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123 results • Page
1 of 3
Sort: Views
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Views
Votes
Replies
2
votes
0
replies
1.1k
views
Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
10 months ago by
Biostar
2.7k
7
votes
1
reply
1.0k
views
Herald:
The Biostar Herald for Wednesday, June 02, 2021
herald
updated 2.9 years ago by
Istvan Albert
100k • written 2.9 years ago by
Biostar
2.7k
3
votes
1
reply
883
views
Herald:
The Biostar Herald for Tuesday, December 27, 2022
herald
updated 16 months ago by
LChart
3.9k • written 16 months ago by
Biostar
2.7k
1
vote
2
replies
854
views
Herald:
The Biostar Herald for Monday, January 24, 2022
herald
updated 2.2 years ago by
Mensur Dlakic
★ 27k • written 2.2 years ago by
Biostar
2.7k
1
vote
0
replies
831
views
Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by
Biostar
2.7k
3
votes
0
replies
827
views
Herald:
The Biostar Herald for Thursday, May 11, 2023
herald
11 months ago by
Biostar
2.7k
5
votes
1
reply
820
views
Herald:
The Biostar Herald for Monday, May 01, 2023
herald
updated 11 months ago by
cmdcolin
★ 3.8k • written 11 months ago by
Biostar
2.7k
3
votes
0
replies
819
views
Herald:
The Biostar Herald for Tuesday, November 23, 2021
herald
2.4 years ago by
Biostar
2.7k
2
votes
2
replies
791
views
Herald:
The Biostar Herald for Monday, May 02, 2022
herald
updated 24 months ago by
Istvan Albert
100k • written 24 months ago by
Biostar
2.7k
1
vote
0
replies
787
views
Herald:
The Biostar Herald for Wednesday, August 02, 2023
herald
8 months ago by
Biostar
2.7k
2
votes
1
reply
786
views
Herald:
The Biostar Herald for Monday, January 16, 2023
herald
updated 15 months ago by
seidel
11k • written 15 months ago by
Biostar
2.7k
2
votes
0
replies
765
views
Herald:
The Biostar Herald for Monday, June 05, 2023
herald
10 months ago by
Biostar
2.7k
3
votes
0
replies
744
views
Herald:
The Biostar Herald for Monday, April 10, 2023
herald
12 months ago by
Biostar
2.7k
4
votes
1
reply
733
views
Herald:
The Biostar Herald for Monday, August 28, 2023
herald
updated 7 months ago by
Jesse
▴ 740 • written 8 months ago by
Biostar
2.7k
1
vote
1
reply
732
views
Herald:
The Biostar Herald for Monday, January 03, 2022
herald
updated 2.3 years ago by
Jeremy Leipzig
22k • written 2.3 years ago by
Biostar
2.7k
2
votes
0
replies
718
views
Herald:
The Biostar Herald for Monday, April 24, 2023
herald
12 months ago by
Biostar
2.7k
1
vote
0
replies
717
views
Herald:
The Biostar Herald for Wednesday, February 15, 2023
herald
14 months ago by
Biostar
2.7k
4
votes
1
reply
717
views
Herald:
The Biostar Herald for Monday, October 24, 2022
herald
updated 18 months ago by
shelkmike
★ 1.2k • written 18 months ago by
Biostar
2.7k
5
votes
0
replies
709
views
Herald:
The Biostar Herald for Monday, May 16, 2022
herald
23 months ago by
Biostar
2.7k
1
vote
0
replies
707
views
Herald:
The Biostar Herald for Monday, April 17, 2023
herald
12 months ago by
Biostar
2.7k
2
votes
1
reply
700
views
Herald:
The Biostar Herald for Tuesday, March 22, 2022
herald
updated 2.1 years ago by
dariober
14k • written 2.1 years ago by
Biostar
2.7k
3
votes
0
replies
699
views
Herald:
The Biostar Herald for Monday, January 02, 2023
herald
15 months ago by
Biostar
2.7k
2
votes
0
replies
699
views
Herald:
The Biostar Herald for Monday, February 06, 2023
herald
14 months ago by
Biostar
2.7k
2
votes
0
replies
697
views
Herald:
The Biostar Herald for Monday, March 13, 2023
herald
13 months ago by
Biostar
2.7k
3
votes
0
replies
693
views
Herald:
The Biostar Herald for Tuesday, October 26, 2021
herald
updated 2.5 years ago by
Istvan Albert
100k • written 2.5 years ago by
Biostar
2.7k
5
votes
0
replies
693
views
Herald:
The Biostar Herald for Tuesday, June 08, 2021
herald
updated 2.9 years ago by
Istvan Albert
100k • written 2.9 years ago by
Biostar
2.7k
3
votes
0
replies
688
views
Herald:
The Biostar Herald for Monday, December 19, 2022
herald
16 months ago by
Biostar
2.7k
7
votes
1
reply
682
views
Herald:
The Biostar Herald for Monday, November 14, 2022
herald
updated 17 months ago by
cmdcolin
★ 3.8k • written 17 months ago by
Biostar
2.7k
2
votes
0
replies
682
views
Herald:
The Biostar Herald for Monday, February 20, 2023
herald
14 months ago by
Biostar
2.7k
2
votes
0
replies
674
views
Herald:
The Biostar Herald for Wednesday, August 09, 2023
herald
8 months ago by
Biostar
2.7k
1
vote
0
replies
661
views
Herald:
The Biostar Herald for Monday, September 12, 2022
herald
19 months ago by
Biostar
2.7k
2
votes
0
replies
659
views
Herald:
The Biostar Herald for Monday, May 23, 2022
herald
updated 23 months ago by
Rob
6.5k • written 23 months ago by
Biostar
2.7k
1
vote
0
replies
658
views
Herald:
The Biostar Herald for Monday, November 15, 2021
herald
2.4 years ago by
Biostar
2.7k
2
votes
1
reply
658
views
Herald:
The Biostar Herald for Monday, February 07, 2022
herald
updated 2.2 years ago by
Dunois
★ 2.5k • written 2.2 years ago by
Biostar
2.7k
0
votes
0
replies
656
views
Herald:
The Biostar Herald for Friday, August 27, 2021
herald
2.7 years ago by
Biostar
2.7k
2
votes
0
replies
656
views
Herald:
The Biostar Herald for Tuesday, February 28, 2023
herald
14 months ago by
Biostar
2.7k
5
votes
0
replies
644
views
Herald:
The Biostar Herald for Monday, April 03, 2023
herald
12 months ago by
Biostar
2.7k
1
vote
0
replies
643
views
Herald:
The Biostar Herald for Tuesday, October 05, 2021
herald
2.6 years ago by
Biostar
2.7k
3
votes
0
replies
643
views
Herald:
The Biostar Herald for Wednesday, July 27, 2022
herald
updated 21 months ago by
Istvan Albert
100k • written 21 months ago by
Biostar
2.7k
2
votes
0
replies
641
views
Herald:
The Biostar Herald for Monday, January 09, 2023
herald
15 months ago by
Biostar
2.7k
3
votes
0
replies
640
views
Herald:
The Biostar Herald for Monday, June 06, 2022
herald
22 months ago by
Biostar
2.7k
2
votes
0
replies
639
views
Herald:
The Biostar Herald for Monday, October 31, 2022
herald
18 months ago by
Biostar
2.7k
3
votes
0
replies
636
views
Herald:
The Biostar Herald for Friday, September 03, 2021
herald
2.6 years ago by
Biostar
2.7k
1
vote
0
replies
633
views
Herald:
The Biostar Herald for Monday, November 01, 2021
herald
2.5 years ago by
Biostar
2.7k
2
votes
0
replies
630
views
Herald:
The Biostar Herald for Tuesday, March 28, 2023
herald
13 months ago by
Biostar
2.7k
2
votes
1
reply
629
views
Herald:
The Biostar Herald for Monday, November 28, 2022
herald
updated 17 months ago by
Istvan Albert
100k • written 17 months ago by
Biostar
2.7k
1
vote
0
replies
628
views
Herald:
The Biostar Herald for Tuesday, July 19, 2022
herald
21 months ago by
Biostar
2.7k
3
votes
0
replies
627
views
Herald:
The Biostar Herald for Tuesday, September 21, 2021
herald
2.6 years ago by
Biostar
2.7k
4
votes
0
replies
626
views
Herald:
The Biostar Herald for Friday, July 02, 2021
herald
updated 2.8 years ago by
natay
20 • written 2.8 years ago by
Biostar
2.7k
2
votes
0
replies
622
views
Herald:
The Biostar Herald for Monday, August 01, 2022
herald
21 months ago by
Biostar
2.7k
123 results • Page
1 of 3
Recent Votes
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
Comment: To get p-values for the TPM
A: Where To Download Pam50 Gene Set?
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Recent Awards •
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Popular Question
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Simone
▴ 10
Popular Question
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carlopecoraro2
★ 2.5k
Popular Question
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daffodil
▴ 10
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▴ 500
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camillab.
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Recent Replies
Comment: Why cd-hit-est not work when sequence identity threshold<0.95?
by
Dateline
• 0
So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
Answer: Heatmap and rna-seq
by
Kevin Blighe
87k
Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap. You hav…
Comment: Clustering of DAVID gene enrichment results from gene expression studies
by
Kevin Blighe
87k
You will have to elaborate on what is the error
Comment: clustalo - align milions of short seq, memory issue
by
emmanouil.a
▴ 120
Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
Comment: Annovar using R package
by
Pierre Lindenbaum
161k
duplicate of your previous question: https://www.biostars.org/p/9592646/ why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation
by
Lissa Cruz Saavedra
• 0
Hi I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file
by
swbarnes2
14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model
by
biochugs
• 0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed)
by
Jeremy
▴ 890
You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
DKA
▴ 40
I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
Comment: PCA plot (Suggestions Needed)
by
Mensur Dlakic
★ 27k
Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model
by
Mensur Dlakic
★ 27k
It is a good idea, though I don't see how it would work in practice. I think you will encounter at least one additional problem on top of …
Answer: PCA plot (Suggestions Needed)
by
Jeremy
▴ 890
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file
by
GenoMax
141k
@yokofakun had written this: https://www.biostars.org/p/336965/ https://github.com/ruqianl/appendCB may also be useful.
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