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Recent Replies
Comment: X amino acid in ensembl
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GenoMax
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`ENSMEUP00000002410` identifier s[eems to be pulling up][1] *Tammar wallaby* entries.
[1]: http://www.ensembl.org/Multi/Search/Results?…
Comment: Tools for hard trimming?
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v.berriosfarias
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the primers are part of the read? didnt know that, I was concerned about the adapters, but the fastqc report show no info of adapter sequen…
Answer: Phylobayes, Tracecomp Output Interpretation
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Hello!
I still have the same question. I am running molecular dating analyses with Phylobayes and some of the parameters have converged b…
Comment: Multiqc raises the "cannot import name 'gcd' from 'fractions'" error
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sabbirakhand25
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Thanks for the help.
Comment: bulk RNA-seq contamination, lung ambient RNA
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What makes you think these are contaminating reads from non-T cells rather than the result of location-specific expression? If your sort lo…
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> Ran out of data in the middle of a fastq entry. Your file is probably
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That is not good news. It appears that your trimmed…
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how big is your data? how many reads do you have. trimmomatic is fairly efficient and fast - but in the end it all depends on the amount of…
Comment: Trimmomatic-0.36 not finding adapter directory
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Hi, thank you for the reply. I tried your path idea and it worked, with no error messages following. However, my terminal was unresponsive …
Comment: File conversion from coordinates to genes
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storm1907
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Yes, I try to convert empty space to string, but without success:
awk 'BEGIN {OFS=FS="\t"} {gsub(/" "/,"na",$4)}1' $file > $outfile1
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Because you have gene names missing from some of your rows you are getting that error.
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TriS
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thank you, yes, I added some extra info above to help. the main point is that working with immunologists they always want to know the abund…
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Hi @ram
Sorry for the delay. My vpn contract ended and had to renew it. So, I see the problem. After running the code `system(paste0("cat…
Comment: File conversion from coordinates to genes
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storm1907
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Thank you!
However, when running the last script, I got this error:
Traceback (most recent call last):
File "reverse_map.py…
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Can you post the output of `conda list`? That will help me track down the versions of networkx that need to have their metadata patched.
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I've moved the helpful comments to answers. Please accept the answer(s) that helped you solve your problem. To accept an answer, click the …
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