Showing: gtfreset
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1
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110
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Add double qoutes around transcript_id in gtf file
gtf stringtie rna-seq awk written 20 days ago by BioBaby0 • updated 20 days ago by finswimmer8.8k
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0
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106
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0
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4
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0
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231
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0
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what is the easiest/fastest way to convert from BAM to GTF
gtf bam written 3 months ago by Sam80 • updated 6 weeks ago by Biostar ♦♦ 20
26
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3
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3.4k
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12 follow
3
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Transform a GTF file into a data frame in R
gtf data frame annotation file rna-seq annotation written 16 months ago by cristian180 • updated 8 weeks ago by Biostar ♦♦ 20
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1
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200
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1
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hisat2 and RSEM pipeline
software error gtf rna-seq rsem hisat2 written 10 weeks ago by Shahzad10 • updated 10 weeks ago by EagleEye6.1k
3
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2
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180
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2
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no gene_id for tRNA in GFF3
gff3 annotation gtf written 12 weeks ago by prasundutta87290
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1
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150
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1
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Where to find a valid GTF file for stringtie asssembly?
gtf stringtie transcriptome written 12 weeks ago by Vijay Lakhujani3.5k • updated 12 weeks ago by Damian Kao15k
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1
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1.2k
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1
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How to rename chromosome names in GTF file?
gtf fasta annotation genome written 16 months ago by cristian180 • updated 3 months ago by Biostar ♦♦ 20
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1
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3.4k
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1
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GFF3 to GTF
gtf gff written 2.9 years ago by silas00870 • updated 4 months ago by RamRS20k
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2
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345
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2
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0
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1
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342
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1
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Converting fasta to gtf using reference genome
fasta gtf conversion written 4 months ago by KI0 • updated 4 months ago by h.mon22k
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1
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331
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1
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2
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2
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991
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2
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problem with using gtf file in cufflinks in Galaxy
gtf fpkm cufflinks rna-seq written 2.7 years ago by nazaninhoseinkhan360 • updated 4 months ago by Biostar ♦♦ 20
9
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8
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8.6k
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8
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extract only geneID and gene symbol from GTF file
genome gtf python written 3.7 years ago by catherine12243100 • updated 4 months ago by Minstein60
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0
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501
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0
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1
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1
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259
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1
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Create a GTF file from mapped reads
genome gtf saf written 4 months ago by JulianC10 • updated 4 months ago by grant.hovhannisyan1.4k
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1
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289
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1
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the track part of UCSC table browser
table browser gtf rna-seq ucsc written 7 months ago by mikysyc201630 • updated 5 months ago by Denise - Open Targets4.7k
3
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1
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496
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1
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Convert gff3 to gtf with R or shell
gff3 R ngs shell gtf written 5 months ago by bioinfo8100
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1
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249
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1
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1
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1
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221
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1
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some questions on GFF3
gtf annotation gff written 5 months ago by prasundutta87290
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1
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331
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1
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0
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1
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261
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1
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gffread error when converting gff to gtf
gtf software error gff gffread written 5 months ago by LucasK0 • updated 5 months ago by Jeffin Rockey1000
3
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1
answer
419
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1
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How to represent trans-spliced genes in GTF?
gtf file-format trans-splicing written 19 months ago by Dan500 • updated 5 months ago by Biostar ♦♦ 20
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2
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4.9k
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2
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STAR genome index with and/or with out *.gtf annotation
gtf alignment star rna-seq bowtie written 2.7 years ago by kirannbishwa01900 • updated 5 months ago by drskm70
4
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1
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246
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1
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Why a gene name have more than one ensembl ID in gtf?
gtf ensembl written 6 months ago by walker10 • updated 6 months ago by Emily_Ensembl16k
6
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1
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355
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5 follow
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TopHat v2.1.1- Warning: TopHat did not find any junctions in GTF file
gtf tool rna-seq written 6 months ago by Munmun0 • updated 6 months ago by genomax60k
1
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0
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266
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0
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Combining two databases in gtf file, bedtools gives wierd result
bedtools gtf noncode written 6 months ago by marina.v.yurieva470 • updated 6 months ago by Biostar ♦♦ 20
0
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1
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322
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1
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0
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0
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275
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0
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Unknown Stringtie IDs produced when using Ensembl GTF
gtf ensembl stringtie rna-seq written 7 months ago by freuv20 • updated 6 months ago by Emily_Ensembl16k
1
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1
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822
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1
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Stringtie output files
gtf stringtie rna-seq written 7 months ago by g.e.novakovsky20 • updated 7 months ago by Kevin Blighe35k
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