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<prev • 176 results • page 1 of 6 • next >
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Warnings in the Hisat2 alignment output files
hisat2 alignment rna-seq cutadapt written 16 days ago by newbie • 80 • updated 16 days ago by swbarnes2 ♦ 8.7k
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1
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111
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1
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Quality Control After Alignment
scrna-seq quality control rna-seq hisat2 written 29 days ago by asumani • 60
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0
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107
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Denovo assembly or Reference based assembly for identifying novel lncRNAs
stringtie hisat2 denovoassembly rna-seq lncrna written 5 weeks ago by newbie • 80
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137
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Aligning fastq files to pre-made index (mouse, grcm38_tran) in HISAT2 returns error "hisat2-align died with signal 11 (SEGV)"
alignment rna-seq hisat2 written 7 weeks ago by katrinegraversen • 0
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0
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344
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Hisat2 index builder seems to be running indefinitly
rna-seq hisat2 written 13 months ago by caranlove • 10 • updated 9 weeks ago by smg • 0
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2
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196
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2
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High rate of "Aligned concordantly >1 times:"
trimmomatic hisat2 written 10 weeks ago by j.m.fustin27 • 0
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140
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HiSat2 vs BowTie2 for mapping miRNA-seq reads
mirna-seq bowtie hisat2 written 12 weeks ago by Arindam Ghosh • 300
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1
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How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 3.8 years ago by al-ash • 140 • updated 3 months ago by Biostar ♦♦ 20
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219
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Star VS hisat2 for splicing reads
rnaseq splicing star hisat2 written 3 months ago by Buffo • 1.8k
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sh: 1: /usr/bin/hisat2_read_statistics.py: not found - Warning or Error?
hisat alignment rna-seq hisat2 written 3 months ago by marcelolaia • 10
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HISAT2 "error: Encountered internal HISAT2 exception (#1)"
hisat hisat2 written 17 months ago by zhu.ge • 0 • updated 3 months ago by Rks • 30
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0
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122
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Hisat2 Index with splice sites and exons
hisat2 rna-seq index written 3 months ago by biogrin • 0
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261
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Read counts at gene and transcript level - hisat2+Featurecounts or Stringtie?+deseq2
stringtie featurecounts deseq2 rna-seq hisat2 written 4 months ago by tianshenbio • 50
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1
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HISAT2 alignment problem
rna-seq hisat2 written 5 months ago by kwanghoon • 10 • updated 4 months ago by geneticatt • 20
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2
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5.6k
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2
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HISAT2 indexes, GRCm38 or mm10?
hisat2 rna-seq index written 2.8 years ago by Buffo • 1.8k • updated 4 months ago by iraia.munoa • 100
2
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1
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198
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1
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Alignment with multiple reference genome using HISAT2
assembly next-gen rna-seq alignment hisat2 written 4 months ago by spriyansh29 • 30
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0
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186
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Query about memory size usage of Hisat2
hisat2 rna-seq silkworm written 4 months ago by boymin2020 • 20
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1
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494
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1
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How to convert .tar file to fasta file?
fasta rna-seq hisat2 written 5 months ago by jabbari.parnian • 0
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1
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202
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1
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Infer strandedness of my single-end RNA-Seq data
strandedness rna-seq hisat2 written 5 months ago by DataFanatic • 260 • updated 5 months ago by kristoffer.vittingseerup • 3.4k
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hisat2 error: Symbol not found ... libstdc++.6.dylib
libstdc dylib tool rna-seq hisat2 written 5 months ago by axolootle • 0 • updated 5 months ago by lakhujanivijay ♦ 5.2k
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Could not locate a HISAT2 index corresponding to basename. Error: Encountered internal HISAT2 exception (#1)
assembly forum alignment rna-seq hisat2 written 5 months ago by Hannah Dixon • 0 • updated 5 months ago by ATpoint ♦ 39k
6
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1
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352
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1
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Low mapping rate with splice aware aligners (kallisto, HISAT2) but not bowtie2
bowtie2 kallisto rna-seq hisat2 written 5 months ago by a.palmer • 20
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1
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293
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Snakemake - Missing MissingInputException in line 20: Missing input files for rule stringt:
snakefile stringtie snakemake rna-seq hisat2 written 6 months ago by shivani.avera • 0 • updated 6 months ago by Asaf ♦ 8.4k
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Do I have to use index with trans information for RNA-seq alignment by Hisat2?
rna-seq hisat2 written 6 months ago by ben.kunfang • 10 • updated 6 months ago by Istvan Albert ♦♦ 85k
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All sequenced reads in piared end sequencing don't have mate pairs?
paired end sequencing hisat2 written 6 months ago by piyushjo • 530 • updated 6 months ago by h.mon ♦ 31k
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0
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207
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Difference between HISAT2 grch38 and grch38_snp indexes
variant calling exome alignment snp hisat2 written 6 months ago by ScubaChris • 10
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1
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310
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1
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HiSAT2 edit distance option
rna-seq hisat2 written 16 months ago by gokberk • 60 • updated 7 months ago by ynau_kanghuadu • 0
1
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Does StringTie need strand information if HISAT2 was run with strand-specific information
stringtie hisat2 written 14 months ago by piyushjo • 530 • updated 7 months ago by humeira.tayyab • 10
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6 follow
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HISAT2 Indexing using annotation for Rattus_norvegicus
hisat2 annotation alignment ensembl index written 23 months ago by neranjan • 40 • updated 7 months ago by robin.mesnage • 0
3
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1
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302
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getting 0 counts using hisat2 and feature_count pipeline
count featurecounts rna-seq hisat2 written 8 months ago by bioyas • 0 • updated 8 months ago by swbarnes2 ♦ 8.7k
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