Showing: gtfreset
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5
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What is wrong with my custom GTF ??
rnaseq custom gtf gtf written 4.4 years ago by Joel TM50 • updated 36 minutes ago by Biostar ♦♦ 20
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39
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2
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1
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1.0k
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1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 2.4 years ago by Marvin150 • updated 7 days ago by Biostar ♦♦ 20
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0
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137
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0
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7
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2
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234
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5 follow
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How do I download mm10 major release genomic fasta and gtf file?
gtf assembly genomic fasta ftp written 6 weeks ago by sg19710 • updated 6 weeks ago by 27atcggcta27150
1
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1
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250
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5 follow
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1
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644
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1
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0
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142
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1
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228
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1
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Gene feature information missing in Stringtie merged assembly
gtf assembly rna-seq written 4 months ago by waqaskhokhar99980 • updated 4 months ago by Juke-342.9k
2
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1
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253
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1
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bedtools slop set start to -1
gtf bed slop bedtools written 4 months ago by Medhat8.5k • updated 4 months ago by Alex Reynolds29k
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1
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2.0k
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1
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1
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317
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1
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304
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1
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219
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1
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GTF file in Ensembl database for RNA-Seq analysis
gtf rna-seq written 6 months ago by wangdp123190 • updated 6 months ago by Benn7.9k
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1
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414
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1
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2
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1
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231
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1
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1
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1
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274
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1
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Extracting sequence and annotation of a particular gene
gtf annotation written 7 months ago by Adrian Pelin2.3k • updated 7 months ago by ATpoint26k
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2
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5 follow
2
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How to subset a bed or gtf file to some genes of interest?
gtf bed gene genome written 4.6 years ago by cyril-cros890 • updated 8 months ago by dimitrischat90
1
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0
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313
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0
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GTF from consensus sequence
gtf fasta gff written 8 months ago by lfiedlerc10
0
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1
answer
919
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1
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same transcript id with STAR quant mode
gtf star rna-seq written 24 months ago by grant.hovhannisyan1.8k • updated 9 months ago by manuel.belmadani1.1k
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737
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2
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0
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534
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Homer annotatePeaks.pl custom GTF
gtf homer atac-seq written 9 months ago by Lucy40
1
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1
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354
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1
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Add double qoutes around transcript_id in gtf file
gtf stringtie rna-seq awk written 10 months ago by BioBaby10 • updated 10 months ago by finswimmer12k
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359
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4
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667
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what is the easiest/fastest way to convert from BAM to GTF
gtf bam written 13 months ago by Sam130 • updated 11 months ago by Biostar ♦♦ 20
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3
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12 follow
3
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Transform a GTF file into a data frame in R
gtf data frame annotation file rna-seq annotation written 2.2 years ago by cristian240 • updated 12 months ago by Biostar ♦♦ 20
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1
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1.2k
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1
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hisat2 and RSEM pipeline
software error gtf rna-seq rsem hisat2 written 12 months ago by Shahzad10 • updated 12 months ago by EagleEye6.5k
3
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2
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487
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2
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no gene_id for tRNA in GFF3
gff3 annotation gtf written 13 months ago by prasundutta87360
2
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1
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663
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1
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Where to find a valid GTF file for stringtie asssembly?
gtf stringtie transcriptome written 13 months ago by lakhujanivijay4.5k • updated 13 months ago by Damian Kao15k
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1
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2.0k
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1
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How to rename chromosome names in GTF file?
gtf fasta annotation genome written 2.2 years ago by cristian240 • updated 14 months ago by Biostar ♦♦ 20
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