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Cannot run HaplotypeCaller in GATK
haplotypecaller gatk groups snp read written 4 weeks ago by ImBioMario0 • updated 4 weeks ago by devarora120
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non-reference allele didn't be called into vcf by HC
haplotypecaller vcf written 5 months ago by CY470 • updated 5 months ago by Kevin Blighe56k
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GATK -Xmx4G and -Xmx8G
haplotypecaller gatk bioinformatics written 9 months ago by alhamidi.reem10 • updated 9 months ago by andrew.j.skelton735.9k
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Difference in Haplotypecaller in GATKv4 Vs Gatk3.7
haplotypecaller gatk written 17 months ago by Nandini840 • updated 17 months ago by lffu_003240
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Why a true variant is not getting called by Haplotypecaller.
variant-calling haplotypecaller next-gen written 4.0 years ago by AshishKS10 • updated 21 months ago by Biostar ♦♦ 20
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GATK HaolotypeCaller takes too much time for variant calling
haplotypecaller gatk long written 2.4 years ago by J.F.Jiang800 • updated 22 months ago by YaGalbi1.5k
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WARN in GATK HaplotypeCaller
haplotypecaller gatk snp written 24 months ago by Siavash Salek Ardestani20 • updated 24 months ago by RamRS26k
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Using gVCF mode in HaplotypeCaller ( GATK4)
gatk4 haplotypecaller snp written 2.2 years ago by ahmad mousavi470 • updated 2.2 years ago by JJ500
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Strategy for processing ancient DNA
haplotypecaller adna written 2.7 years ago by Ghani0 • updated 2.6 years ago by the_smiao0
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Java memory issue in GATK
haplotypecaller gatk java written 3.0 years ago by boymin202020 • updated 3.0 years ago by genomax80k
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vcf files in gatk not showing data lines
haplotypecaller gatk indel snp written 4.0 years ago by jamessemaj71210 • updated 3.9 years ago by Biostar ♦♦ 20
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