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40
votes
4
answers
7.1k
views
9 follow
4
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How To Get Gene Regions +3Kb Upstream
gtf ucsc written 8.1 years ago by Stephen2.7k • updated 13 hours ago by Biostar ♦♦ 20
1
vote
1
answer
53
views
1
answer
htseq-count without GTF?
htseq count fpkm htseq-count gtf written 6 days ago by blur140 • updated 6 days ago by ATpoint40k
36
votes
4
answers
11k
views
17 follow
4
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Transform a GTF file into a data frame in R
gtf data frame annotation file rna-seq annotation written 3.1 years ago by cristian250 • updated 19 days ago by D. Puthier330
2
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0
answers
159
views
0
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Tool: Extend 3' UTR of a GTF file
gtf annotation tool rna-seq python written 4 weeks ago by Shred230
7
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3
answers
294
views
6 follow
3
answers
Please help : How to deal with 'Missing gene_name' of GTF file?
gtf drop-seq rna-seq written 9 weeks ago by tofukaj10 • updated 4 weeks ago by Juke344.8k
0
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0
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117
views
0
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3
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1
answer
235
views
1
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Convert .gbff (gene bank flat format) to gff3, gtf
genome gtf gff genebank gbff written 8 weeks ago by alex0 • updated 8 weeks ago by Juke344.8k
5
votes
2
answers
280
views
5 follow
2
answers
TSS metaprofile using Deeptools
gtf deeptools computematrix metaprofile written 3 months ago by mickey_9510 • updated 12 weeks ago by zhuobaowen10
0
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1
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1.9k
views
1
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2
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0
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229
views
0
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0
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0
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146
views
0
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2
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0
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232
views
0
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Tutorial: Sorting GFF/GTF files
gtf gff sort annotation forum tutorial written 3 months ago by Juke344.8k
0
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0
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109
views
0
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Tool to merge two GTFs
gtf R written 3 months ago by manninm0
0
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0
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132
views
0
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1
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2
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2.3k
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2
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2
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0
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3.1k
views
0
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Calculating Fpkm/Rpkm For Each Read Group Given A Gtf File
gtf rpkm fpkm rna-seq written 6.6 years ago by Nathan S. Watson-Haigh200 • updated 3 months ago by Biostar ♦♦ 20
1
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1
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4.9k
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1
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How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 3.9 years ago by al-ash140 • updated 4 months ago by Biostar ♦♦ 20
0
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0
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91
views
0
answers
1
vote
1
answer
124
views
1
answer
Genome vs. Transcriptome Annotation
gtf annotation rna-seq written 4 months ago by arussell348320 • updated 4 months ago by RamRS30k
5
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1
answer
195
views
1
answer
2
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0
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239
views
0
answers
2
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0
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161
views
0
answers
0
votes
1
answer
187
views
1
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Correct gtf file format (AGAT toolkit)
gtf gff3 gff agat rna-seq written 4 months ago by tianshenbio50 • updated 4 months ago by Juke344.8k
2
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1
answer
228
views
1
answer
1
vote
1
answer
350
views
1
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pre-mRNA GTF reference for 10x
gtf singlecellrnaseq rna singlecell velocity written 5 months ago by V230 • updated 5 months ago by piyushjo550
1
vote
1
answer
469
views
1
answer
GTF file in Ensembl database for RNA-Seq analysis
gtf rna-seq written 18 months ago by wangdp123250 • updated 6 months ago by Biostar ♦♦ 20
0
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0
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186
views
0
answers
0
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1
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1.7k
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1
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Collecting 3' UTR and neighboring exonic sequence from GENCODE GTF files
gtf utr gencode written 4.5 years ago by mdwain.uw0 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
189
views
0
answers
How do I add new columns to my dictionary
gtf parse ggf written 7 months ago by rcnml160 • updated 7 months ago by RamRS30k
0
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2
answers
432
views
2
answers
Counting how many transcripts per gene in gtf file
gene python rna-seq gtf written 7 months ago by sallyey20 • updated 7 months ago by wm490
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