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Heterogeneity from bulk ChIP-seq or ATAC-seq data

heterogeneity chip-seq atac-seq clustering written 29 days ago by msimmer92 • 210 • updated 29 days ago by jared.andrews07 • 4.1k

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122

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Single Sample Tumour/Neoantigen Heterogeneity/Clonal Analysis & Phylogenetic Trees

phylogeny neoantigen heterogeneity genomics cancer written 8 weeks ago by TLOA3 • 0

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212

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Tools that make mutation based phylogenetic tree figure

phylogenetic heterogeneity written 7 months ago by CY • 460

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226

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Intra-tumor Heterogeneity / Mutation Cellular Fraction in TCGA Data

heterogeneity tcga written 10 months ago by Noushin N • 560

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368

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Techniques for finding tumor purity from Oncomine panel?

heterogeneity oncomine oncology purity written 14 months ago by taylor.falk3 • 0

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2.9k

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How to make this kind of 3-D plotting for cancer subclones ? (picture attached)

heterogeneity subclone cancer written 5.6 years ago by newDNASeqer • 650 • updated 3.1 years ago by Biostar ♦♦ 20

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1.1k

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Definition and formula of methylation heterogeneity

heterogeneity methylation written 3.6 years ago by Shicheng Guo • 7.8k

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1.3k

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general question about "intra tumor heterogeneity"

heterogeneity cancer type written 5.0 years ago by imagineyd • 70 • updated 5.0 years ago by a.polo88 • 100

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tumor heterogeneity target capture

heterogeneity tumor target capture sequencing written 5.5 years ago by cristinam09 • 20 • updated 5.3 years ago by Biostar ♦♦ 20

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A: Using xargs to tabix each line of a bed to a vcf by ATpoint ♦ 26k
THe syntax of tabix is wrong. It needs to be `tabix (options) file.vcf.gz {regions}`: awk '{...
C: Using xargs to tabix each line of a bed to a vcf by massa.kassa.sc3na • 160
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True, there are indeed cases where overlapping is desired (or even needed) but still I stand with...
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It's not unusual for highly repetitive and otherwise difficult to sequence loci, such as sex or o...
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Some hints : First filter only variants with a gnomAD AF under a certain threshold to be conside...
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