Showing: gtfreset
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hisat2 and RSEM pipeline
software error gtf rna-seq rsem hisat2 written 7 days ago by Shahzad10 • updated 7 days ago by EagleEye5.9k
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2
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109
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2
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95
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Where to find a valid GTF file for stringtie asssembly?
gtf stringtie transcriptome written 25 days ago by Vijay Lakhujani3.1k • updated 25 days ago by Damian Kao15k
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125
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5
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How to rename chromosome names in GTF file?
gtf fasta annotation genome written 13 months ago by cristian170 • updated 7 weeks ago by Biostar ♦♦ 20
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GFF3 to GTF
gtf gff written 2.7 years ago by silas00870 • updated 8 weeks ago by RamRS19k
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2
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285
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2
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0
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216
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Converting fasta to gtf using reference genome
fasta gtf conversion written 11 weeks ago by KI0 • updated 11 weeks ago by h.mon21k
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242
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2
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problem with using gtf file in cufflinks in Galaxy
gtf fpkm cufflinks rna-seq written 2.5 years ago by nazaninhoseinkhan340 • updated 11 weeks ago by Biostar ♦♦ 20
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extract only geneID and gene symbol from GTF file
genome gtf python written 3.5 years ago by catherine12243100 • updated 11 weeks ago by Minstein0
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463
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0
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1
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209
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Create a GTF file from mapped reads
genome gtf saf written 11 weeks ago by JulianC10 • updated 11 weeks ago by grant.hovhannisyan1.2k
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241
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the track part of UCSC table browser
table browser gtf rna-seq ucsc written 4 months ago by mikysyc201620 • updated 3 months ago by Denise - Open Targets4.7k
3
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299
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1
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Convert gff3 to gtf with R or shell
gff3 R ngs shell gtf written 3 months ago by bioinfo8100
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170
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1
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1
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1
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167
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1
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some questions on GFF3
gtf annotation gff written 3 months ago by prasundutta87260
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224
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0
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1
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189
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gffread error when converting gff to gtf
gtf software error gff gffread written 3 months ago by LucasK0 • updated 3 months ago by Jeffin Rockey760
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How to represent trans-spliced genes in GTF?
gtf file-format trans-splicing written 17 months ago by Dan500 • updated 3 months ago by Biostar ♦♦ 20
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STAR genome index with and/or with out *.gtf annotation
gtf alignment star rna-seq bowtie written 2.5 years ago by kirannbishwa01870 • updated 3 months ago by drskm70
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193
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Why a gene name have more than one ensembl ID in gtf?
gtf ensembl written 3 months ago by walker10 • updated 3 months ago by Emily_Ensembl16k
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5 follow
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TopHat v2.1.1- Warning: TopHat did not find any junctions in GTF file
gtf tool rna-seq written 3 months ago by Munmun0 • updated 3 months ago by genomax58k
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Combining two databases in gtf file, bedtools gives wierd result
bedtools gtf noncode written 4 months ago by marina.v.yurieva470 • updated 4 months ago by Biostar ♦♦ 20
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251
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212
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Unknown Stringtie IDs produced when using Ensembl GTF
gtf ensembl stringtie rna-seq written 4 months ago by freuv20 • updated 4 months ago by Emily_Ensembl16k
1
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628
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1
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Stringtie output files
gtf stringtie rna-seq written 4 months ago by g.e.novakovsky20 • updated 4 months ago by Kevin Blighe31k
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450
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7 follow
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Genomic statistics from gtf
gene gtf written 5 months ago by plebaninora0
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3
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337
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3
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2
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409
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Error for reading .gtf file in R
gtf gene transform format refgenome rna-seq written 5 months ago by modarzi50 • updated 5 months ago by kristoffer.vittingseerup700
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