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<prev • 61 results • page 1 of 3 • next >
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Any tool/database that can map SNPs to genes based on Hi-C & eQTL data, not by closest genes?
hi-c magma chromatin capture eqtl written 9 weeks ago by avoda • 0 • updated 22 days ago by Biostar ♦♦ 20
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Genotype calling from Hi-C data
hi-c genotyping written 4 weeks ago by euge.eugenio • 0
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173
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How to query a hic file for whether two regions contact
hi-c juicer written 3 months ago by colin.kern • 900 • updated 10 weeks ago by Biostar ♦♦ 20
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113
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Hi-c Phase block Viewer
10x hi-c phase block snp haploview written 5 months ago by devarora • 150
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143
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How to address location of temporary file issue when converting Homer tag directories to hi-c files?
homer juicer hi-c juicer_tools written 5 months ago by J.J. on Biostars • 0
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obtaining mean contact/interaction frequency of a given 2D genomic region (loops from from bedpe file) from a hic matrix
bedpe hi-c matrix hic R written 5 months ago by ricardo3889 • 20
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Job: Postdoctoral position, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Australia
australia hi-c job written 4.0 years ago by Gordon Smyth • 1.6k
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333
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Job: Post-doc position in 3D chromatin organization
hi-c chip-seq job super-resolution microscopy written 8 months ago by alessio.zippo • 0
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170
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how to calculate the contact frequency between promoter and enhancer
hi-c written 8 months ago by hubenxia123 • 0
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Getting Hi-C contact matrix from single cell experiment
single-cell hi-c written 11 months ago by somnath52 • 0 • updated 10 months ago by Biostar ♦♦ 20
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Error processing Hi-data using HiCUP
hi-c forum ngs hicup written 12 months ago by srhic • 0 • updated 12 months ago by WouterDeCoster ♦ 43k
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224
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Segment the genome in an unbiased way
genome hi-c sequencing written 12 months ago by ste.lu • 60
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Your favourite workflow for Hi-C data analysis (Plant Genome)
hi-c written 14 months ago by Dataminer • 2.7k • updated 13 months ago by Biostar ♦♦ 20
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Help extracting Hi-C contacts from binaries provided in Bonev et al. 2017
genome R hi-c written 14 months ago by elyk_bear • 0
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310
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What all We can do with Hi-C data
hi-c new ideas written 15 months ago by biofreek • 0
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448
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Analysis pipeline for 3e Hi-C
hi-c 3e hi-c multi-enzyme digestion written 16 months ago by ancient_learner • 630
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1
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Hi-C data alignment with star
hi-c star written 16 months ago by Dataminer • 2.7k • updated 16 months ago by Gautier Richard • 280
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Hi-C: getting intervals from "A Compendium of Chromatin Contact Maps Reveal Spatially Active Regions in the Human Genome"
hi-c intervals chromosome interaction tad written 17 months ago by Pierre Lindenbaum ♦ 128k
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658
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Paired-end flag for singleton
hi-c sequencing samtools paired-end sequencing written 18 months ago by docdot • 0 • updated 18 months ago by prasundutta87 • 360
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How to visualize Hi-C bed file format?
genome hi-c written 21 months ago by mkh • 40
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Figuring out HiC restriction enzyme
hi-c hic scaffolding written 2.2 years ago by gbdias • 80 • updated 21 months ago by joneill4x • 80
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News: Course "Epigenetics: on the top of genetics", Udine, Italy, 4-7 September 2018
hi-c news chip-seq smallrna bs-seq ngs written 22 months ago by Fabio Marroni • 2.5k
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Job: Bioinformatics Postdoc in Aging, Harvard Medical School
hi-c chip-seq job rna-seq aging written 22 months ago by dlv • 10 • updated 22 months ago by RamRS ♦ 27k
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539
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visualize Hi-C .cool file in R
hi-c written 22 months ago by ta_awwad • 260
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413
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Missing Interaction Frequencies
hi-c hic written 2.0 years ago by Dogancan • 30
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long-range technologies for genome scaffolding
10x hi-c scaffolding nanopore optical maps written 2.3 years ago by yurybukhman • 20 • updated 2.2 years ago by Damian Kao ♦ 15k
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657
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How to annotate peaks inside TADs and annotated with Gene expression?
hi-c chip-seq rna-seq written 2.3 years ago by carlosalfonsogonzalez6 • 10
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765
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HOMER Hi-C with more than one enzyme
hi-c homer written 2.4 years ago by Satyajeet Khare • 1.5k
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How to continue processing Hi-C reads
hi-c conformation chromatin chromatin capture written 2.5 years ago by Hushus • 20
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What do the columns in this Hi-C file relate to?
hi-c chromatin capture written 2.5 years ago by Hushus • 20
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