Showing: gseareset
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KEGG pathways and modules
annotation kegg gsea kegg modules written 9 days ago by amborella0 • updated 8 days ago by EagleEye4.8k
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Linking patient survival to gene-set analysis
tcga gsea survival rna-seq written 17 days ago by mattkarikomi0 • updated 16 days ago by Kevin Blighe9.0k
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How do you compare GSEA results between treatments?
microarray gsea written 21 days ago by shawn.w.foley10 • updated 16 days ago by Kevin Blighe9.0k
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Cut-off for genesets in GSEA
gsea written 27 days ago by Shamim Sarhadi180 • updated 26 days ago by assaron100
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GSEA Preranking algorithms
preranking gsea rna-seq written 4 weeks ago by Doom10
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Doing GSEA analysis on a set of genes
enrichment rna-seq gsea written 6 weeks ago by chahatupretiiitk40 • updated 6 weeks ago by EagleEye4.8k
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Gene Set Enrichment Analysis after DESeq2
geneontology deseq2 rna-seq gsea written 7 weeks ago by Sreeraj Thamban80 • updated 7 weeks ago by prakash100
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GSVA enrichment score and heatmap
ssgsea R gsva gsea written 8 weeks ago by steve.booth10 • updated 8 weeks ago by Kevin Blighe9.0k
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Gene sets associated with neurological functioning?
msigdb gene sets psychiatric genetics gsea written 10 weeks ago by Ellen O0 • updated 10 weeks ago by Alex Reynolds21k
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How can we calculate expression value from raw data
sequence rna-seq gsea written 11 weeks ago by lmanohara9920 • updated 11 weeks ago by Michael Dondrup43k
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GSEA related to other functional analyses
rna-seq gsea goterm written 4 months ago by sup23020 • updated 11 weeks ago by Biostar ♦♦ 20
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Tool: Plotting GSEA output in R
javagsea plot tool rna-seq gsea written 16 months ago by t.kuilman360
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GSEA following DESeq2
R deseq2 rna-seq gsea written 4 months ago by sup23020 • updated 4 months ago by geek_y8.1k
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multi-omics data gene set enrichment analysis
R gene set enrichment analysis gsea omics written 4 months ago by email2mrna0 • updated 4 months ago by EagleEye4.8k
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Scoring scheme in GSEA
gsea written 4 months ago by vivien.wee160 • updated 4 months ago by Santosh Anand3.0k
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General questions about running GSEAPreranked
gseapreranked gsea written 5 months ago by mmccarthy78110 • updated 5 months ago by Samuel Brady230
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p-values in GSEA
gsea written 5 months ago by vivien.wee160 • updated 5 months ago by Giovanni M Dall'Olio25k
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How to rank genes prepared for GSEA analysis with TopGO
topgo gsea rna-seq written 5 months ago by wangdp12360 • updated 5 months ago by kennethcondon2007970
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Input all the ranked genes into pre-ranked GSEA?
ranked gsea written 5 months ago by blairzxy20 • updated 5 months ago by assaron100
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GSEA produces too few enriched sets
kallisto gsea transcriptome written 5 months ago by crimsontabaq40 • updated 5 months ago by kristoffer.vittingseerup350
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How to perform GSEA analysis with survival phenotype?
gsea survival written 6 months ago by blairzxy20 • updated 6 months ago by Sean Davis24k
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