Showing: hisat2reset
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hisat2 --sra-acc with paired reads producing single read output
sra-tools hisat2 written 7 weeks ago by avp250 • updated 16 days ago by Biostar ♦♦ 20
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Adding tag XS to HISAT2 sam files perior to StringTie
stringtie alignment samtools rna-seq hisat2 written 20 days ago by Farbod3.1k • updated 20 days ago by Vijay Lakhujani2.8k
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Mapping paired-end reads to a draft genome using HISAT2
genome guided alignment rna-seq hisat2 written 25 days ago by Farbod3.1k • updated 25 days ago by genomax51k
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Hisat2 index building taking days even with 40 GB RAM
sequencing build hisat2 written 11 weeks ago by piyushjo0 • updated 4 weeks ago by Biostar ♦♦ 20
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stringtie merged gtf doesn't give any gene expression columns
stringtie merge rna-seq hisat2 written 8 weeks ago by Biologist60 • updated 8 weeks ago by Kevin Blighe24k
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What is the difference between HISAT2 index "genome.tran" and "genome"
hisat2 rna-seq index written 6 months ago by xchnju20 • updated 10 weeks ago by li.anlin6660
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Evaluation of HISAT2 Alignment Result
alignment rna-seq hisat2 written 10 weeks ago by modarzi20 • updated 10 weeks ago by Vijay Lakhujani2.8k
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Why difference in Hisat2 and bamqc from qualimap results?
bamqc qualimap rna-seq hisat2 written 3 months ago by Bioinfo220 • updated 3 months ago by Biostar ♦♦ 20
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Computer requirements for RNAseq alignment
rnaseq computer alignment hisat2 written 3 months ago by n.lu30 • updated 3 months ago by genomax51k
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Alignment and Counting strandedness redundancy?
alignment featurecounts rna-seq strand hisat2 written 3 months ago by brismiller10 • updated 3 months ago by h.mon16k
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Low read mapping efficiency with HISAT2
rna-seq hisat2 written 4 months ago by givans0 • updated 4 months ago by h.mon16k
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Creating Hisat2 Index
genome hisat2 rna-seq index written 5 months ago by Bioinfo220
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Which strand specific option need to be used with HISAT2?
hisat2 rna-seq strandspecific written 5 months ago by Bioinfo220 • updated 5 months ago by JJ320
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Cufflinks gives only CUFF names with a gtf.
cufflinks rna-seq hisat2 written 5 months ago by hkarakurt20 • updated 5 months ago by Macspider2.4k
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HISAT2 running pair end
rna-seq hisat2 written 6 months ago by catagui20
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Hisat2 multiple paired end reads
allignment rna-seq hisat2 written 6 months ago by sicat.paolo2020 • updated 6 months ago by Vijay Lakhujani2.8k
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