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Recent Replies
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C: Error while using ComplexHeatmap by
mohammedtoufiq91 • 110
@Kevin Blighe , thank you so much. The issue has been resolved after upgrading both R and Complex...
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A: How to use output of PANTHER Enrichment Test as input to cytoscape by
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I tried http://www.pantherdb.org/ --> Statistical enrichment test. Export options for result...
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C: no alignment from plasma derived small RNA by
memento1984_1 • 0
yes, I checked the distribution of the fragments and it is what would be normally expected. I tri...
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C: Get nonoverlapping regions of two bed files by
vctrm67 • 10
Wouldn't this give me intervals of B that are only covered once? For example, if I had: ``` A 1...
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C: Question: Pheatmap annotation by
Malcolm.Cook • 1.1k
glad you figured this out... I had the same problem... did not realize that the rownames of the c...
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C: no alignment from plasma derived small RNA by
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You seem to have used `mirna.fa` during trimming, which presumably has the kit specific adapter y...
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They forgot unmapped reads!!!! Please use these: > samtools view -c alignment.bam -F 16 -F 4 ...
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C: Normalization across different single cell RNAseq experimetns by
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Of course, there would be a hierarchy of variation: variation between studies , and variation wit...
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Without code it is hard to debug. Please also consider to change the title, all-uppercase is cons...
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C: Normalization across different single cell RNAseq experimetns by
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Sorry, I must not be explaining this clearly enough. Each study is a big batch - we target the va...
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C: Normalization across different single cell RNAseq experimetns by
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No, because batch effects are there and cannot be corrected by simply ignoring them.
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Use [ENA directly][1], is faster. Anyway, if you want to use `sra-toolkit` in Debian 7 you can tr...
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