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Setting Peak Cutoff Using Minimum # of Reads

reads h3k4me3 chip-seq histone written 6 months ago by Andrew Siladi • 0

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912

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H3K4me3 in promoter regions, which are free of nucleosomes

h3k4me3 promoter chip-seq nucleosome written 17 months ago by panacotaforcota • 0 • updated 17 months ago by ATpoint ♦ 44k

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H3k4me3 near TSS

h3k4me3 chip-seq written 4.3 years ago by abishai.dominic • 0 • updated 4.3 years ago by Carlo Yague ♦ 5.5k

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3.4k

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H3K4Me3 ChIP-Seq signal at promoter

h3k4me3 chip-seq written 5.1 years ago by Dave Tang • 190 • updated 4.3 years ago by abishai.dominic • 0

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Histone modifications data on embryonic stem cells to differentiated stages

h3k4me3 esc h3k4me1 written 4.4 years ago by Chirag Nepal • 2.3k

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1.5k

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Histone Chip-seq (H3K4me3) data from normal/tumor pair.

h3k4me3 tumor-normal chip-seq written 5.0 years ago by Chirag Nepal • 2.3k

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Recent Replies

C: Stringtie transcripts to Gene Name by vkkodali • 2.4k
If I understand correctly, you don't see `GeneID:40027734` (which corresponds to the gene CJI97_0...
C: Stringtie transcripts to Gene Name by shrivadeepak • 0
Thanks for the reply. I do use the same command with -G, but what i get is the reference ids like...
C: Getting "Floating point exception (core dumped)" when running mauveAligner by langziv • 0
Sorry about the delay. These are crazy days. Yes. I'm runnnig 2 assemblies in every run. I just ...
C: Plotting the loading of single PCs (PCAtools) by Kevin Blighe ♦ 69k
Hello again, this should now work in the version that is on GitHub, i.e., selecting just a single...
C: convert ancestry.com text file to vcf by LTDavid • 20
Hi, Mariana. I'm not sure.
C: Problem with design for DESeq2 by i.sudbery ♦ 10k
The more complex a model, the less powerful the analysis is. The `Disease:Patient.n` involves the...
C: Problem with design for DESeq2 by Carlo Yague ♦ 5.5k
Yes, but it is not statistically possible to analyze both the `disease` effect and the `patient` ...
C: should each RNA-seq has Circular RNA? by ATpoint ♦ 44k
I guess so.
C: Problem with design for DESeq2 by 5cantaloupe5 • 0
I tried this and it works but I am getting strange results. If I just use a model without taking ...
C: Problem with design for DESeq2 by 5cantaloupe5 • 0
Doesn't running separate analyses for the diseases go against the DESeq2 recommendation of using ...
C: Problem with design for DESeq2 by 5cantaloupe5 • 0
Ah that was a typo when transferring the table here, good catch. I have fixed it in my original p...
A: Problem with design for DESeq2 by i.sudbery ♦ 10k
Because you have different numbers of patients in each Disease group, you are falling victim to t...

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