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3
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4.2k
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1
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PLINK error locus has more than 2 alleles
gwas snps plink written 4.5 years ago by biogirl • 170 • updated 3 days ago by Runen • 0
6
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4
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5 follow
4
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GWAS on dosage data - interaction
gwas interaction snp written 5.2 years ago by Abdel • 350 • updated 5 days ago by joeyinjie • 0
2
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0
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262
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0
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Calculate disease risk based on the genoytype of some SNPs?
prsice gwas prs plink snp written 29 days ago by Miguel • 0 • updated 15 days ago by Biostar ♦♦ 20
2
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1
answer
97
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1
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Duplicate Variant IDs Issue
gwas plink snp written 16 days ago by goodmb • 0 • updated 16 days ago by chrchang523 ♦ 5.5k
4
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1
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1.6k
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1
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Where to find p-values for GWAS articles
p-value gwas written 3.8 years ago by entheologist33 • 80 • updated 17 days ago by Biostar ♦♦ 20
2
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0
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420
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0
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Plink 1.9 "File read failure" error when merging with --bmerge
gwas plink error written 6 months ago by svendula • 20 • updated 17 days ago by Juan Manuel Berros • 80
2
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0
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77
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0
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News: Bioinformatic courses in Canada (Quebec City) this September
gwas genomics python news R unix written 26 days ago by carlopecoraro2 • 1.2k
1
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1
answer
105
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1
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Removing SNPs with the count allele in 5 (insertion), 6 (deletion) or 7(allele from a reference panel)
gwas imputation plink snp unix written 26 days ago by jongyun.jung • 10 • updated 26 days ago by Pierre Lindenbaum ♦ 122k
0
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1
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80
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1
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Estimate the genomic relationship between Discovery and Target sample in PRS
gwas prs written 5 weeks ago by landscape95 • 160 • updated 4 weeks ago by Sam • 2.4k
1
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0
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722
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0
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Odds ratio confidence interval in meta-analysis
gwas plink meta-analysis written 20 months ago by alessandrotestori7 • 330 • updated 5 weeks ago by emma.jones56 • 0
2
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0
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1.1k
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0
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Which simulation software do you recommend to generate SNP if I want to study GWAS, with population structure?
software gwas snp written 2.3 years ago by haohanw • 90 • updated 5 weeks ago by azzaea • 0
0
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0
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145
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0
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GAPIT output explaination
gwas gapit type-i error written 9 weeks ago by tauseef.kiani • 0 • updated 5 weeks ago by Biostar ♦♦ 20
0
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0
answers
67
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0
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loadings threshold in snpzpi flag from adegenet
gwas adegenet written 6 weeks ago by Seb_Lopez • 10
1
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0
answers
106
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0
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Is it ok to use genotype replicates for association studies?
gwas permutation test tassel written 6 weeks ago by rimgubaev • 120
0
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0
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121
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0
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Anyone have experience with crossing methylation markers (CpGs) with SNPs?
gwas ld snp cpg written 6 weeks ago by spela.salamon • 0
0
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0
answers
131
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0
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smartpca doesn't work: number of populations too large.
genome gwas software error smartpca written 11 weeks ago by oi.bioinf • 0 • updated 6 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
137
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0
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Batch effect control in GWAS data.
gwas batch effect gsa omniexpress written 6 weeks ago by saksis.rihards • 10
2
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0
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101
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0
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News: Interested in learning more about GWAS? Course in Canada this September
gwas news pipeline written 6 weeks ago by carlopecoraro2 • 1.2k
1
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0
answers
99
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0
answers
Gene environment interaction model with genetic relation matrix (GRM) as a random covariate
gwas interacion snp gcta written 6 weeks ago by alioniya • 0
1
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1
answer
2.1k
views
1
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polygenic risk score
gwas prs written 3.0 years ago by maki.dur • 0 • updated 7 weeks ago by 2970138204 • 0
2
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0
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111
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0
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How to make association studies using haplotype (LD) blocks instead of SNPs?
snps gwas haplotype ld written 7 weeks ago by rimgubaev • 120
2
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0
answers
144
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0
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How to perform Short Tandem Repeat association analysis from VCF file?
vcf str gwas written 8 weeks ago by bibb77 • 80
2
votes
1
answer
465
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6 follow
1
answer
Job: Seeking Freelance bioinformatician
gwas association burden job written 9 weeks ago by epoceire • 0 • updated 9 weeks ago by iahmed • 10
3
votes
1
answer
138
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5 follow
1
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about GWAS studies and causal variants
gwas snp written 9 weeks ago by Bogdan • 850 • updated 9 weeks ago by WouterDeCoster ♦ 40k
0
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0
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127
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0
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Magma gene-based analysis
gwas gene-based analysis fuma magma written 9 weeks ago by iside • 10
5
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0
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153
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0
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extract genes and functions +/-50kb around a SNP
gwas snp written 9 weeks ago by sonia.olaechea • 90
2
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0
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147
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0
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News: Introduction to GWAS Workshop- Canada 9-13 September 2019
gwas news bioinformatics written 10 weeks ago by carlopecoraro2 • 1.2k
6
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2
answers
756
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5 follow
2
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Why main diagonal of gemma relatedness matrix is not equal to 1
gwas relatedness matrix kinship matrix gemma written 11 months ago by Johan Zicola • 50
0
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0
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165
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0
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Segmentation fault using gemma
gemma gwas written 10 weeks ago by ggman • 80
0
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0
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129
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0
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Which test is applied in order to generate p-values in TASSEL when using Mixed Linear Model?
gwas tassel statistical test written 3 months ago by rimgubaev • 120 • updated 10 weeks ago by Biostar ♦♦ 20
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