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News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 4.0 years ago by Istvan Albert ♦♦ 85k • updated 3 hours ago by Shalu Jhanwar • 470

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Error in example RNA-Seq Example

R deseq rna-seq handbook written 5 months ago by lextallan • 10

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Biostar Handbook, student or professional?

professional handbook student written 14 months ago by Parham • 1.5k

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Make sense filter annotation?

annotation handbook rna-seq ensembl written 19 months ago by domenico.somma • 20

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The Biostar Handbook: A Beginner's Guide to Bioinformatics

handbook written 3.4 years ago by nusrat.bot • 0 • updated 3.4 years ago by GenoMax ♦ 92k

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News: The Gene Ontology Handbook (open access)

news training handbook go tutorial written 3.9 years ago by Christophe Dessimoz • 700

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Recent Replies

C: HMMER software error message by a.mostafa5050 • 0
I removed the back-slash and still gives me the same error message!
C: ClinVar Summary vs. VCF by _r_am ♦ 31k
No, ClinVar does provide documentation on the VCF. See: 1. https://www.ncbi.nlm.nih.gov/clinvar/...
C: HMMER software error message by _r_am ♦ 31k
Your command is incomplete - the `hmmscan` command ends in a back-slash that tells the shell that...
C: Building pangenome reference by kamel • 30
This is not exactly what I wanted to do. From the pangenome of these 151 genomes I found that th...
C: Batch run in R by _r_am ♦ 31k
> it worked but not completely Please explain - what part of it failed?
C: ClinVar Summary vs. VCF by ariel • 110
Perhaps I'm not being clear. Forget the fact that I'm doing anything with the tables. The essence...
C: ABySS vs. MaSuRCA -- opinions by lieven.sterck ♦ 9.0k
ABySS!! but I'm biased :-) , as that is the one I most often use for larger genome. in my experi...
C: Seurat(v3) Integration on multiple dataset by parvathi.sudha • 20
So in that case, the initial normalization for each sample has to be done using SCTransform. Than...
C: How to count the number of alignments in a bam file without using samtools? by steve • 2.6k
dont think I have ever seen a case where people actually use uncompressed bam file, at that point...
C: Explore CNV data from illumina Array by melania 2282 • 100
Thank you, but PennCNV have a very special input, do you know any other program that i can test i...
C: ClinVar Summary vs. VCF by _r_am ♦ 31k
> joining my table ... by genomic co-ordinates Please tell us exactly how you're doing it. Th...
C: How to create a SNP VCF file? by evolozzy • 10
Do you need specifically the SNPs?

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