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Hisat2 with many files
hisat alignment written 5 months ago by Molinia0
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How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
hisat tophat alignment star rna-seq written 6 months ago by CY470 • updated 5 months ago by Biostar ♦♦ 20
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HISAT index with ERCC
ercc hisat alignment rna-seq written 7 months ago by n.lu30 • updated 7 months ago by Biostar ♦♦ 20
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Interpreting Hisat2 alignment output
hisat alignment rna-seq written 7 months ago by caranlove0 • updated 7 months ago by lakhujanivijay4.8k
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CIGAR and sequence length are inconsistent after HISAT alignment
rnaseq hisat alignment written 17 months ago by DVA530 • updated 17 months ago by Devon Ryan94k
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5 follow
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Bayesian algorithm / HISAT & STAR
hisat written 20 months ago by vincentpailler110 • updated 20 months ago by Rob3.7k
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HISAT index incomplete even with HUGE RAM
hisat index indexing written 2.1 years ago by emcc10 • updated 2.1 years ago by Devon Ryan94k
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What GTF file should I use in htseq?
htseq hisat rna-seq polyester written 2.3 years ago by statfa530 • updated 2.3 years ago by genomax80k
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Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 2.9 years ago by jamieson.pierce30 • updated 2.9 years ago by Brian Bushnell17k
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HISAT2 error running both --dta and --min and --max-intronlen
hisat rna-seq hisat2 written 2.9 years ago by GLFR0 • updated 2.9 years ago by lakhujanivijay4.8k
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junctions.bed file in hisat2
hisat splicing alignment pipeline written 3.1 years ago by badribio240 • updated 3.0 years ago by EagleEye6.6k
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15 follow
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Run mutltiple Fastq files on Hisat2
rnaseq hisat hisat2 written 3.4 years ago by V200 • updated 3.4 years ago by Jorge Amigo11k
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Local Galaxy: Need help with HISAT index builder
local galaxy hisat index builder written 3.6 years ago by thefirstrealace30 • updated 3.6 years ago by Devon Ryan94k
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Cuffquant errors after using HISAT2
hisat cufflinks cuffquant rna-seq hisat2 written 3.8 years ago by ilikebing200050 • updated 3.8 years ago by ablanchetcohen1.2k
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How to remove non-unique mapping reads with Hisat?
hisat alignment rna-seq written 4.8 years ago by Niek De Klein2.5k • updated 3.9 years ago by bimbam420
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