Showing: hisat2reset
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 21 days ago by BM40 • updated 21 days ago by Juke-342.1k
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Strange output of samtools flag stat?
mouse samtools rna-seq hisat2 written 3 months ago by heking0 • updated 3 months ago by Istvan Albert ♦♦ 80k
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Hisat2 output for stringtie
stringtie hisat2 written 5 months ago by Sam100 • updated 5 months ago by Vijay Lakhujani4.0k
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how to extract counts from bam/merge-bam without gtf
R samtools bowtie2 rna-seq hisat2 written 5 months ago by Shahzad10 • updated 5 months ago by michael.ante3.2k
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hisat2 and RSEM pipeline
software error gtf rna-seq rsem hisat2 written 5 months ago by Shahzad10 • updated 5 months ago by EagleEye6.2k
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Sorting BAM files from HISAT2 for DEXSeq
dexseq rna-seq hisat2 written 5 months ago by squando10 • updated 5 months ago by Ian5.4k
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HISAT2 SRR error
srr sra alignment rna-seq hisat2 written 6 months ago by NAVID.BAVI0 • updated 6 months ago by genomax65k
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best pipeline to get gene and transcript counts
count alignment star rna-seq hisat2 written 6 months ago by lkianmehr30 • updated 6 months ago by t.blasco9530
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To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 6 months ago by swadha20 • updated 6 months ago by genomax65k
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