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GWAS Retrieve Target Sample from a whole set of samples and PRS in PRSice tool
gwas plink written 42 minutes ago by landscape95 • 150
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GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
gwas plink written 20 hours ago by landscape95 • 150 • updated 19 hours ago by zx8754 ♦ 6.2k
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Colour doesn't change in Manhanttan plot.
R qqman manhattanplot gwas written 5 days ago by greyman • 80 • updated 4 days ago by zx8754 ♦ 6.2k
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iadmix - population stratification for Genotype data
gwas population stratification iadmix written 5 days ago by samreen.jasvi • 0
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"Core Dumped" when using GEMMA for GWAS
gemma bugwas gwas written 20 months ago by amandinette • 20 • updated 22 days ago by morteza.mahmoudisaber • 70
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How to choose best PCA for reducing genomic inflation
gwas associtaion study genomic inflation plink pca written 25 days ago by BioRyder • 160 • updated 25 days ago by Kevin Blighe ♦ 35k
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Converting Affymtrix SNP data to plink and VCF formats
vcf gwas snp plink affymetrix written 9 months ago by robjohn70000 • 120 • updated 29 days ago by Biostar ♦♦ 20
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Allele frequencies not matching with reference panel (HRC)
maf gwas written 4 weeks ago by ZB • 0 • updated 4 weeks ago by RamRS ♦ 20k
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Illumina final report file to PLINK
illumina sequencing plink gwas written 5 weeks ago by f.abbondanza94 • 0 • updated 5 weeks ago by zx8754 ♦ 6.2k
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What's the difference between GWAS Catalog and COSMIC database ?
gwas snp written 6 weeks ago by hsiaoyi0504 • 40 • updated 6 weeks ago by Kevin Blighe ♦ 35k
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Understanding LD with tassel results
gwas linkage disequilibrium tassel ld gbs written 6 weeks ago by alesierra28 • 0 • updated 6 weeks ago by Biostar ♦♦ 20
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Tool: Open Targets Genetics: variant-centric resource for drug target identification and prioritisation
gwas tool snp phenotype gene drug written 7 weeks ago by Denise - Open Targets • 4.7k
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--covar Plink Genome wide association
covar gwas covariance plink snp written 6 weeks ago by uskhan.khan5 • 0 • updated 6 weeks ago by finswimmer ♦ 8.8k
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Whether to include reference genome in PCA for association analysis?
gwas pca written 7 weeks ago by Phoenix Mu • 0 • updated 7 weeks ago by zx8754 ♦ 6.2k
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from GWAS to variants
gwas snp written 7 weeks ago by ste.lu • 40
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Log-tranformation and GWAS
gwas transformation genotype logarithm statistics written 8 months ago by rednalf • 20 • updated 7 weeks ago by Biostar ♦♦ 20
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genomic inflation factor and how to use it to estimate adjusted P-values in GWAS?
lambda gwas written 8 weeks ago by Ana • 130 • updated 8 weeks ago by Fabio Marroni • 2.0k
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Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the data externally using SHAPEIT software with family information
genome gwas shapeit phasing hrc written 8 weeks ago by moldach • 110
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Minor allele frequency
alleles gwas snps written 2.1 years ago by alessandrotestori7 • 330 • updated 8 weeks ago by Biostar ♦♦ 20
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6 follow
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GWAS data analysis strategy or pipeline
exom-array gwas snp-array written 9 weeks ago by Shicheng Guo • 7.3k
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Interpretation of Tassel MLM output
genome gwas snp written 9 weeks ago by Denis • 30
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Convert association data from gwas catalog to vcf format
vcf gwas gwas-catalog snp written 9 weeks ago by hsiaoyi0504 • 40 • updated 9 weeks ago by Pierre Lindenbaum ♦ 116k
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What is the best and latest package/software for post-processing of Hi-C (Chromosome Conformation Capture)?
gene R next-gen hic gwas written 8 months ago by jamespower • 30 • updated 10 weeks ago by afli • 150
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SNP coordinates for all genome builds
gwas snp written 11 weeks ago by muraved • 10 • updated 11 weeks ago by Brice Sarver • 2.5k
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How to map GWAS-Catalog traits to Human tissue origins
gwas tissue human written 11 weeks ago by Shicheng Guo • 7.3k
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FarmCPU - how to explain the reported 'effect'?
gwas written 11 weeks ago by Philipp Bayer ♦ 5.9k
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NCBI Remap Issue
genome gwas remapping vcftools snp written 11 weeks ago by f.abbondanza94 • 0
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5 follow
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Why main diagonal of gemma relatedness matrix is not equal to 1
gwas relatedness matrix kinship matrix gemma written 4 months ago by Johan Zicola • 30 • updated 11 weeks ago by sgalla32 • 30
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GWAS or QTL mapping for arabidopsis quantitative traits?
qtl gwas arabidopsis written 11 weeks ago by joshsteiner5 • 0
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GWAS in Plink - phenotype file format
gwas snps plink phenotype written 12 weeks ago by SGMS • 50 • updated 12 weeks ago by zx8754 ♦ 6.2k
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