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WARN in GATK HaplotypeCaller
haplotypecaller gatk snp written 2.8 years ago by Siavash Salek Ardestani20 • updated 2 days ago by Biostar ♦♦ 20
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Pararellization in GATK 4
haplotypecaller gatk multi-threading written 15 months ago by raf.marcondes40 • updated 6 weeks ago by a.alnawfal.1992110
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Error: Could not find or load main class -Xmx4g
haplotypecaller gatk xmx4g snp written 8 months ago by Adriel Rosa0 • updated 4 months ago by larryhems0
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Does HaploypeCaller detects somatic mutations also?
haplotypecaller exome mutation somatic germline written 5 months ago by svp280 • updated 5 months ago by WouterDeCoster45k
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Improve the speed of Haplotypecaller
vcf gatk haplotypecaller bam written 8 months ago by gubrins60 • updated 8 months ago by Pierre Lindenbaum132k
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StrandBiasBySample error Haplotypecaller
haplotypecaller gatk strandbiasbysample written 8 months ago by gubrins60 • updated 8 months ago by Pierre Lindenbaum132k
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Cannot run HaplotypeCaller in GATK
haplotypecaller gatk groups snp read written 10 months ago by ImBioMario0 • updated 10 months ago by devarora240
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non-reference allele didn't be called into vcf by HC
haplotypecaller vcf written 15 months ago by CY550 • updated 15 months ago by Kevin Blighe69k
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GATK -Xmx4G and -Xmx8G
haplotypecaller gatk bioinformatics written 18 months ago by fteenzofteenzo20 • updated 18 months ago by andrew.j.skelton736.1k
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Difference in Haplotypecaller in GATKv4 Vs Gatk3.7
haplotypecaller gatk written 2.2 years ago by Nandini890 • updated 2.2 years ago by lffu_003260
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