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Techniques for finding tumor purity from Oncomine panel?

heterogeneity oncomine oncology purity written 10 days ago by taylor.falk3 • 0

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2.5k

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How to make this kind of 3-D plotting for cancer subclones ? (picture attached)

heterogeneity subclone cancer written 4.4 years ago by newDNASeqer • 600 • updated 23 months ago by Biostar ♦♦ 20

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833

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Definition and formula of methylation heterogeneity

heterogeneity methylation written 2.5 years ago by Shicheng Guo • 6.9k

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1.1k

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general question about "intra tumor heterogeneity"

heterogeneity cancer type written 3.8 years ago by imagineyd • 60 • updated 3.8 years ago by a.polo88 • 100

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982

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tumor heterogeneity target capture

heterogeneity tumor target capture sequencing written 4.4 years ago by cristinam09 • 20 • updated 4.2 years ago by Biostar ♦♦ 20

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Recent Replies

A: How to add help function in a snakemake file by dariober ♦ 9.6k
One option may be to print the help when a given configuration key is given, for example `help`: ...
C: How can I fix picard error: Sequences at index 0 don't match by Niek De Klein • 2.4k
head -n30 /apps/data//ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_24/GRCh38.p5.geno...
C: How can I fix picard error: Sequences at index 0 don't match by finswimmer ♦ 6.2k
Hello again, could you post the content of the index file for the reference genome (the one endi...
C: How to separate a strain of MTB drug wise? by rizoic • 80
A simplistic tweak would be to change the condition on these lines tail -n +2 data.txt |\ ...
C: How can I fix picard error: Sequences at index 0 don't match by Niek De Klein • 2.4k
Yes the path exists and the double / is not a problem. If the reference file can not be found it ...
C: Missing sequences in local NT database by Prakki Rama • 2.2k
Actually, this is not straight forward. Downloading large files is timing out. So, for now, I jus...
C: Improving efficiency for a looping, mathematical script by Volka • 30
That's right, we are indeed trying to get every single possible combination, whether they are rea...
A: Does TSS = first exon? by yuktichopra675 • 0
Most issues on a MAC related to the printer can be resolved by “Resetting the printing system”. T...
C: Improving efficiency for a looping, mathematical script by Michael Dondrup ♦ 44k
> When ramping up to 22 SNPs however, the input file with the SNP > combinations goes up to...
C: How to separate a strain of MTB drug wise? by angelshiza • 10
Great i was able to extract xdr and preXdr. But now when im doing it for MDr im getting others as...
C: Improving efficiency for a looping, mathematical script by Michael Dondrup ♦ 44k
Please do the test on an small file with 10 lines of genotypes (genetic profiles), the number of ...
C: Improving efficiency for a looping, mathematical script by Volka • 30
Hi, thanks for the reply! I was able to test the script out with a small input file, up to 15 SNP...

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