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<prev • 189 results • page 1 of 7 • next >
0
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GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
macs2 chip-seq gsea written 9 days ago by dariasc • 0 • updated 9 days ago by alserg • 390
1
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2
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106
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2
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CPM or TPM in GSEA analysis
rna-seq gsea written 16 days ago by francesca3 • 0 • updated 10 days ago by kristoffer.vittingseerup • 3.0k
7
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2
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173
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7 follow
2
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GSEA PreRanked lists from DESeq2 results table
fgsea deseq2 gsea preranked written 15 days ago by Assa Yeroslaviz • 1.3k • updated 13 days ago by jomo018 • 540
3
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0
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107
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0
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Why do some gene set enrichment services do not ask for a background data set
enrichr panther gsea gorilla written 26 days ago by K.patel5 • 30
2
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2
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176
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2
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RNA Seq data with GSEA
voom vsn rna-seq gsea written 28 days ago by pennakiza • 50 • updated 28 days ago by Gordon Smyth • 1.4k
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110
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how to create -gct and .cls files from RNASeq counts?
.gct deseq2 gsea .cls rna-seq written 4 weeks ago by annamariabugaj • 0
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1.1k
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9 follow
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Tool: MSigDB for Multiple Organisms in a Tidy Data Format
msigdb pathways tool gsea R written 22 months ago by igor ♦ 9.6k
1
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1
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252
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1
answer
Finding All Genes (Differential or Not) in Seurat's FindAllMarkers
seurat gsea written 9 weeks ago by bioinformatics2020 • 60
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2
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201
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5 follow
2
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How to visualize GSEA results in a graph using R
R rna-seq gsea written 9 weeks ago by francesca3 • 0 • updated 9 weeks ago by zhao03 • 30
0
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1
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98
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1
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How to solve: fgsea returns empty dataframe
fgsea R gsea written 9 weeks ago by nattzy94 • 10
2
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1
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154
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1
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Help with converting gene symbols to gene IDs
R gsea written 10 weeks ago by nattzy94 • 10 • updated 10 weeks ago by Ahill • 1.8k
2
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1
answer
127
views
1
answer
Pathway enrichment analysis for a small set of genes
pathway enrichment analysis gsea gene signature written 10 weeks ago by Raheleh • 130 • updated 10 weeks ago by dsull • 900
6
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1
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152
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6 follow
1
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fGSEA result to csv
fgsea rna-seq gsea written 11 weeks ago by mbk0asis • 510 • updated 11 weeks ago by alserg • 390
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1.4k
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0
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Gene Set Enrichment Analysis using Variant Density instead of Expression levels?
R density gsea enrichment written 3.7 years ago by anp375 • 170 • updated 12 weeks ago by Biostar ♦♦ 20
3
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3
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295
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3
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Thousands of significant differentially expressed genes but no significant enriched pathways by GSEA?
statistics rna-seq gsea adjusted p-value written 3 months ago by 88adavis • 0 • updated 12 weeks ago by alserg • 390
0
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0
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163
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0
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GSEA preranked analysis for unsigned/one-sided gene rankings?
fgsea one-sided gsea preranked unsigned written 3 months ago by keith.hughitt • 270 • updated 12 weeks ago by Biostar ♦♦ 20
1
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262
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clusterProfiler GSEA for upregulated and downregulated gene sets: conflicting results
deseq2 clusterprofiler gsea written 3 months ago by hibernicah • 20
1
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1
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175
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1
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Functional annotation of pathways in a genelist
gene annotation pathway analysis gsea enrichment written 3 months ago by tejas_j • 0 • updated 3 months ago by hibernicah • 20
6
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1
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216
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1
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Functional analysis of RNASeq differentially expressed genes
camera rna-seq ipa gsea limma written 3 months ago by Colari19 • 40 • updated 3 months ago by h.mon ♦ 29k
1
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1
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174
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1
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relevance of GSEA on Nanostring ncounter gene expression data ?
nanostring gsea written 3 months ago by guillaume.rbt • 770 • updated 3 months ago by i.sudbery ♦ 7.0k
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103
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java-GSEA rank gene list problem
gsea written 3 months ago by MatthewP • 390
5
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1
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240
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1
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GSEA and normalized reads count
deseq2 rna-seq gsea written 4 months ago by Morris_Chair • 170
4
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1
answer
177
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1
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Gene Set Enrichment Analysis
enrichment analysis modules gsea written 4 months ago by XBria • 60 • updated 4 months ago by Kevin Blighe ♦ 54k
2
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0
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187
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0
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Gene Set Enrichment Analysis
R gsea rna-seq written 4 months ago by ugurcabuk • 20
2
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1
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332
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5 follow
1
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Bonferroni multiple corrections question
scrna-seq rna-seq gsea statistics written 4 months ago by jevanveen • 20 • updated 4 months ago by dsull • 900
0
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366
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Are singscore scores comparable between gene sets?
genesets gsva gsea subtypes singscore written 11 months ago by Pietro • 100 • updated 4 months ago by vikram56j • 0
0
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0
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156
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0
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GSEA preranked heatmap?
gsea heatmap written 4 months ago by ystokar • 0
2
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1
answer
249
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1
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GSEA for paired RNA-Seq data
rna-seq gsea written 4 months ago by bjeremy • 0 • updated 4 months ago by kristoffer.vittingseerup • 3.0k
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1.1k
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1
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gene set enrichment analysis for continuous phenotype
R gene set enrichment analysis tools gsea written 2.4 years ago by email2mrna • 10 • updated 4 months ago by xlhd19980327 • 0
0
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241
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Is there any particular R package for Gene Set Enrichment Analysis (GSEA) of scRNA-seq datasets?
scrna-seq gsea written 5 months ago by Paragon • 0
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