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9
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2
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238
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5 follow
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Pathway analysis and Gene enrichment Analysis Queries
rnaseq enrichment score pathway analysis gsea written 6 weeks ago by bioinforesearchquestions • 190 • updated 6 weeks ago by dz2353 • 50
4
votes
1
answer
187
views
1
answer
In GSEA, how can one "correlate" gene expression with categorical phenotype data?
pearson genes correlation gsea expression written 9 weeks ago by O.rka • 70 • updated 8 weeks ago by Kevin Blighe ♦ 35k
0
votes
1
answer
135
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1
answer
Run GSEA with custom gene sets?
gene enrichment differential-abundance custom gsea written 9 weeks ago by O.rka • 70 • updated 9 weeks ago by h.mon ♦ 22k
13
votes
3
answers
4.0k
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10 follow
3
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Gene Set Enrichment Analysis after DESeq2
geneontology deseq2 rna-seq gsea written 15 months ago by Sreeraj Thamban • 110 • updated 10 weeks ago by enxxx23 • 200
6
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0
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209
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5 follow
0
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 10 weeks ago by tpham2654 • 0 • updated 10 weeks ago by Michael Dondrup ♦ 45k
2
votes
1
answer
204
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1
answer
Differentially expressed genes data sets for download
geo dataset differentially expressed genes gsea written 12 weeks ago by Mk • 10 • updated 12 weeks ago by Istvan Albert ♦♦ 78k
3
votes
2
answers
1.2k
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2
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GSEA with variant proportions as input
variant proportions input gsea written 3.4 years ago by manali.rupji • 0 • updated 3 months ago by Biostar ♦♦ 20
4
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2
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273
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2
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Gene set enrichment analysis with logFC and PValue
R gene expression rna-seq gsea genesetenrichment written 3 months ago by Bioinfo • 270 • updated 3 months ago by sangram_keshari • 120
1
vote
0
answers
175
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0
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Why all NES values are >0.5
rna-seq gsea written 3 months ago by gregoire.destreel • 10 • updated 3 months ago by Biostar ♦♦ 20
3
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1
answer
305
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6 follow
1
answer
Gene set enrichment analysis
enrichment gsa gsea R written 3 months ago by Bogdan • 690 • updated 3 months ago by zx8754 ♦ 6.2k
2
votes
1
answer
456
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1
answer
GSEA on single-cell cluster data
single-cell R gsea written 3 months ago by roy.granit • 750 • updated 3 months ago by igor ♦ 7.2k
0
votes
1
answer
180
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1
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extract gseaResult in clusterprofiler
clusterprofiler gsea written 3 months ago by sugus • 30 • updated 3 months ago by Guangchuang Yu • 2.0k
7
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2
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394
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8 follow
2
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Gene set enrichment analysis with edgeR output
R edger genesetenrichment gsea rna-seq written 3 months ago by Biologist • 110 • updated 3 months ago by h.mon ♦ 22k
4
votes
1
answer
334
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5 follow
1
answer
Performing GSEA using MSigDB gene sets in R
msigdb R gsea written 3 months ago by wilsonav • 10 • updated 3 months ago by igor ♦ 7.2k
23
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0
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4.4k
views
0
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Tool: Plotting GSEA output in R
javagsea plot tool rna-seq gsea written 2.4 years ago by t.kuilman • 720
1
vote
0
answers
250
views
0
answers
Normal to have high variability in Broad Institute's GSEA Output?
gsea go written 4 months ago by Kristin Muench • 350
1
vote
1
answer
377
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5 follow
1
answer
GSEA results change in clusterProfiler
clusterprofiler gsea written 4 months ago by sugus • 30 • updated 4 months ago by Guangchuang Yu • 2.0k
2
votes
2
answers
383
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5 follow
2
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GSEA, input metrics
gsea rna-seq written 4 months ago by g.e.novakovsky • 20 • updated 4 months ago by shawn.w.foley • 140
0
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0
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259
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0
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How to customized CpGlist or Genelist in chAMP.gsea
gsea champ written 4 months ago by sugus • 30
13
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1
answer
2.8k
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1
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Tool: clusterProfiler: an R package for comparing biological themes among gene clusters
tool kegg clusterprofiler R gsea go written 2.5 years ago by Guangchuang Yu • 2.0k
0
votes
1
answer
393
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1
answer
Gene Set Enrichment between two dataset
r language gsea rna-seq written 5 months ago by gracie • 0 • updated 5 months ago by ewre • 210
5
votes
2
answers
215
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7 follow
2
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GSEA top genes vs all platform
functional analysis rna-seq gsea written 5 months ago by ra2967 • 10 • updated 5 months ago by Charles Warden ♦ 5.9k
2
votes
1
answer
201
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1
answer
Pathway test for reversal of effect (three-condition comparison)
camera differential expression gsea rna-seq written 5 months ago by glocke01 • 160 • updated 5 months ago by assaron • 170
0
votes
0
answers
154
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0
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Why is number of geneset present in MSigDB C2:CP:KEGG geneset different from the original KEGG pathway?
gsea written 6 months ago by mariet1051 • 0
0
votes
2
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286
views
2
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Need help in GSEA analysis and interpretation
barcode plot gsea rna-seq written 6 months ago by vinayjrao • 110
0
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1
answer
242
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1
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GSEA - Calculate the probability of each gene being enriched?
gene module gsea rna-seq statistics written 6 months ago by adnbps • 0 • updated 6 months ago by vj • 380
1
vote
1
answer
354
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1
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GSEA Phenotype Table Input
gsea written 7 months ago by DVA • 480 • updated 7 months ago by c.chakraborty • 110
0
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1
answer
255
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1
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weird problem with desktop GSEA
rna-seq gsea written 7 months ago by anasofiamoreira94 • 30 • updated 7 months ago by yueli7 • 30
6
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3
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2.0k
views
3
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Simplest way to perform GSEA from a weighted list of entrez gene ids
enrichment transcriptomics gsea written 2.5 years ago by rachel.cavill • 30 • updated 8 months ago by pshubhamoy • 20
4
votes
1
answer
1.3k
views
6 follow
1
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Interpreting GSEA results
next-gen rna-seq gsea written 13 months ago by Ron • 840 • updated 8 months ago by pshubhamoy • 20
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