Showing: hisat2reset
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66
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9
answers
4.6k
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30 follow
9
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Forum: Stranger Things: unexpected limitations of popular tools
forum samtools errors hisat2 written 2.3 years ago by Istvan Albert ♦♦ 81k • updated 2.1 years ago by Charles Plessy2.7k
0
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3
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3.9k
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3
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Mapping onto the Transcriptome, RNA-seq
transcriptome rna-seq bowtie hisat2 written 2.3 years ago by asyndeton1720 • updated 2.3 years ago by Rob3.6k
6
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2
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5.8k
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2
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0
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2
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1.6k
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2
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3
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2
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2.7k
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2
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How to resync paired-end data?
de novo bowtie2 paired-end transcriptome hisat2 written 3.1 years ago by germelcar20 • updated 3.1 years ago by Charles Plessy2.7k
13
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2
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5.6k
views
15 follow
2
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Run mutltiple Fastq files on Hisat2
rnaseq hisat hisat2 written 3.0 years ago by V170 • updated 3.0 years ago by Jorge Amigo11k
5
votes
2
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5.8k
views
2
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How to build Hisat2 index for human genome (GRCh37 )?
rna-seq hisat2 written 2.5 years ago by Vasu410 • updated 2.5 years ago by h.mon28k
6
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2
answers
2.0k
views
5 follow
2
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Mapping RNA-Seq data on genome from another species
genome hisat2 star rna-seq mapping written 2.5 years ago by tlorin250 • updated 2.5 years ago by Brian Bushnell16k
8
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2
answers
2.7k
views
7 follow
2
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2
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2
answers
4.4k
views
6 follow
2
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Could not locate a HISAT2 index to basename
rna-seq hisat2 written 2.4 years ago by oolongoni10 • updated 6 months ago by zhiminfdu0
9
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2
answers
4.8k
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7 follow
2
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HISAT2 rna-strandness option
rna-seq hisat2 written 2.3 years ago by cpak1981100 • updated 2.3 years ago by Antonio R. Franco4.2k
25
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2
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2.1k
views
10 follow
2
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6
votes
2
answers
1.3k
views
2
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RNA-seq read alignment
tophat hisat2 written 2.0 years ago by amy1640
5
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2
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1.4k
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2
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HISAT2 index creation
hisat2 rna-seq splice site index written 24 months ago by devbt1510
5
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2
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1.4k
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2
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Hisat2 multiple paired end reads
allignment rna-seq hisat2 written 22 months ago by sicat.paolo2030 • updated 22 months ago by lakhujanivijay4.5k
15
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2
answers
3.0k
views
8 follow
2
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Which strand specific option need to be used with HISAT2?
hisat2 rna-seq strandspecific written 21 months ago by Vasu410 • updated 21 months ago by JJ470
2
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2
answers
975
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2
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1
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2
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2.6k
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2
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Computer requirements for RNAseq alignment
rnaseq computer alignment hisat2 written 19 months ago by n.lu30 • updated 19 months ago by genomax74k
10
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2
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2.6k
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8 follow
2
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Evaluation of HISAT2 Alignment Result
alignment rna-seq hisat2 written 18 months ago by modarzi90 • updated 18 months ago by lakhujanivijay4.5k
2
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2
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490
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5 follow
2
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Proper design for DESeq2 and other RNAseq general questions
stringtie deseq2 rna-seq hisat2 written 13 months ago by Stef0 • updated 13 months ago by swbarnes26.9k
3
votes
2
answers
581
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2
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how to extract counts from bam/merge-bam without gtf
R samtools bowtie2 rna-seq hisat2 written 12 months ago by Shahzad10 • updated 12 months ago by michael.ante3.5k
4
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2
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593
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2
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0
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2
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314
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5 follow
2
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 7 months ago by BM40 • updated 7 months ago by Juke-342.9k
1
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2
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155
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2
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dUTP sequencing -- different strand-ratios for different samples
dutp rna-seq hisat2 written 8 weeks ago by mschmid110 • updated 8 weeks ago by Charles Warden7.3k
1
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1
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2.0k
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1
answer
3
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1
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2.0k
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1
answer
3
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1
answer
1.8k
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1
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Cuffquant errors after using HISAT2
hisat cufflinks cuffquant rna-seq hisat2 written 3.4 years ago by ilikebing200050 • updated 3.4 years ago by ablanchetcohen1.2k
1
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1
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1.4k
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1
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how to set reporting options for RNA-seq reads alignment with hisat2?
rna-seq hisat2 written 3.3 years ago by epigene470 • updated 3.3 years ago by WouterDeCoster42k
1
vote
1
answer
718
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1
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Drosophila differential expression.
drosophila cufflinks cuffdiff rna-seq hisat2 written 3.2 years ago by vm.higareda20 • updated 3.2 years ago by Satyajeet Khare1.5k
1
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1
answer
4.0k
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1
answer
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