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<prev • 164 results • page 1 of 6 • next >
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Is there any particular R package for Gene Set Enrichment Analysis (GSEA) of scRNA-seq datasets?
scrna-seq gsea written 23 hours ago by Paragon • 0
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77
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*.rnk file preparation for GSEA analysis
R rna-seq webgestalt enrichment analysis gsea written 1 day ago by o.mikh90 • 10
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85
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1
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GSEA: Can a gene set have positive and negative enrichment scores?
gsea written 3 days ago by penny.lane • 0
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130
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6 follow
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Enrichment analysis software examples
pathway fuma gwas enrichment analysis gsea written 21 days ago by s.may-wilson • 20 • updated 20 days ago by Jean-Karim Heriche ♦ 20k
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127
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1
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Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by DESeq2 and edgeR packages
egsea deseq2 rna-seq gsea edger written 4 weeks ago by F. Golestan • 20 • updated 4 weeks ago by h.mon ♦ 27k
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458
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1
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GSEA - Calculate the probability of each gene being enriched?
gene module gsea rna-seq statistics written 15 months ago by adnbps • 10 • updated 5 weeks ago by Biostar ♦♦ 20
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546
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1
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Interpreting GSEA enrichment plots/results
rna-seq gsea written 6 months ago by vinayjrao • 140 • updated 6 weeks ago by restonpiston • 20
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1
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142
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1
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GSEA Tool to use with RNA-seq data
rna-seq gsea written 6 weeks ago by restonpiston • 20 • updated 6 weeks ago by Buffo • 1.7k
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256
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GSEA error - After pruning, none of the gene sets passed size thresholds
gene genome rna-seq gsea written 6 weeks ago by limjustinj • 0 • updated 6 weeks ago by Morris_Chair • 120
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203
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1
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Need help choosing genes and calculating ranks for GSEA rank file
calculating ranks gsea enrichment analysis rna-seq written 9 weeks ago by zlikowski • 20 • updated 9 weeks ago by alserg • 250
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78
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Would anyone have access to ESSNet?
gsea rna-seq written 9 weeks ago by lawrence.hsu • 10
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92
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Testing for enrichment between two weighted ranked lists
R rna-seq microrna enrichment analysis gsea written 11 weeks ago by PeterA • 0
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225
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For Pre-Ranked GSEA on gene and log2FC list: Choose Weighted or Classic Enrichment Statistic?
gsea rna-seq written 12 weeks ago by edward_william • 0
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Max/min value of enrichment score
gsea written 4 months ago by runningonempty • 10 • updated 12 weeks ago by alserg • 250
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GSEA- can't create a gene set GRP file
geneset grp gsea written 12 weeks ago by kdc15 • 30
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1
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164
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1
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Preranked GSEA statistics
gsea written 3 months ago by elb • 160 • updated 3 months ago by alserg • 250
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1
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399
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1
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View gene list in GAGE enriched terms
gene ontology gsea gage written 16 months ago by mbk0asis • 460 • updated 3 months ago by giderk • 0
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How to get wikipathways without disease and cancer ontologies?
wikipathways gene ontology rna-seq gsea written 4 months ago by Gabriel • 50
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180
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Gene Set Enrichment Analysis
gsea written 5 months ago by sana777munquad • 0
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599
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1
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What is the best way to rank genes for GSEA?
gene ranking gsea go rna-seq written 5 months ago by Gabriel • 50 • updated 5 months ago by Pietro • 90
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229
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module membership (kME) versus NES (normalized enrichment score) from GSEA
gsea written 5 months ago by anamaria • 60
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503
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GSEA using clusterProfiler
software error clusterprofiler gsea written 5 months ago by dxc008263 • 0
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278
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Clusterprofiler with a set of GO Terms
go term visualization clusterprofiler gsea written 5 months ago by babji2318 • 0
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197
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Are singscore scores comparable between gene sets?
genesets gsva gsea subtypes singscore written 6 months ago by Pietro • 90
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207
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"Manual" enrichment analysis of gene set for genes associated with cell types
deseq2 rna-seq gsea gene enrichment analysis written 6 months ago by rebeliscu • 0
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GSEA on single-cell cluster data
single-cell R gsea written 11 months ago by roy.granit • 800 • updated 6 months ago by marcovicari3 • 0
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645
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6 follow
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Normal to have high variability in Broad Institute's GSEA Output?
gsea go written 12 months ago by Kristin Muench • 450
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381
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1
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Enrichr : how to provide background as gene symbols or int ?
gene microarray rna-seq gsea written 7 months ago by fr • 100
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319
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Estimating gene set enrichment using Fishers exact test
fisherstest rna-seq gsea lncrna written 7 months ago by Biologist • 150
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397
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5 follow
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How to perform GSEAPreranked analysis in a proper manner?
gsea written 7 months ago by Deepak Tanwar • 4.0k • updated 7 months ago by mikhael.manurung • 0
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