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News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 3.5 years ago by Istvan Albert ♦♦ 84k • updated 1 hour ago by Maciej Motyka • 40

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Biostar Handbook, student or professional?

professional handbook student written 8 months ago by Parham • 1.4k

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Make sense filter annotation?

annotation handbook rna-seq ensembl written 13 months ago by domenico.somma • 20

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The Biostar Handbook: A Beginner's Guide to Bioinformatics

handbook written 2.9 years ago by nusrat.bot • 0 • updated 2.9 years ago by genomax ♦ 84k

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News: The Gene Ontology Handbook (open access)

news training handbook go tutorial written 3.5 years ago by Christophe Dessimoz • 650

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Recent Replies

C: FASTQC result FAILED in adapter content and k-mer section!!! by genomax ♦ 84k
I will close the other post.
A: Are there prediction tools that predict tageting miRNAs based on genome sequence by i.sudbery ♦ 7.8k
For most of these tools you can run in two ways. You can either query pre-computed sets of target...
C: FASTQC result FAILED in adapter content and k-mer section!!! by genomax ♦ 84k
Please don't post similar content in multiple threads. Start by reading FastQC blog posts from a...
C: FASTQC result FAILED in adapter content and k-mer section!!! by DC7 • 20
That post is also mine. And I agreed to remove that. Thus, please don't remove this one. And also...
C: FASTQC result FAILED in adapter content and k-mer section!!! by genomax ♦ 84k
Hello DC7! Questions similar to yours can already be found at: FastQ check result ...
C: Looking for a faster way to get doi of pubmed publications by genomax ♦ 84k
NCBI publishes annual PubMed data dumps (and incremental updates) [on their FTP site][1]. You cou...
C: TCGAbiolinks problem downloading ASCAT2 data by berry • 10
Thank you very much, I appreciate it.
C: Error in `[.data.frame`(res.df, , cols) : undefined columns selected when export by Kevin Blighe ♦ 60k
Did you manage to get any further with this? I am limited in what I can do from a distance. Best ...
C: Converting Gene Set names from msigbd to their GO (Gene Ontology) IDs by genomax ♦ 84k
Using [**AmiGO**][1] (so there may be a R equivalent). [1]: http://amigo.geneontology.org/a...
C: Extracting information of interest from R by Friederike ♦ 5.7k
why don't you copy & paste the output of the two lines of code that Kevin posted?
C: NCBI assembly search tool by genomax ♦ 84k
@Neeti, This is indeed an interesting albeit a difficult problem. There is no easy way to do thi...
C: Extracting information of interest from R by silsie645 • 0
I tried this and it seems it was supposed to generate the columns I requested (I am new with R so...

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