Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 154 results • page 1 of 6 • next >
0
votes
1
answer
215
views
1
answer
HiSAT2 edit distance option
rna-seq hisat2 written 9 months ago by gokberk • 60 • updated 4 days ago by ynau_kanghuadu • 0
0
votes
0
answers
286
views
0
answers
Does StringTie need strand information if HISAT2 was run with strand-specific information
stringtie hisat2 written 7 months ago by piyushjo • 220 • updated 5 days ago by humeira.tayyab • 10
6
votes
1
answer
1.5k
views
6 follow
1
answer
HISAT2 Indexing using annotation for Rattus_norvegicus
hisat2 annotation alignment ensembl index written 16 months ago by neranjan • 40 • updated 16 days ago by robin.mesnage • 0
3
votes
1
answer
101
views
1
answer
getting 0 counts using hisat2 and feature_count pipeline
count featurecounts rna-seq hisat2 written 29 days ago by bioyas • 0 • updated 29 days ago by swbarnes2 ♦ 7.4k
1
vote
1
answer
157
views
1
answer
What is MSTRG?
stringtie mstrg ballgown rna-seq hisat2 written 5 weeks ago by arabi • 0
1
vote
1
answer
109
views
1
answer
Mouse Strains in mm10/GRCm38 dbSNP 142?
mm10 hisat2 dbsnp mouse written 6 weeks ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 6 weeks ago by igor ♦ 9.6k
1
vote
1
answer
221
views
1
answer
HISAT2 Error: Encountered internal HISAT2 exception (#1)
hisat2 written 7 weeks ago by ja4123 • 0
0
votes
0
answers
97
views
0
answers
Hisat2 --sra-acc option (redirect sra file to a desired directory)
ncbi sra hisat2 written 8 weeks ago by Darill • 40
3
votes
2
answers
164
views
2
answers
Set the max coverage wanted with Hisat2 ?
mapping hisat2 written 9 weeks ago by Darill • 40
0
votes
0
answers
124
views
0
answers
RNAseq read mapping statistics from sam file
hisat2 rna-seq bash written 11 weeks ago by Bioinfonext • 200
1
vote
1
answer
180
views
1
answer
HISAT2 Error Building Index
rna-seq hisat2 written 3 months ago by adam.faranda • 80
4
votes
1
answer
253
views
1
answer
Hisat2 index mm10 download
rna-seq hisat2 written 4 months ago by Michel Edwar • 70
0
votes
0
answers
196
views
0
answers
What is the differences in index building by hisat with or without exon, splicing variant files?
lncrna rna-seq hisat2 written 4 months ago by mathavanbioinfo • 50
0
votes
0
answers
173
views
0
answers
Novel lncRNA identification and quantification RNA seq?
sequencing assembly lncrna rna-seq hisat2 written 5 months ago by mathavanbioinfo • 50
1
vote
0
answers
275
views
0
answers
HISAT2 index building
hisat2 written 5 months ago by nienke.besbrugge • 0
1
vote
2
answers
219
views
2
answers
dUTP sequencing -- different strand-ratios for different samples
dutp rna-seq hisat2 written 5 months ago by mschmid • 150 • updated 5 months ago by Charles Warden ♦ 7.6k
0
votes
0
answers
173
views
0
answers
Hisat2 index builder seems to be running indefinitly
rna-seq hisat2 written 6 months ago by caranlove • 0 • updated 6 months ago by ATpoint ♦ 29k
5
votes
0
answers
359
views
0
answers
Extracting uniquely mapped reads from bams
rna-seq hisat2 written 9 months ago by gokberk • 60 • updated 6 months ago by Biostar ♦♦ 20
0
votes
1
answer
266
views
1
answer
HISAT2/stringtie: intron impact on expression
tpm stringtie mrna expression rna-seq hisat2 written 7 months ago by Adrian Pelin • 2.3k • updated 7 months ago by kristoffer.vittingseerup • 3.0k
0
votes
0
answers
181
views
0
answers
Mapping a list of sequences to gene symbol
stringtie salmon htseqcount hisat2 written 7 months ago by catechize.2.learn • 110
1
vote
1
answer
921
views
5 follow
1
answer
hisat2 --sra-acc with paired reads producing single read output
sra-tools hisat2 written 21 months ago by avp25 • 0 • updated 7 months ago by poojasethiya • 80
0
votes
0
answers
375
views
0
answers
Identify jumbled transcripts (scrambled exons) using HISAT2, stringtie, and GFFcompare?
stringtie rna-seq gffcompare hisat2 written 10 months ago by wolfgang.rumpf • 10 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
381
views
0
answers
i want to convert .ht2 files into FASTA file
fasta gatk tool hisat2 written 9 months ago by saumya.sharma1509 • 0
0
votes
0
answers
512
views
0
answers
MarkDuplicates: Mates are missing
trimmomatic picardtools samtools rna-seq hisat2 written 9 months ago by swarajgaikwad15 • 0
2
votes
2
answers
4.9k
views
6 follow
2
answers
Could not locate a HISAT2 index to basename
rna-seq hisat2 written 2.7 years ago by oolongoni • 10 • updated 9 months ago by zhiminfdu • 0
0
votes
0
answers
930
views
0
answers
HISAT2 "error: Encountered internal HISAT2 exception (#1)"
hisat hisat2 written 10 months ago by zhu.ge • 0
2
votes
1
answer
630
views
5 follow
1
answer
Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 15 months ago by GiusiG • 0 • updated 10 months ago by zoegward • 90
0
votes
2
answers
387
views
5 follow
2
answers
Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 10 months ago by BM • 40 • updated 10 months ago by Juke-34 • 3.3k
0
votes
0
answers
692
views
0
answers
hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 11 months ago by tiancaigg • 0
1
vote
0
answers
943
views
0
answers
What dose this error of hisat2 mean? - (ERR): hisat2-align died with signal 11 (SEGV)
mapping rna-seq hisat2 written 11 months ago by taoi2 • 10 • updated 11 months ago by genomax ♦ 78k
<prev • 154 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • Australia, 13 minutes ago
  • Australia Perth, 18 minutes ago
  • MontrĂ©al, Canada, 23 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 655 users visited in the last hour