Showing: hisat2reset
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how to extract counts from bam/merge-bam without gtf
R samtools bowtie2 rna-seq hisat2 written 8 days ago by Shahzad10 • updated 8 days ago by michael.ante2.7k
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hisat2 and RSEM pipeline
software error gtf rna-seq rsem hisat2 written 10 days ago by Shahzad10 • updated 10 days ago by EagleEye5.9k
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147
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Sorting BAM files from HISAT2 for DEXSeq
dexseq rna-seq hisat2 written 15 days ago by squando10 • updated 15 days ago by Ian5.3k
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HISAT2 SRR error
srr sra alignment rna-seq hisat2 written 22 days ago by NAVID.BAVI0 • updated 22 days ago by genomax58k
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Is HISAT2 able to output only the best alignment?
hisat2 written 9 weeks ago by RoseString0 • updated 25 days ago by prasundutta87260
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best pipeline to get gene and transcript counts
count alignment star rna-seq hisat2 written 25 days ago by lkianmehr30 • updated 25 days ago by t.blasco9530
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5 follow
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To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 4 weeks ago by swadha20 • updated 4 weeks ago by genomax58k
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Is TCGA Breast cancer data strand specific?
geneexpression tcga rna-seq strand hisat2 written 4 weeks ago by Bioinfo270 • updated 4 weeks ago by genomax58k
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Hisat2 alignment results can be ued for TEtoolkit analysis
hisat2 tetoolkit written 4 weeks ago by lkianmehr30 • updated 4 weeks ago by h.mon21k
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Ovation RNA-seq system, bionfomatic alignment and htseq-count
htseq-count rna-seq hisat2 written 5 weeks ago by nanoide10 • updated 5 weeks ago by caggtaagtat370
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236
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205
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How to deal with single transcripts assigned to multiple genes?
stringtie rna-seq hisat2 written 8 weeks ago by antoinefelden20 • updated 7 weeks ago by RamRS19k
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Proper design for DESeq2 and other RNAseq general questions
stringtie deseq2 rna-seq hisat2 written 8 weeks ago by Stef0 • updated 8 weeks ago by swbarnes24.5k
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240
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Problem mapping with STAR
tophat star hisat2 written 9 weeks ago by alvarocentron910 • updated 9 weeks ago by WouterDeCoster34k
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204
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Advantage of making HISAT2 genome index with annotation file
reference index annotations hisat2 written 9 weeks ago by piyushjo70 • updated 9 weeks ago by RamRS19k
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The comparison between HISAT2 and Tophat2
tophat2 rna-seq hisat2 written 2.7 years ago by Peng Huang50 • updated 10 weeks ago by RamRS19k
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8 follow
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hisat2-build indexing produces more than 8 output files
indexing hisat2 written 11 months ago by ddowlin70 • updated 3 months ago by gaoyufeng11090
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Hisat2 warning: skipping mate
ngs alignment hisat2 written 16 months ago by veronicaschroeder78100 • updated 3 months ago by ATpoint9.3k
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230
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Hisat2 multimapped reads
alignment rna-seq hisat2 written 3 months ago by corend70 • updated 3 months ago by Devon Ryan86k
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466
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hisat2 was not worked
dyld rna-seq hisat2 written 3 months ago by mikan03orange0
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