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Intra-tumor Heterogeneity / Mutation Cellular Fraction in TCGA Data

heterogeneity tcga written 5 weeks ago by Noushin N • 530

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181

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Techniques for finding tumor purity from Oncomine panel?

heterogeneity oncomine oncology purity written 4 months ago by taylor.falk3 • 0

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How to make this kind of 3-D plotting for cancer subclones ? (picture attached)

heterogeneity subclone cancer written 4.8 years ago by newDNASeqer • 630 • updated 2.3 years ago by Biostar ♦♦ 20

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Definition and formula of methylation heterogeneity

heterogeneity methylation written 2.8 years ago by Shicheng Guo • 7.4k

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1.1k

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general question about "intra tumor heterogeneity"

heterogeneity cancer type written 4.2 years ago by imagineyd • 70 • updated 4.2 years ago by a.polo88 • 100

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tumor heterogeneity target capture

heterogeneity tumor target capture sequencing written 4.7 years ago by cristinam09 • 20 • updated 4.5 years ago by Biostar ♦♦ 20

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Recent Replies

A: Difficulty in Host removal by Bowtie2,samtools and bedtools by Antonio R. Franco • 4.0k
It is sort of hard to understand your questions but if you want to filter your library, take a lo...
C: Extract Reads From A Bam File That Fall Within A Given Region by jana • 10
Without -h output.BAM has a header but IGV will not show any reads. In my case was necessary to a...
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by Kevin Blighe ♦ 37k
Thanks, I will try to take a look later. Out of curiosity, you see your 7th column in the PED fil...
C: Test Whether The Variance In A Group Is Lower Than In Another by A. Domingues • 1.8k
Hi Giovanni, how did you end up solving this? I ran into a very similar [problem](https://www.bio...
C: Removing duplicated mutations from a txt by zx8754 ♦ 6.5k
There error message from dndscv is not about `unique` issue. Do not remove duplicates, dndscv kee...
C: GO annotation file for hsa genes by arup • 850
If a solution involving R will be helpful you can try "[EnrichmentBrowser][1]" package. Tutorial...
A: Difficulty in Host removal by Bowtie2,samtools and bedtools by WouterDeCoster ♦ 36k
> 1. Can anyone suggest a way to check where I am doing wrong.Can we > convert SAM fil...
C: Automating Trimmomatic for total Noobs by WouterDeCoster ♦ 36k
Feel free to come back with your questions - we're happy to help you and point you in the directi...
C: Difficulty in Host removal by Bowtie2,samtools and bedtools by arup • 850
Can you share the commands you are using?
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
Command i ran :- plink --file input --assoc --out result
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
This is the .map data:- 1 BS00033749_51 -9 13 1 BS00100774_51 -9 13 1 BobWhite_c1...
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
This is the .ped data:- -9 450975 -9 -9 -9 2 A A C C G G C C A A G G T T A A C C C C A A ...

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