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Molecular Function from ENSEMBL ID

R gene-function high-throughput written 15 months ago by Scott McKay • 20 • updated 15 months ago by Kevin Blighe ♦ 69k

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Microarray Probe IDs to ENSEMBL ID

gene R ensembl microarray high-throughput written 15 months ago by Scott McKay • 20 • updated 15 months ago by Ben_Ensembl • 1.6k

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Downsampling bam file to 2x coverage

high-throughput bam sequencing written 4.0 years ago by Jautis • 290

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Recent Replies

C: STAR --quantMode GeneCounts vs HTSeq-count by h.mon ♦ 32k
Just go ahead with STAR counts.
C: PSIPRED, how to install and make it work? by karla.penaguerra • 0
Hello :) may I know the commands you ended up using to run psipred??
C: How to avoid building millions of BWA indices? by Pierre Lindenbaum ♦ 132k
it's not clear to me what you mean with "and then against the genome and merge the BAM files toge...
A: How to extract genes from goana by Gordon Smyth • 2.1k
This has to be done for each GO term individually because there might be 100s or 1000s of genes a...
C: How to avoid building millions of BWA indices? by hunterhybrid999 • 0
I have the fasta reference for multiple episomes/plasmids that would be added for each experiment...
C: Analyze a gene sequence across the 1000 genomes data by GenoMax ♦ 94k
`data slicer` ([LINK][1]) from Ensembl is one tool that will allow you to do this. [1]: https...
C: How to avoid building millions of BWA indices? by hunterhybrid999 • 0
The episomes/plasmids are constantly being added into the analysis. I would like to know if ther...
C: "[E::bgzf_read] Read block operation failed" error - possible truncation/corrupt by ATpoint ♦ 44k
If these errors come up how can the file be fine?
C: Reading TCGA methylation .txt files in R by Lemon • 0
Hello Nazanin, I know this is an old post but would you be able to share the script you used to a...
C: Network plot from expression data in R using igraph by Kevin Blighe ♦ 69k
Can you view the contents of `mst.communities` just to check what could be happening? - like, dis...
C: Unable to find this E coli genome by pomodoro_sinensis • 0
Here is an example of a B subtilis file for cDNA (corresponding to the other genome that appears ...
C: Unable to find this E coli genome by pomodoro_sinensis • 0
Thanks so much!! I know there are no introns in bacteria, but still cDNA is not the collection of...

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