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<prev • 185 results • page 1 of 7 • next >
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How to build an index for zebrafish with reference genome and snp file using hisat2?
zebrafish reference genome snp hisat2 written 5 days ago by tara • 20
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How do you create a multiple reference genome in Hisat2?
assembly next-gen rna-seq alignment hisat2 written 15 days ago by Aaron • 0
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145
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hisat2 alignment error
software error alignment rna-seq hisat2 written 18 days ago by marco • 20
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229
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RNA-Seq read alignment genomic and transcriptomic
alignment rna-seq hisat2 written 6 weeks ago by imaparna27 • 0
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165
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How to get transcript ID and tpm from the gtf files of ballgown outputs?
gtf ballgown hisat2 rna-seq awk written 6 weeks ago by newbie • 90 • updated 6 weeks ago by _r_am ♦ 32k
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HISAT2 error: Use of uninitialized value $l
perl hisat2 written 7 weeks ago by sanchezgil.juanjose • 0
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HiSat2 vs BowTie2 for mapping miRNA-seq reads
mirna-seq bowtie hisat2 written 6 months ago by Arindam Ghosh • 340 • updated 8 weeks ago by Biostar ♦♦ 20
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HISAT2: Question regarding providing file path to indexed genome folder
rna-seq hisat2 written 12 weeks ago by venura • 60 • updated 12 weeks ago by ATpoint ♦ 44k
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Strandness setting for HISAT2 : BGI sequencing platform
rna-seq hisat2 written 3 months ago by venura • 60 • updated 3 months ago by GenoMax ♦ 94k
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hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 22 months ago by tiancaigg • 10 • updated 3 months ago by 20482485 • 0
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HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
ballgown hisat2 stringtie isoform rna-seq written 3 months ago by ra711 • 0 • updated 3 months ago by GenoMax ♦ 94k
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Warnings in the Hisat2 alignment output files
hisat2 alignment rna-seq cutadapt written 4 months ago by newbie • 90 • updated 4 months ago by swbarnes2 ♦ 9.4k
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Quality Control After Alignment
scrna-seq quality control rna-seq hisat2 written 4 months ago by asumani • 70
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Denovo assembly or Reference based assembly for identifying novel lncRNAs
stringtie hisat2 denovoassembly rna-seq lncrna written 4 months ago by newbie • 90
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Aligning fastq files to pre-made index (mouse, grcm38_tran) in HISAT2 returns error "hisat2-align died with signal 11 (SEGV)"
alignment rna-seq hisat2 written 5 months ago by katrinegraversen • 0
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Hisat2 index builder seems to be running indefinitly
rna-seq hisat2 written 17 months ago by caranlove • 10 • updated 5 months ago by smg • 0
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High rate of "Aligned concordantly >1 times:"
trimmomatic hisat2 written 6 months ago by j.m.fustin27 • 0
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How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 4.1 years ago by al-ash • 150 • updated 6 months ago by Biostar ♦♦ 20
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Star VS hisat2 for splicing reads
rnaseq splicing star hisat2 written 7 months ago by Buffo • 1.8k
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sh: 1: /usr/bin/hisat2_read_statistics.py: not found - Warning or Error?
hisat alignment rna-seq hisat2 written 7 months ago by marcelolaia • 10
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HISAT2 "error: Encountered internal HISAT2 exception (#1)"
hisat hisat2 written 21 months ago by zhu.ge • 0 • updated 7 months ago by Rks • 30
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Hisat2 Index with splice sites and exons
hisat2 rna-seq index written 7 months ago by biogrin • 0
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Read counts at gene and transcript level - hisat2+Featurecounts or Stringtie?+deseq2
stringtie featurecounts deseq2 rna-seq hisat2 written 7 months ago by tianshenbio • 70
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HISAT2 alignment problem
rna-seq hisat2 written 8 months ago by kwanghoon • 20 • updated 8 months ago by geneticatt • 40
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HISAT2 indexes, GRCm38 or mm10?
hisat2 rna-seq index written 3.2 years ago by Buffo • 1.8k • updated 8 months ago by iraia.munoa • 100
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Alignment with multiple reference genome using HISAT2
assembly next-gen rna-seq alignment hisat2 written 8 months ago by spriyansh29 • 30
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Query about memory size usage of Hisat2
hisat2 rna-seq silkworm written 8 months ago by boymin2020 • 20
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How to convert .tar file to fasta file?
fasta rna-seq hisat2 written 8 months ago by jabbari.parnian • 0
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Infer strandedness of my single-end RNA-Seq data
strandedness rna-seq hisat2 written 8 months ago by DataFanatic • 300 • updated 8 months ago by kristoffer.vittingseerup • 3.5k
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hisat2 error: Symbol not found ... libstdc++.6.dylib
libstdc dylib tool rna-seq hisat2 written 8 months ago by axolootle • 0 • updated 8 months ago by lakhujanivijay ♦ 5.3k
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