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Getting Hi-C contact matrix from single cell experiment
single-cell hi-c written 4 days ago by somnath52 • 0
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Error processing Hi-data using HiCUP
hi-c forum ngs hicup written 29 days ago by srhic • 0 • updated 29 days ago by WouterDeCoster ♦ 39k
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Segment the genome in an unbiased way
genome hi-c sequencing written 6 weeks ago by ste.lu • 40
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Your favourite workflow for Hi-C data analysis (Plant Genome)
hi-c written 3 months ago by Dataminer • 2.6k • updated 7 weeks ago by Biostar ♦♦ 20
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Help extracting Hi-C contacts from binaries provided in Bonev et al. 2017
genome R hi-c written 10 weeks ago by elyk_bear • 0
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What all We can do with Hi-C data
hi-c new ideas written 3 months ago by biofreek • 0
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Analysis pipeline for 3e Hi-C
hi-c 3e hi-c multi-enzyme digestion written 4 months ago by ancient_learner • 610
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Hi-C data alignment with star
hi-c star written 5 months ago by Dataminer • 2.6k • updated 5 months ago by Gautier Richard • 280
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Hi-C: getting intervals from "A Compendium of Chromatin Contact Maps Reveal Spatially Active Regions in the Human Genome"
hi-c intervals chromosome interaction tad written 5 months ago by Pierre Lindenbaum ♦ 121k
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Paired-end flag for singleton
hi-c sequencing samtools paired-end sequencing written 7 months ago by docdot • 0 • updated 7 months ago by prasundutta87 • 330
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How to visualize Hi-C bed file format?
genome hi-c written 10 months ago by mkh • 40
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Figuring out HiC restriction enzyme
hi-c hic scaffolding written 14 months ago by gbdias • 80 • updated 10 months ago by joneill4x • 40
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News: Course "Epigenetics: on the top of genetics", Udine, Italy, 4-7 September 2018
hi-c news chip-seq smallrna bs-seq ngs written 10 months ago by Fabio Marroni • 2.2k
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Job: Bioinformatics Postdoc in Aging, Harvard Medical School
hi-c chip-seq job rna-seq aging written 10 months ago by dlv • 10 • updated 10 months ago by RamRS ♦ 22k
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visualize Hi-C .cool file in R
hi-c written 11 months ago by ta_awwad • 210
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Missing Interaction Frequencies
hi-c hic written 12 months ago by Dogancan • 30
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long-range technologies for genome scaffolding
10x hi-c scaffolding nanopore optical maps written 16 months ago by yurybukhman • 20 • updated 14 months ago by Damian Kao ♦ 15k
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How to annotate peaks inside TADs and annotated with Gene expression?
hi-c chip-seq rna-seq written 15 months ago by carlosalfonsogonzalez6 • 10
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HOMER Hi-C with more than one enzyme
hi-c homer written 17 months ago by Satyajeet Khare • 1.4k
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How to continue processing Hi-C reads
hi-c conformation chromatin chromatin capture written 18 months ago by Hushus • 20
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What do the columns in this Hi-C file relate to?
hi-c chromatin capture written 19 months ago by Hushus • 20
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Job: Postdoctoral Researcher Systems Biology/Personalized Medicine, Perth, Australia
wgs hi-c job bioinformatics written 19 months ago by Philipp Bayer ♦ 6.2k
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Hi-C, inferring contacts from normalized matrixes
hi-c chromatine written 20 months ago by R.Blues • 80
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Hi-C, compartments, issue with some chromosomes
hi-c compartments written 20 months ago by int11ap1 • 350
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How to understand this kind of heatmap
hi-c written 21 months ago by Proxy Agent • 0 • updated 21 months ago by WouterDeCoster ♦ 39k
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Metrics for comparing Hi-C and ATAC-seq
hi-c peaks metrics atac-seq written 21 months ago by iMorbit • 10
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Job: Fully funded PhD scholarship in bioinformatics, Joint PhD Programme in Molecular Biology (JUMBO), Italy
hi-c eqtl job rna-seq atac-seq written 24 months ago by Fabio Marroni • 2.2k • updated 24 months ago by Giovanni M Dall'Olio ♦ 26k
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Chip-seq data and Hi C data
hi-c chip-seq written 2.1 years ago by tarek.mohamed • 250 • updated 2.1 years ago by igor ♦ 7.7k
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Do specialized Hi-C databases exist?
hi-c database written 3.8 years ago by svet.sidorov • 50 • updated 2.2 years ago by encoder • 0
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How to check whether two genomic regions contact in 3D?
3d hi-c 4c chip-seq 3c written 4.3 years ago by trulala • 20 • updated 2.2 years ago by encoder • 0
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