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5
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5 follow
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recent Hi-C databases
hi-c 4c 3c written 10 days ago by Bogdan • 1.1k • updated 10 days ago by jared.andrews07 ♦ 8.4k
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60
views
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ICE normalization using JuicerTools
genome hi-c cooler juicer 3c written 11 days ago by maxrhighsmith • 0 • updated 11 days ago by GenoMax ♦ 95k
0
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0
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124
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0
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How to plot scaling curves for Hi-C data?
hi-c written 11 weeks ago by Linus • 0
0
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1
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149
views
1
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How to validate existing networks with co-expression
gene hi-c enhancer rna-seq written 11 weeks ago by loic.mangnier.1 • 10 • updated 11 weeks ago by Alex Nesmelov • 170
0
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120
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Looking for a fast way to visualize the same region of many Hi-C datasets together
hi-c juicer juicebox written 3 months ago by changxu.fan • 50
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983
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HOMER Hi-C with more than one enzyme
hi-c homer written 3.0 years ago by Satyajeet Khare • 1.6k • updated 3 months ago by smurthy • 0
0
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172
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0
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How to count the paired end reads number in given regions
hi-c paired-end bam hic-pro written 4 months ago by ben.kunfang • 30
2
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1
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156
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1
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How to deal with Hi-C replicates from different patients' tissue sample?
hi-c patient replicates written 5 months ago by ben.kunfang • 30 • updated 5 months ago by Gordon Smyth • 2.1k
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186
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0
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Explaining myJuicer.sh different steps
hi-c juicer written 5 months ago by Rox • 1.3k
1
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197
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1
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Help required to understand Hi-C data and it's Usage
hi-c forum written 6 months ago by rohitsatyam102 • 220 • updated 6 months ago by Ventrilocus • 80
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239
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News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly news long-reads pacbio hi-c written 7 months ago by carlopecoraro2 • 1.9k
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249
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Any tool/database that can map SNPs to genes based on Hi-C & eQTL data, not by closest genes?
hi-c magma chromatin capture eqtl written 10 months ago by avoda • 0 • updated 8 months ago by Biostar ♦♦ 20
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136
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Genotype calling from Hi-C data
hi-c genotyping written 8 months ago by euge.eugenio • 0
2
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0
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293
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0
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How to query a hic file for whether two regions contact
hi-c juicer written 11 months ago by colin.kern • 940 • updated 10 months ago by Biostar ♦♦ 20
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204
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0
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Hi-c Phase block Viewer
10x hi-c phase block snp haploview written 12 months ago by devarora • 300
0
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300
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How to address location of temporary file issue when converting Homer tag directories to hi-c files?
homer juicer hi-c juicer_tools written 13 months ago by J.J. on Biostars • 0
0
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332
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obtaining mean contact/interaction frequency of a given 2D genomic region (loops from from bedpe file) from a hic matrix
bedpe hi-c matrix hic R written 13 months ago by ricardo3889 • 30
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Job: Postdoctoral position, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Australia
australia hi-c job written 4.6 years ago by Gordon Smyth • 2.1k
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538
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Job: Post-doc position in 3D chromatin organization
hi-c chip-seq job super-resolution microscopy written 16 months ago by alessio.zippo • 0
0
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241
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how to calculate the contact frequency between promoter and enhancer
hi-c written 16 months ago by BenHu • 0
0
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407
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0
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Getting Hi-C contact matrix from single cell experiment
single-cell hi-c written 19 months ago by somnath52 • 0 • updated 18 months ago by Biostar ♦♦ 20
0
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340
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Error processing Hi-data using HiCUP
hi-c forum ngs hicup written 20 months ago by srhic • 30 • updated 20 months ago by WouterDeCoster ♦ 45k
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309
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0
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Segment the genome in an unbiased way
genome hi-c sequencing written 20 months ago by ste.lu • 60
1
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0
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645
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0
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Your favourite workflow for Hi-C data analysis (Plant Genome)
hi-c written 22 months ago by Dataminer • 2.7k • updated 21 months ago by Biostar ♦♦ 20
0
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256
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0
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Help extracting Hi-C contacts from binaries provided in Bonev et al. 2017
genome R hi-c written 21 months ago by elyk_bear • 0
2
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0
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372
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0
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What all We can do with Hi-C data
hi-c new ideas written 22 months ago by biofreek • 0
1
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545
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0
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Analysis pipeline for 3e Hi-C
hi-c 3e hi-c multi-enzyme digestion written 24 months ago by ancient_learner • 630
5
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1
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1.0k
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1
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Hi-C data alignment with star
hi-c star written 2.0 years ago by Dataminer • 2.7k • updated 2.0 years ago by Gautier Richard • 340
3
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650
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Hi-C: getting intervals from "A Compendium of Chromatin Contact Maps Reveal Spatially Active Regions in the Human Genome"
hi-c intervals chromosome interaction tad written 2.0 years ago by Pierre Lindenbaum ♦ 133k
2
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1
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945
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1
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Paired-end flag for singleton
hi-c sequencing samtools paired-end sequencing written 2.2 years ago by docdot • 0 • updated 2.2 years ago by prasundutta87 • 390
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