handbook Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: handbook • reset

or Classic search

454

votes

answers

39k

views

215 follow

answers

News: The Biostar Handbook. A bioinformatics e-book for beginners.

tutorial news training handbook written 2.6 years ago by Istvan Albert ♦♦ 80k • updated 4 hours ago by chantelmarshal321 • 0

vote

answers

177

views

5 follow

answers

Make sense filter annotation?

annotation handbook rna-seq ensembl written 10 weeks ago by domenico.somma • 20

votes

answer

1.7k

views

answer

The Biostar Handbook: A Beginner's Guide to Bioinformatics

handbook written 2.0 years ago by nusrat.bot • 0 • updated 2.0 years ago by genomax ♦ 69k

votes

answers

1.1k

views

6 follow

answers

News: The Gene Ontology Handbook (open access)

news training handbook go tutorial written 2.6 years ago by Christophe Dessimoz • 540

Recent Votes

Recent Locations • All »

Germany, 2 minutes ago
Sweden, 3 minutes ago
Philadelphia, PA, 3 minutes ago

Recent Awards • All »

Good Answer to WouterDeCoster ♦ 40k
Teacher to jrj.healey ♦ 13k
Scholar to jrj.healey ♦ 13k
Teacher to genomax ♦ 69k
Scholar to genomax ♦ 69k
Appreciated to ATpoint ♦ 19k

Recent Replies

C: Parallelization to compute correlations by Kevin Blighe ♦ 45k
Vincent, I have edited my answer. Please read it again (at the top). Another user identified a be...
C: Parallel processing in R by Kevin Blighe ♦ 45k
Thank you again for this. I think that *fastcor* is a very useful package to emphasise in this th...
C: pheatmap: how to use legend information as row annotation? by Kevin Blighe ♦ 45k
Yes, it will take 1 day to switch, if you have that time. However, once you move, you will never ...
C: scRNAseq: Split FASTQ into cell specific FASTQ Files by Friederike ♦ 4.5k
...meaning you're limited to detecting (exonic) variants close to the TES
A: Is there some good software to align/compare fasta sequences in my PC by brian.fristensky • 30
[The BIRCH system][1] includes lots of popular tools for sequence tasks. In particular, see the [...
C: Fixing batch effect with seurat integrate by igor ♦ 8.0k
`colSums(GetAssayData(su,assay="integrated")>0)` does not give you number of detected genes. I...
A: scRNAseq: Split FASTQ into cell specific FASTQ Files by igor ♦ 8.0k
If you want to call variants from 10x data, there is a specialized tool by 10x that is optimized ...
A: scRNAseq: Split FASTQ into cell specific FASTQ Files by swbarnes2 ♦ 6.0k
You could split on the CB tag, but coverage in single cell datasets is so poor, you aren't going ...
C: Mapping quality in Oxford Nanopore by ATpoint ♦ 19k
Even if you have many low-quality bases, it is extremely unlikely that a multi-kb long read will ...
C: How to use NCBI Gnomon? by xieshaojun0621 • 130
Hi @sunny_shen312, did you have any findings to update this topic? Thanks.
A: How can I align two proteomes? by h.mon ♦ 26k
You don't describe your data in detail, so I will assume you want to find the orthologous protein...
C: Pipe SamToFastq, BWA mem not working by aalith • 0
Could abbysue's problem be due to the fact that it's running inside docker and not on the local m...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1604 users visited in the last hour