Showing: hisat2reset
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How to deal with single transcripts assigned to multiple genes?
stringtie rna-seq hisat2 written 4 days ago by antoinefelden20 • updated 1 day ago by RamRS17k
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Proper design for DESeq2 and other RNAseq general questions
stringtie deseq2 rna-seq hisat2 written 4 days ago by Stef0 • updated 4 days ago by swbarnes24.0k
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1
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Problem mapping with STAR
tophat star hisat2 written 11 days ago by alvarocentron910 • updated 11 days ago by WouterDeCoster32k
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Is HISAT2 able to output only the best alignment?
hisat2 written 13 days ago by RoseString0 • updated 13 days ago by RamRS17k
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Advantage of making HISAT2 genome index with annotation file
reference index annotations hisat2 written 14 days ago by piyushjo40 • updated 13 days ago by RamRS17k
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The comparison between HISAT2 and Tophat2
tophat2 rna-seq hisat2 written 2.6 years ago by Peng Huang50 • updated 19 days ago by RamRS17k
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hisat2-build indexing produces more than 8 output files
indexing hisat2 written 9 months ago by ddowlin60 • updated 6 weeks ago by gaoyufeng11090
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Hisat2 warning: skipping mate
ngs alignment hisat2 written 15 months ago by veronicaschroeder78100 • updated 8 weeks ago by ATpoint7.5k
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156
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1
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Hisat2 multimapped reads
alignment rna-seq hisat2 written 8 weeks ago by corend50 • updated 8 weeks ago by Devon Ryan84k
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343
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hisat2 was not worked
dyld rna-seq hisat2 written 9 weeks ago by mikan03orange0
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hisat2 --sra-acc with paired reads producing single read output
sra-tools hisat2 written 3 months ago by avp250 • updated 11 weeks ago by Biostar ♦♦ 20
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Adding tag XS to HISAT2 sam files perior to StringTie
stringtie alignment samtools rna-seq hisat2 written 12 weeks ago by Farbod3.1k • updated 12 weeks ago by Vijay Lakhujani3.0k
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Mapping paired-end reads to a draft genome using HISAT2
genome guided alignment rna-seq hisat2 written 3 months ago by Farbod3.1k • updated 3 months ago by genomax55k
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346
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Hisat2 index building taking days even with 40 GB RAM
sequencing build hisat2 written 5 months ago by piyushjo40 • updated 3 months ago by Biostar ♦♦ 20
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stringtie merged gtf doesn't give any gene expression columns
stringtie merge rna-seq hisat2 written 4 months ago by Biologist70 • updated 4 months ago by Kevin Blighe28k
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4
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What is the difference between HISAT2 index "genome.tran" and "genome"
hisat2 rna-seq index written 9 months ago by xchnju20 • updated 4 months ago by li.anlin6660
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Evaluation of HISAT2 Alignment Result
alignment rna-seq hisat2 written 4 months ago by modarzi20 • updated 4 months ago by Vijay Lakhujani3.0k
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277
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Why difference in Hisat2 and bamqc from qualimap results?
bamqc qualimap rna-seq hisat2 written 5 months ago by Bioinfo240 • updated 5 months ago by Biostar ♦♦ 20
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Computer requirements for RNAseq alignment
rnaseq computer alignment hisat2 written 5 months ago by n.lu30 • updated 5 months ago by genomax55k
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