handbook Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: handbook • reset

or Classic search

480

votes

answers

46k

views

231 follow

answers

News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 3.1 years ago by Istvan Albert ♦♦ 82k

vote

answers

163

views

answers

Biostar Handbook, student or professional?

professional handbook student written 3 months ago by Parham • 1.4k

vote

answers

332

views

5 follow

answers

Make sense filter annotation?

annotation handbook rna-seq ensembl written 8 months ago by domenico.somma • 20

votes

answer

2.0k

views

answer

The Biostar Handbook: A Beginner's Guide to Bioinformatics

handbook written 2.5 years ago by nusrat.bot • 0 • updated 2.5 years ago by genomax ♦ 76k

votes

answers

1.3k

views

6 follow

answers

News: The Gene Ontology Handbook (open access)

news training handbook go tutorial written 3.1 years ago by Christophe Dessimoz • 640

Recent Votes

Recent Locations • All »

Glasgow, Scotland, just now
United States, 1 minute ago
United States, 1 minute ago
Deutschland, 1 minute ago
VIB, Ghent, Belgium, 1 minute ago
King's College London, 1 minute ago

Recent Awards • All »

Scholar to Pierre Lindenbaum ♦ 125k
Scholar to Pierre Lindenbaum ♦ 125k
Scholar to xiaoleiusc • 20
Teacher to alanh • 80
Scholar to Alex Reynolds ♦ 29k
Teacher to ATpoint ♦ 28k

Recent Replies

C: Is it possible to download nr db from NCBI's cloud ? by K.Gee • 10
Thanks for the response. My problem is that im not so familiar with informatics, so I was thinkin...
C: DE genes and variability between biological replicates: edgeR by mariannapauletto • 20
Thank you, sorry for that
A: Ambiguous fields in FANTOM 5 Enhancer_TSS_association.bed file by Corentin • 430
Hi, The file is in the BED12 format: http://genome.ucsc.edu/FAQ/FAQformat.html#format1 . This fo...
C: Is it possible to remove reads from BAM which match the reference at a position by yryan • 0
That worked perfectly, thanks so much for that!
C: Possible reasons mapping percentage abysmally low for miRNA reads? by genomax ♦ 76k
It is certainly possible that you have bad/less than optimal data. If you get a similar result wi...
C: Google Summer of Code 2020 announced for mentor organisations by Emily_Ensembl ♦ 20k
Mentor applications are now open and will be open until 5th February.
C: Possible reasons mapping percentage abysmally low for miRNA reads? by Cookie-san • 40
So you think the problem is with the aligner and not the data? I will try bbmap.sh as you suggest...
C: Possible reasons mapping percentage abysmally low for miRNA reads? by genomax ♦ 76k
If you are willing to try a different aligner then you could try using `bbmap.sh` with these para...
C: Case control status permutation in GWAS by German.M.Demidov • 1.2k
Aren't you supposed to calculate p-values from the permuted data? And then just use Manhattan plot?
C: GATK HaplotypeCaller/GenotypeGVCFs assigning GQ 0 and GT ./. at well-covered, hi by Dataman • 310
I have also recently encountered this problem. Did you find out the answer to your question? It s...
C: Possible reasons mapping percentage abysmally low for miRNA reads? by Cookie-san • 40
mapper.pl from miRDeep2 uses bowtie (1). Seed length is 18bp, and it allows no mismatch in this a...
C: Possible reasons mapping percentage abysmally low for miRNA reads? by genomax ♦ 76k
What aligner are you using? Is it doing ungapped alignments as would be needed for reads ~18 bp?

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1901 users visited in the last hour