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Find interaction regions from HiC contact matrix?
gene R 4c hic chromosome_interaction written 12 days ago by star • 240
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1
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95
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1
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HELP bait coordinates do not intersect with restriction map for CHiCAGO .baitmap file
hic baitmap chicago rmap arima written 5 weeks ago by siberta • 0
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85
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how to caculate insulation score in .hic file?
next-gen hic written 6 weeks ago by liulinli17m • 0
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1
answer
113
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1
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how to remove bedpe deplication
chip-seq hic written 9 weeks ago by liulinli17m • 0 • updated 9 weeks ago by ATpoint ♦ 36k
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107
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after hicup2fitihic how to use Fit-Hic?
hic written 9 weeks ago by liulinli17m • 0
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76
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HiC - Fixation kinetics
hic chromosome confirmation capture written 12 weeks ago by christian.vahlensieck • 0
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1
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84
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1
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Falcon-Phase second round for scaffolding
hic scaffolding falcon written 4 months ago by Juke34 • 4.4k
3
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1
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122
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1
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Restriction map and bait map - Hi-C
chicago baitmap chicagotools hicup hic written 4 months ago by Kevin Blighe ♦ 61k
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1
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180
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1
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Question about interpreting PCA values in HiC data
compartments pca hic written 5 months ago by srhic • 0
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125
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Finding over and under-represented interactions using HOMER
homer hic written 5 months ago by pixie@bioinfo • 1.4k
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196
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obtaining mean contact/interaction frequency of a given 2D genomic region (loops from from bedpe file) from a hic matrix
bedpe hi-c matrix hic R written 6 months ago by ricardo3889 • 20
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255
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HOMER HiC interactions
homer hic written 8 months ago by srhic • 0
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404
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.hic to .cool
R hic written 9 months ago by c.chakraborty • 160 • updated 9 months ago by zx8754 ♦ 9.3k
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332
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1D ChIP-seq dimension from HiChip data
chip-seq chia-pet hichip hicpro hic written 10 months ago by ra2967 • 20
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410
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Problems in HiC pro installation/Finding libraries in Python
python hicpro hic libraries written 12 months ago by ra2967 • 20
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465
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1
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Why ATAC-seq/CUT&RUN need paired-end sequencing?
hic sequencing written 12 months ago by liyc.stjude • 0 • updated 12 months ago by ATpoint ♦ 36k
1
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570
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How to interpret fast or multiQC reports of easy HiC or HiC data
easyhic hic fastqc written 14 months ago by msimmer92 • 250
2
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2
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900
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2
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Can I use two restriction enzymes to analyze HiC data using HiCExplorer
hicexplorer arima hic multiple enzyme hic hic written 15 months ago by Yogendra Bordiya • 0
1
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710
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Homer not finding any genomes?
homer chip-seq hic written 15 months ago by fr • 130
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1.1k
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Visualize BEDPE file
bed hic igv written 17 months ago by ste.lu • 60
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436
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Comparing HiC results
hiccups 3-c chromatin hic written 19 months ago by Nikleotide • 110
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1
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542
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1
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How to visualise/explore Hi-C maps per chromosome at 100Kb and 40Kb
hic written 20 months ago by ZheFrench • 300 • updated 20 months ago by Alex Reynolds ♦ 30k
8
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3
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612
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3
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What is the best and latest package/software for post-processing of Hi-C (Chromosome Conformation Capture)?
gene R next-gen hic gwas written 2.2 years ago by jamespower • 50 • updated 20 months ago by afli • 190
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508
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5 follow
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How do I replace the values in one file with the values in another file?
hic written 20 months ago by giegie • 0 • updated 20 months ago by JC ♦ 10k
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730
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Some Question About Hi-C data Analysis
next-gen juicer hic written 20 months ago by Ashley • 60
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763
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Algorithms for HiC/HiChIP analysis
3d genome hichip hic written 21 months ago by rahman.samir33 • 0
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1
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1.5k
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1
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Figuring out HiC restriction enzyme
hi-c hic scaffolding written 2.3 years ago by gbdias • 80 • updated 22 months ago by joneill4x • 80
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433
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Missing Interaction Frequencies
hi-c hic written 2.1 years ago by Dogancan • 30
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1
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1.4k
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1
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Create a BED restriction digest file in HiC-Pro
hic chromosome conformation capture hic pro written 2.4 years ago by rahman.samir33 • 0 • updated 2.3 years ago by Francis • 10
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883
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Converting .hic file into edge list
hic written 2.3 years ago by neeteshp • 0
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