Showing: hisat2reset
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HISAT2 index creation
hisat2 rna-seq splice site index written 16 hours ago by devbt1510 • updated 14 hours ago by Istvan Albert ♦♦ 74k
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Misamtch penalty in RNA-seq alignment
rna-seq hisat2 written 8 days ago by Ammu0 • updated 8 days ago by Istvan Albert ♦♦ 74k
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RNA-seq read alignment
tophat hisat2 written 18 days ago by Ammu0
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HISAT2-2.0.1 is not installed
hisat2 written 19 days ago by XBria30 • updated 19 days ago by Sej Modha2.2k
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Downloading HISAT2-2.0.1 NOT possible
hisat2 written 19 days ago by XBria30
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Forum: Stranger Things: unexpected limitations of popular tools
forum samtools errors hisat2 written 4 months ago by Istvan Albert ♦♦ 74k • updated 5 weeks ago by Charles Plessy2.3k
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How many index files will be generated from hisat2-build
hisat2 rna-seq index written 5 months ago by Xiaokang ZH20 • updated 8 weeks ago by sxm8911140
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hisat2 run gave 0% alignment
alignment rna-seq hisat2 written 3 months ago by vinayjrao70 • updated 3 months ago by Satyajeet Khare1.1k
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Mapping onto the Transcriptome, RNA-seq
transcriptome rna-seq bowtie hisat2 written 4 months ago by asyndeton1710 • updated 4 months ago by Rob2.2k
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HISAT2 rna-strandness option
rna-seq hisat2 written 4 months ago by cpak198130 • updated 4 months ago by Antonio R. Franco3.4k
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Hisat2 versus Bowtie2
bowtie2 exome-sequencing hisat2 written 18 months ago by nalpas.nicolas20 • updated 4 months ago by Biostar ♦♦ 20
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HISAT2: does the parameter -k 1 means unique mapping?
hisat2 written 4 months ago by biolab970 • updated 4 months ago by WouterDeCoster23k
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hisat2 parameters tuning to match tophat2 parameters
parameters tophat2 rna-seq hisat2 written 5 months ago by pierre.ortalo0 • updated 5 months ago by Istvan Albert ♦♦ 74k
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Strand-option in hisat2
rna-seq strand hisat2 written 5 months ago by vm.higareda0
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Could not locate a HISAT2 index to basename
rna-seq hisat2 written 5 months ago by oolongoni0 • updated 5 months ago by Vijay Lakhujani1.3k
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Mapping RNA-Seq data on genome from another species
genome hisat2 star rna-seq mapping written 6 months ago by tlorin210 • updated 6 months ago by Brian Bushnell14k
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HISAT2 error running both --dta and --min and --max-intronlen
hisat rna-seq hisat2 written 6 months ago by GLFR0 • updated 6 months ago by Vijay Lakhujani1.3k
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hisat2 extract snps haplotypes VCF.py: AssertionError
snps hisat2 written 6 months ago by christian.cortes.campos0 • updated 6 months ago by WouterDeCoster23k
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