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News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 6 months ago by Istvan Albert ♦♦ 71k • updated 3 hours ago by kenanh • 10

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News: The Gene Ontology Handbook (open access)

news training handbook go tutorial written 6 months ago by Christophe Dessimoz • 390

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Recent Replies

C: Why ExAC used bwa aln instead of mem? by abascalfederico • 940
I'll send them an email, thanks for the suggestion. Regarding the use of bwa aln, I found it in t...
C: Why ExAC used bwa aln instead of mem? by Ram ♦ 11k
If you can cite your source for this, that'd be great. I'm sure Daniel MacArthur's team would be ...
C: Error PacBio SMRT Link by jacobnix • 0
Hello WouterDeCoster , sorry , I will keep it in mind thank you !! :D
A: sorting bowtie2 results using samtools sort by ggman • 0
import samtools import Since 0.1.4, this command is an alias...
C: sorting bowtie2 results using samtools sort by ggman • 0
it ran on an older version of [samtools][1] at some point or something like that. Actually... I t...
A: Input all the ranked genes into pre-ranked GSEA? by assaron • 40
While you indeed can input all your genes into GSEA, personally usually select top 12000 expresse...
C: sorting bowtie2 results using samtools sort by Pierre Lindenbaum ♦ 95k
what is [samtools import][1] ? [1]: http://www.htslib.org/doc/samtools.html
C: Reads for assembly by glady • 190
I want to download reads for a bacterial genome, it can be of any sequencing platform doesn't mat...
C: Error PacBio SMRT Link by WouterDeCoster ♦ 19k
I added markup to your post for increased readability. You can do this by selecting the text and ...
C: Closest gene to set of intervals by rbronste • 110
Does this negate the need for a -b file and pulls straight from a reference genome? Or you still ...
C: LASTZ does not accept/like "-" (dash) in Fasta file by Rohit • 1.1k
I agree, this would destroy the original file - horrible experiences with sed -i and grep > (i...
C: LASTZ does not accept/like "-" (dash) in Fasta file by Rohit • 1.1k
You can use sed to replace the file first, `sed -e '/^[agctn]/ s/-/n/g' file1.fa >file2.fa` A...

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