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2
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40
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1
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How is imputation r2 calculated in minimac3?
imputation minimac3 gwas written 17 hours ago by cityofwisdom • 10 • updated 48 minutes ago by zx8754 ♦ 4.9k
20
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3
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1.4k
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3
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Gwas Peak In Only One Population, Why?
gwas population association written 7.3 years ago by Sally • 30 • updated 2 days ago by Biostar ♦♦ 20
0
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0
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60
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0
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Why quantitative design are preferred GWAS approach
qtl gwas statistical analysis written 3 days ago by ste.lu • 0
1
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1
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2.6k
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1
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Q-Q plots with GWAS p-values using R (needs confidence band)
q-q plots R gwas written 2.6 years ago by joshf • 20 • updated 3 days ago by Kevin Blighe ♦ 28k
2
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2
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2.8k
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2
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Generating .ped and .map files from .dose.vcf.gz files
gwas open imputation written 2.6 years ago by Diego.Morales • 10 • updated 4 days ago by Ram ♦ 17k
2
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1
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828
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1
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Paper for Plink LD clumping 'greedy algorithm'
gwas greedy plink ld clumping written 20 months ago by Lou • 10 • updated 8 days ago by Biostar ♦♦ 20
0
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0
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62
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0
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GWAS for ordinal data? Quantitative trait with lots of "zero" values....
gwas quantitative trait ordinal bimodal regression written 12 days ago by fletchkatie • 0
1
vote
1
answer
152
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1
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PRSice: Imputation and clumping
prsice gwas polygenic risk score snp written 5 weeks ago by muraved • 0 • updated 14 days ago by Sam • 2.1k
35
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10
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20k
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18 follow
10
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Get All The Genes In A Pathway (E.G. Kegg)
pathway gwas kegg gene written 7.2 years ago by Stephen ♦ 2.6k • updated 14 days ago by Ram ♦ 17k
1
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0
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94
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0
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Why main diagonal of gemma relatedness matrix is not equal to 1
gwas relatedness matrix kinship matrix gemma written 20 days ago by Johan Zicola • 20
0
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1
answer
117
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1
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Merging variant replicates rather than filtering
gwas plink vcftools written 21 days ago by dylkot • 0 • updated 21 days ago by chrchang523 ♦ 3.9k
0
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0
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84
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0
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Is it possible to combine binary, continuous and ordinal (categorical) data?
R snp gwas written 21 days ago by kakukeshi • 50
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0
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247
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Job: Biostatistician I, Department of Neurosciences, Icahn School of Medicine at Mount Sinai, NYC, NY
gwas next-gen job snp R rna-seq written 23 days ago by kapoor.manav • 40
0
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0
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156
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0
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Low SNP imputation concordance - except chromosome 1
impute2 imputation plink snp gwas written 26 days ago by muraved • 0
0
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1
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167
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1
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Insignificant QQ plot in GWAS
gwas snp written 26 days ago by Phoenix Mu • 0 • updated 26 days ago by dariober ♦ 9.4k
4
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1
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109
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1
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SNP coordinates and 1KG
gwas snp written 27 days ago by muraved • 0 • updated 27 days ago by finswimmer ♦ 5.3k
1
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1
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134
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1
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GWAS: how do we know we have the most appropriate model?
gwas genomic control inflation gc statistics written 29 days ago by Nick • 40 • updated 29 days ago by Kevin Blighe ♦ 28k
6
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1
answer
134
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1
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Aligning Contigs of various Mtb strains to a reference genome and get the variants
assembly variants mapping gwas written 4 weeks ago by Paul • 60 • updated 4 weeks ago by k.kathirvel93 • 100
0
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1
answer
157
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1
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autosomal ancestry inference
gwas ancestry written 4 weeks ago by J.F.Jiang • 710 • updated 4 weeks ago by Kevin Blighe ♦ 28k
3
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1
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497
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1
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PLINK heterozygosity - Negative F statistic?
gwas plink heterozygosity written 5 months ago by Caragh • 40 • updated 4 weeks ago by moldach • 70
0
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2
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129
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2
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Keeping both A1/A2 in PLINK for assoc/logistic output
gwas plink written 5 weeks ago by gradstudentNew • 10 • updated 5 weeks ago by chrchang523 ♦ 3.9k
0
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0
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105
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0
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Eagle error: Haploid genotype found
gwas next-gen imputation snp written 5 weeks ago by myses030566 • 0
3
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1
answer
299
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1
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GWAS summary file including risk allele, protective allele and disease
protective gwas allele disease risk written 5 months ago by Shicheng Guo • 6.5k • updated 5 weeks ago by btsui • 260
0
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0
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102
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News: GENOME-WIDE SIGNATURES OF SELECTION AND ASSOCIATION STUDIES
gwas news next-gen selection written 5 weeks ago by carlopecoraro2 • 760
3
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1
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157
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1
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What can be considered as novelty in GWAS?
gwas snp array snp cardiovascular written 5 weeks ago by statfa • 330 • updated 5 weeks ago by i.sudbery • 2.5k
0
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0
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125
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0
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How to use the imputed Genotype data text file for a gwas study
gwas imputed genotype txt written 6 weeks ago by asenathi • 0
0
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0
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123
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0
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GWAS imputation and quality control
gwas snp array qc snp imputation written 6 weeks ago by a95087a8d7 • 0
2
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1
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162
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5 follow
1
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Multiple testing correction in linear mixed models (MLM) for GWAS
gwas written 6 weeks ago by Denis • 30 • updated 6 weeks ago by pfs • 250
1
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1
answer
102
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1
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Suspending PLINK epistasis analysis
gwas plink epistasis written 6 weeks ago by milton.andy • 10
1
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1
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135
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1
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Info Score > 1 Plink?
gwas plink score written 6 weeks ago by bg1116 • 0 • updated 6 weeks ago by chrchang523 ♦ 3.9k
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