Showing: hisat2reset
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Creating Hisat2 Index
genome hisat2 rna-seq index written 15 days ago by Bioinfo130
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Which strand specific option need to be used with HISAT2?
hisat2 rna-seq strandspecific written 16 days ago by Bioinfo130 • updated 16 days ago by JJ170
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Cufflinks gives only CUFF names with a gtf.
cufflinks rna-seq hisat2 written 28 days ago by hkarakurt10 • updated 28 days ago by Macspider2.2k
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HISAT2 running pair end
rna-seq hisat2 written 5 weeks ago by catagui20
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Hisat2 multiple paired end reads
allignment rna-seq hisat2 written 6 weeks ago by sicat.paolo200 • updated 5 weeks ago by Vijay Lakhujani1.7k
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What is the difference between HISAT2 index "genome.tran" and "genome"
hisat2 rna-seq index written 9 weeks ago by xchnju10 • updated 9 weeks ago by WouterDeCoster26k
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Alignment parameters within Hisat2
alignment rna-seq hisat2 written 3 months ago by amy1610 • updated 11 weeks ago by Biostar ♦♦ 20
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HISAT2 indexes, GRCm38 or mm10?
hisat2 rna-seq index written 12 weeks ago by Buffo650 • updated 12 weeks ago by Sej Modha2.6k
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HISAT2 index creation
hisat2 rna-seq splice site index written 3 months ago by devbt1510
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Misamtch penalty in RNA-seq alignment
rna-seq hisat2 written 3 months ago by amy1610 • updated 3 months ago by Istvan Albert ♦♦ 75k
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RNA-seq read alignment
tophat hisat2 written 3 months ago by amy1610
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HISAT2-2.0.1 is not installed
hisat2 written 3 months ago by XBria30 • updated 3 months ago by Sej Modha2.6k
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Downloading HISAT2-2.0.1 NOT possible
hisat2 written 3 months ago by XBria30
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Forum: Stranger Things: unexpected limitations of popular tools
forum samtools errors hisat2 written 7 months ago by Istvan Albert ♦♦ 75k • updated 4 months ago by Charles Plessy2.4k
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How many index files will be generated from hisat2-build
hisat2 rna-seq index written 8 months ago by Xiaokang ZH20 • updated 5 months ago by sxm8911140
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hisat2 run gave 0% alignment
alignment rna-seq hisat2 written 6 months ago by vinayjrao80 • updated 6 months ago by Satyajeet Khare1.2k
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