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written 3 months ago by
Scott McKay • 20
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3 months ago by
Kevin Blighe ♦ 53k
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written 3 months ago by
Scott McKay • 20
• updated
3 months ago by
Ben_Ensembl • 1.1k
Recent Votes
- What is the "state of the art" in gene set analysis in 2019?
- What is the "state of the art" in gene set analysis in 2019?
- A: Number Of Reads Over A Given Window And Over Given Regions Bam Files
- C: protein databases with GI numbers
- C: BLAST Database error: Error pre-fetching sequence data
- C: limma voom problem
- A: limma voom problem
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Recent Replies
-
C: protein databases with GI numbers by
genomax ♦ 76k
If you must get `gi` then you could try to retrieve them using [Entrezdirect][1]. Here is an exam...
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C: PLINK --allow-extra-chr error by
chrchang523 ♦ 6.3k
Ok, it's erroring out because the chromosome code isn't in your dataset. This is a bug, "--extra...
-
C: How to analyze the RNAseq paired samples with DESeq2? by
Asaf ♦ 6.7k
Did you have one replicate for each condition? Do all the participants have the same sex? If two ...
-
C: PLINK --allow-extra-chr error by
dumeir • 10
PLINK v1.90b6.14 64-bit (7 Jan 2020) Options in effect: --allow-extra-chr 0 ...
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C: PLINK --allow-extra-chr error by
dumeir • 10
Yes I've tried both of your suggestions. Those lines are in the exact same formatting, but just h...
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C: Flanking sequence retreival by
igor ♦ 9.2k
Have you considered [bedtools flank][1]? [1]: https://bedtools.readthedocs.io/en/latest/conte...
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C: N50 for de novo assembly result is too short by
Asaf ♦ 6.7k
OK, You need billions of reads in order to start getting something useful. You can only use it fo...
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C: limma voom problem by
Gordon Smyth • 1.3k
I had a closer look at your design matrix and realized that there are other issues with your use ...
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C: protein databases with GI numbers by
yp19 • 50
Yes that is true, however I'm trying to run a tool that requires gi numbers as part of the input ...
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C: BLAST Database error: Error pre-fetching sequence data by
elesbb91 • 0
Ahhhhh. I completely read that wrong. I thought you needed `-parse_seqid` for if the sequences ha...
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C: How to build hisat2 index on scaffold level genome assembly by
tulika98 • 0
The code works for another strain of yeast (S288c) that I am working with. The header of S288C: ...
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A: Is there any way to download knownCanonical set from the NCBI Refseq track as it by
jnavarr5 • 0
Hello, We are happy to let you know that the RefSeq Select dataset is now available on the devel...
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