answers
250
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0
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Estimating gene set enrichment using Fishers exact test
fisherstest rna-seq gsea lncrna written 4 months ago by Biologist • 150
1
vote
1
answer
259
views
5 follow
1
answer
How to perform GSEAPreranked analysis in a proper manner?
gsea written 4 months ago by Deepak Tanwar • 3.9k • updated 4 months ago by mikhael.manurung • 0
9
votes
2
answers
437
views
5 follow
2
answers
Pathway analysis and Gene enrichment Analysis Queries
rnaseq enrichment score pathway analysis gsea written 6 months ago by bioinforesearchquestions • 230 • updated 6 months ago by dz2353 • 70
5
votes
1
answer
404
views
1
answer
In GSEA, how can one "correlate" gene expression with categorical phenotype data?
pearson genes correlation gsea expression written 7 months ago by O.rka • 110 • updated 7 months ago by Kevin Blighe ♦ 43k
0
votes
1
answer
417
views
1
answer
Run GSEA with custom gene sets?
gene enrichment differential-abundance custom gsea written 7 months ago by O.rka • 110 • updated 7 months ago by h.mon ♦ 25k
19
votes
2
answers
5.5k
views
10 follow
2
answers
Gene Set Enrichment Analysis after DESeq2
geneontology deseq2 rna-seq gsea written 20 months ago by Sreeraj Thamban • 140 • updated 7 months ago by enxxx23 • 230
6
votes
0
answers
322
views
5 follow
0
answers
Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 7 months ago by tpham2654 • 0 • updated 7 months ago by Michael Dondrup ♦ 46k
2
votes
1
answer
331
views
1
answer
Differentially expressed genes data sets for download
geo dataset differentially expressed genes gsea written 7 months ago by Mk • 10 • updated 7 months ago by Istvan Albert ♦♦ 80k
3
votes
2
answers
1.4k
views
2
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GSEA with variant proportions as input
variant proportions input gsea written 3.9 years ago by manali.rupji • 0 • updated 8 months ago by Biostar ♦♦ 20
4
votes
2
answers
585
views
2
answers
Gene set enrichment analysis with logFC and PValue
R gene expression rna-seq gsea genesetenrichment written 8 months ago by Vasu • 330 • updated 8 months ago by sangram_keshari • 180
1
vote
0
answers
330
views
0
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Why all NES values are >0.5
rna-seq gsea written 8 months ago by gregoire.destreel • 10 • updated 8 months ago by Biostar ♦♦ 20
3
votes
1
answer
568
views
6 follow
1
answer
Gene set enrichment analysis
enrichment gsa gsea R written 8 months ago by Bogdan • 800 • updated 8 months ago by zx8754 ♦ 7.5k
0
votes
1
answer
351
views
1
answer
extract gseaResult in clusterprofiler
clusterprofiler gsea written 8 months ago by sugus • 30 • updated 8 months ago by Guangchuang Yu • 2.2k
7
votes
2
answers
964
views
8 follow
2
answers
Gene set enrichment analysis with edgeR output
R edger genesetenrichment gsea rna-seq written 8 months ago by Biologist • 150 • updated 8 months ago by h.mon ♦ 25k
4
votes
1
answer
1.0k
views
5 follow
1
answer
Performing GSEA using MSigDB gene sets in R
msigdb R gsea written 8 months ago by wilsonav • 10 • updated 8 months ago by igor ♦ 7.7k
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