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GWAS result display
gwas plot written 3 hours ago by yehchan57 • 10
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GWAS - QC & Tutorials.
gwas plots python written 13 days ago by flight505 • 40 • updated 4 hours ago by Kevin Blighe ♦ 51k
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Error codes in LDassoc
software error gwas ldlink ldassoc written 1 day ago by petebrotherwood • 10 • updated 1 day ago by zx8754 ♦ 8.4k
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Graphic outputs using GAPIT
R gapit gwas written 9 weeks ago by baaliou52 • 0 • updated 1 day ago by Biostar ♦♦ 20
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Post GWAS Interpretation - What Next?
gwas haplotype ld written 3 days ago by petebrotherwood • 10
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Problems understanding .cov files in Plink
gwas plink linux written 5 days ago by petebrotherwood • 10
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GWAS in mixed populations
allelic frequencies gwas mixed population written 6 days ago by USA_225478 • 0 • updated 5 days ago by Lemire • 410
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What suggestive line at manhattan plot usually stands for?
gwas multiple testing correction manhattan plot written 6 days ago by rimgubaev • 140
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PLINK file format case control status
gwas plink written 6 days ago by yehchan57 • 10 • updated 6 days ago by zx8754 ♦ 8.4k
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Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inflation factor for covariate 'COVAR1' is too high.
gwas plink written 10 months ago by landscape95 • 160 • updated 8 days ago by FractalDumpster • 0
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simGWAS for GWAS summary statistics
R gwas written 20 days ago by printingdots • 0
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SNPs associated to a disease in the African population
gwas snp detection snp written 10 weeks ago by parisa.ghvm • 0 • updated 21 days ago by Biostar ♦♦ 20
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News: Course: Introduction to GWAS (BERLIN)
gwas news snakemake R python written 23 days ago by carlopecoraro2 • 1.2k
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Strand Alignment in ShapeIt -- "Reference and Main panels are not well aligned"
shapeit gwas alignment written 22 months ago by whit18 • 20 • updated 24 days ago by Kevin Blighe ♦ 51k
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Polygenic Risk Score analysis
gwas prs bioinformatics written 4 weeks ago by pedro.raposo3 • 10 • updated 4 weeks ago by Kevin Blighe ♦ 51k
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Could someone recommend courses/workshops on plant quantitative genetics?
workshops gwas qtl mapping courses plant genomics written 5 weeks ago by rimgubaev • 140
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Phased genotype hapmap3 data encoded as 0 1.
gwas snp hapmap3 written 5 weeks ago by nastasia • 0
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How to intersect GWAS data with GTF or any other genomics annotation file?
genome gwas genetics snp written 6 weeks ago by jack • 790 • updated 5 weeks ago by Biostar ♦♦ 20
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Question about why Illumina HumanExome SNP arrays appear to detect [A/T] and [C/G] SNPs by using two different probes.
array gwas snp illumina written 6 weeks ago by curious • 140 • updated 6 weeks ago by Kevin Blighe ♦ 51k
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Plink MDS plot based on IBS to exclude samples
gwas qc plink ibs mds written 3.4 years ago by Jimbo • 120 • updated 6 weeks ago by Biostar ♦♦ 20
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Mirror Manhattan Plot
plot gwas manhattan qqman R written 2.8 years ago by jennysjaarda • 10 • updated 6 weeks ago by bernatgel • 2.2k
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MLM in GCTA for binomial (0,1) traits in GWAS
gwas lmm gcta written 6 weeks ago by alioniya • 0
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Common variants discovery
gwas wes snp written 7 weeks ago by yehchan57 • 10
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How does genenomestudio's genotyping module calculate minor allele frequency (Minor Freq)?
maf gwas snp genomestudio written 9 weeks ago by curious • 140 • updated 7 weeks ago by Biostar ♦♦ 20
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Are values from the within-family id column of a plink .fam file supposed to unique within just the family or within the whole dataset?
gwas plink written 8 weeks ago by curious • 140
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Plotting file eigenvec
gwas pca plink written 5.5 years ago by danielestrife • 70 • updated 8 weeks ago by zx8754 ♦ 8.4k
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Why kinship is a random effect while population structure is a fixed effect in GWAS studies?
principle components gwas kinship matrix mlm written 9 weeks ago by rimgubaev • 140
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Association test in Plink
gwas association plink written 11 weeks ago by biogirl • 180 • updated 11 weeks ago by zx8754 ♦ 8.4k
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merging GWAS data sets in Plink, error message: merge-equal-pos failure. Variants 'rs___a' and 'rs__b' have the same position, but do not share the same alleles
gwas merge plink error written 3.9 years ago by laurenleesc • 0 • updated 11 weeks ago by h.d.green • 0
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Confused with heritability, liability and familial risk in GWAS studies
gwas familial risk heritability written 11 weeks ago by zxc307 • 0
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