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News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 2.9 years ago by Istvan Albert ♦♦ 81k • updated 3 hours ago by zoeywilson141 • 0

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Biostar Handbook, student or professional?

professional handbook student written 10 days ago by Parham • 1.4k

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Make sense filter annotation?

annotation handbook rna-seq ensembl written 5 months ago by domenico.somma • 20

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The Biostar Handbook: A Beginner's Guide to Bioinformatics

handbook written 2.3 years ago by nusrat.bot • 0 • updated 2.3 years ago by genomax ♦ 72k

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News: The Gene Ontology Handbook (open access)

news training handbook go tutorial written 2.8 years ago by Christophe Dessimoz • 590

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Recent Replies

C: Processing gene expression data by ATpoint ♦ 24k
I think everything prefixed `MGM` is mouse, and the rest `1B`/ `3A` is human. Simply click the `G...
C: What is the -nct alternative in GATK 4.0.0.0? by raf.marcondes • 0
I'm having the same problem as reported here. Is the current "solution" still that it's not feasi...
C: Processing gene expression data by Natasha • 30
Many thanks for the response. Yes, the raw CEL files are available [here][1]. The figure 1 that ...
C: What is the -nct alternative in GATK 4.0.0.0? by ATpoint ♦ 24k
Please use `Add comment` and not the answer box for comments.
A: What is the -nct alternative in GATK 4.0.0.0? by raf.marcondes • 0
I'm having the same problem as reported here. Is the current "solution" still that it's not feasi...
C: the gtf file for cow by yueli7 • 40
Thanks shoujin.gu, the names in GTF and FASTA files: of vilion-Desktop-590-p0xxx:~/STAR-2.7.0e...
C: Use of export command by caro-ca • 0
I notice that when I open another terminal, the echo $BUSCO_CONFIG_FILE doesn't tell me the paths...
A: Processing gene expression data by c.chakraborty • 140
Isn't there access to raw .CEL files for you to work on? Plus which paper, could you please share...
C: How does base quality / mapping quality affect germline calling by CY • 410
Thanks for the clarification. The appearance is multiple mismatch with VAF = 1 within short windo...
C: Processing gene expression data by ATpoint ♦ 24k
It is the CEL files under `GSE1133` at the bottom of the page. Under `GSE1133_RAW.tar` press `Cus...
C: Annotating dbnsfp by SnpSift on a cluster by Brice Sarver • 3.0k
What error are you getting? What scheduler/workload manager are you submitting to?
C: How does base quality / mapping quality affect germline calling by ATpoint ♦ 24k
Just fyi, mappability is something different than you seem to think. Of course the MAPQ is influe...

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