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4
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2
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262
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8 follow
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Create table of gene expression for multiple samples
hisat stringtie rna-seq written 6 weeks ago by microbiotaiota20 • updated 6 weeks ago by Kevin Blighe65k
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118
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1
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142
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Annotation for miRNA-seq data analysis
hisat mirna ensembl rna-seq assembly written 12 weeks ago by Arindam Ghosh300 • updated 12 weeks ago by Astrid_Ensembl330
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124
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0
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0
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1.9k
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HISAT2 "error: Encountered internal HISAT2 exception (#1)"
hisat hisat2 written 17 months ago by zhu.ge0 • updated 3 months ago by Rks30
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354
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0
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0
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324
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Hisat2 with many files
hisat alignment written 10 months ago by Molinia0
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321
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How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
hisat tophat alignment star rna-seq written 12 months ago by CY550 • updated 11 months ago by Biostar ♦♦ 20
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328
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HISAT index with ERCC
ercc hisat alignment rna-seq written 13 months ago by n.lu40 • updated 13 months ago by Biostar ♦♦ 20
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961
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1
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Interpreting Hisat2 alignment output
hisat alignment rna-seq written 13 months ago by caranlove10 • updated 13 months ago by lakhujanivijay5.2k
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3.3k
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1.3k
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1.2k
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1
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0
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1
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CIGAR and sequence length are inconsistent after HISAT alignment
rnaseq hisat alignment written 22 months ago by DVA540 • updated 22 months ago by Devon Ryan96k
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2.3k
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1
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762
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1
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416
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5 follow
1
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Bayesian algorithm / HISAT & STAR
hisat written 2.1 years ago by pablo140 • updated 2.1 years ago by Rob4.1k
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1.9k
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8
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2
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1
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3.4k
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1
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HISAT index incomplete even with HUGE RAM
hisat index indexing written 2.6 years ago by emcc10 • updated 2.6 years ago by Devon Ryan96k
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1.3k
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0
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What GTF file should I use in htseq?
htseq hisat rna-seq polyester written 2.7 years ago by statfa530 • updated 2.7 years ago by genomax89k
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3.3k
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9
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1
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1.9k
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10 follow
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Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 3.3 years ago by jamieson.pierce30 • updated 3.3 years ago by Brian Bushnell17k
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2.6k
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1
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HISAT2 error running both --dta and --min and --max-intronlen
hisat rna-seq hisat2 written 3.4 years ago by GLFR0 • updated 3.3 years ago by lakhujanivijay5.2k
9
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2.9k
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2
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junctions.bed file in hisat2
hisat splicing alignment pipeline written 3.5 years ago by badribio240 • updated 3.5 years ago by EagleEye6.7k
14
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2
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6.9k
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15 follow
2
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Run mutltiple Fastq files on Hisat2
rnaseq hisat hisat2 written 3.8 years ago by V230 • updated 3.8 years ago by Jorge Amigo12k
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