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SHAPEIT - getting 'Segmentation fault'

shapeit haplotyping haplotype phasing written 20 months ago by Larson • 0

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845

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Where is "inference" applied in Haplotype inference?

haplotyping haplotype phase inference phasing written 3.8 years ago by veronicaschroeder78 • 110

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818

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Whole Genome Haplotyping

genome assembly haplotyping sequencing written 3.9 years ago by torkel.loman • 0 • updated 3.8 years ago by Biostar ♦♦ 20

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how long does haploview take to run?

haplotyping haploview written 5.3 years ago by lalir • 10

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Viral haplotyping using pair end information

viral haplotyping written 5.3 years ago by lovett05 • 0

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Recent Replies

C: Duplicate reads versus unmapped reads by pkallurkar • 0
You just made my day. Thanks a ton.
C: Duplicate reads versus unmapped reads by GenoMax ♦ 95k
If you have ~22 M mapped reads in that worst sample then all data should be OK. That is good news...
C: Get list of gene signatures published by igor ♦ 12k
It's unfortunate that the main output of the paper is not more clearly described. Curiously, not...
C: Duplicate reads versus unmapped reads by pkallurkar • 0
The genome is the mouse genome (mm10). The sample with ~70% unmapped reads has ~21.5M uniquely al...
C: Error in Saving Files by anasjamshed1994 • 60
It's python 3, not Python 2. I am used to with Jupiter notebook and thonny
C: Duplicate reads versus unmapped reads by GenoMax ♦ 95k
Some samples have very high (70% unmapped) reads so not sure how that is going to affect your dow...
C: Duplicate reads versus unmapped reads by pkallurkar • 0
That's a bummer. Thanks for the reply. Is the data still usable though?
C: Duplicate reads versus unmapped reads by GenoMax ♦ 95k
Those reads are not useful. Perhaps they are a side effect of SMRTseq. So your `STAR` result may ...
C: STAR-fusion on galaxy by avelarbio46 • 10
I tried, but there is no tutorial about it, and no information also. I got many errors, including...
C: Strategy for sequencing genomes of nascent polyploid species by samuel.a.odonnell • 70
If you are after long reads, epigenetic modifications and haplotype phasing, i would say ONT woul...
A: Augustus Parsing Loci names and gene names from a Gene bank file format by h.mon ♦ 32k
Did you copy / paste the perl code directly from the pdf? The problem is you have one (two, actua...
C: Duplicate reads versus unmapped reads by pkallurkar • 0
I'm still running mapping for rRNA fasta. But I noticed something in one of the unmapped reads th...

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