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2
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Hisat2 index mm10 download
rna-seq hisat2 written 16 days ago by Michel Edwar • 70
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100
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What is the differences in index building by hisat with or without exon, splicing variant files?
lncrna rna-seq hisat2 written 18 days ago by mathavanbioinfo • 30
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90
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Novel lncRNA identification and quantification RNA seq?
sequencing assembly lncrna rna-seq hisat2 written 24 days ago by mathavanbioinfo • 30
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127
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HISAT2 index building
hisat2 written 25 days ago by nienke.besbrugge • 0
1
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2
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132
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2
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dUTP sequencing -- different strand-ratios for different samples
dutp rna-seq hisat2 written 27 days ago by mschmid • 90 • updated 27 days ago by Charles Warden ♦ 7.3k
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88
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Hisat2 index builder seems to be running indefinitly
rna-seq hisat2 written 7 weeks ago by caranlove • 0 • updated 7 weeks ago by ATpoint ♦ 24k
5
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236
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0
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Extracting uniquely mapped reads from bams
rna-seq hisat2 written 4 months ago by gokberk • 60 • updated 11 weeks ago by Biostar ♦♦ 20
0
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1
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127
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1
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HISAT2/stringtie: intron impact on expression
tpm stringtie mrna expression rna-seq hisat2 written 11 weeks ago by Adrian Pelin • 2.3k • updated 11 weeks ago by kristoffer.vittingseerup • 2.4k
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114
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Mapping a list of sequences to gene symbol
stringtie salmon htseqcount hisat2 written 12 weeks ago by catechize.2.learn • 110
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120
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0
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Does StringTie need strand information if HISAT2 was run with strand-specific information
stringtie hisat2 written 12 weeks ago by piyushjo • 170
1
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1
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5 follow
1
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hisat2 --sra-acc with paired reads producing single read output
sra-tools hisat2 written 16 months ago by avp25 • 0 • updated 12 weeks ago by poojasethiya • 80
0
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0
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268
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0
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Identify jumbled transcripts (scrambled exons) using HISAT2, stringtie, and GFFcompare?
stringtie rna-seq gffcompare hisat2 written 5 months ago by wolfgang.rumpf • 10 • updated 3 months ago by Biostar ♦♦ 20
0
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142
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0
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HiSAT2 edit distance option
rna-seq hisat2 written 4 months ago by gokberk • 60
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0
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255
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i want to convert .ht2 files into FASTA file
fasta gatk tool hisat2 written 4 months ago by saumya.sharma1509 • 0
0
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0
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280
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0
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MarkDuplicates: Mates are missing
trimmomatic picardtools samtools rna-seq hisat2 written 5 months ago by swarajgaikwad15 • 0
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2
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4.2k
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6 follow
2
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Could not locate a HISAT2 index to basename
rna-seq hisat2 written 2.3 years ago by oolongoni • 10 • updated 5 months ago by zhiminfdu • 0
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498
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0
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HISAT2 "error: Encountered internal HISAT2 exception (#1)"
hisat hisat2 written 5 months ago by zhu.ge • 0
2
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1
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465
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5 follow
1
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Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 10 months ago by GiusiG • 0 • updated 6 months ago by zoegward • 70
0
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2
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285
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5 follow
2
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 6 months ago by BM • 40 • updated 6 months ago by Juke-34 • 2.7k
0
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0
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449
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0
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hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 7 months ago by tiancaigg • 0
1
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599
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What dose this error of hisat2 mean? - (ERR): hisat2-align died with signal 11 (SEGV)
mapping rna-seq hisat2 written 7 months ago by taoi2 • 10 • updated 7 months ago by genomax ♦ 72k
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199
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0
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Read counts at specific locations in SAM files
sam rna-seq hisat2 written 7 months ago by fogarty.mc • 0
2
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0
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387
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0
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need help with script for hisat2 alignment
alignment rna-seq hisat2 written 7 months ago by Antonio.Aubry • 10
5
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1
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483
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1
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Problem in indexing toplevel genome with HISAT2
genome hisat2 hisat2-build rna-seq index written 7 months ago by Batu • 170
2
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1
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483
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1
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Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not aligned.
htseq alignment rna-seq hisat2 written 7 months ago by guotingfeng • 10 • updated 7 months ago by genomax ♦ 72k
1
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435
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Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
hisat2 shell batch jobs wild cards bash written 7 months ago by RNAseqer • 110 • updated 7 months ago by RamRS ♦ 24k
3
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1
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282
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1
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Selecting methods for performing pairwise RNAseq analysis without replicates
tissues deseq2 deseq rna-seq hisat2 written 8 months ago by bioinforesearchquestions • 260 • updated 8 months ago by i.sudbery ♦ 5.9k
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435
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Hisat2 -Can it align paired readfiles, and unpaired read files leftover from trimming/QC simultaneously?
alignment paired end rna-seq hisat2 written 8 months ago by RNAseqer • 110 • updated 8 months ago by h.mon ♦ 27k
1
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323
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0
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Reference sequence for indica Rice Paired End reads assembly using HISAT2
rice assembly referance indica hisat2 written 8 months ago by sharadlko1 • 0
0
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1
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728
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1
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Hisat2 after the use of trimmomatic software: (ERR): hisat2-align exited with value 134
trimmomatic new tuxedo protocol rna-seq hisat2 written 8 months ago by swarajgaikwad15 • 0 • updated 8 months ago by ATpoint ♦ 24k
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