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268

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hmmsearch error: Failed to open sequence file

hmmer hmmsearch pfam written 3 months ago by zoepklein • 0

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582

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hmmsearch vs hmmscan - e-value, speed, & output differences?

protein hmmer e-value hmmscan hmmsearch written 9 months ago by jabaron.phd • 0

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1.6k

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hmmsearch to show all sequences

multifasta hmmsearch hmmer written 4.7 years ago by srx3001 • 10 • updated 24 months ago by jscience • 0

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818

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envelope and alignment coordinates in hmmsearch result

sequence bioinformatics alignment hmmsearch hmmer written 2.2 years ago by sanjeet00001992 • 0

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1.3k

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hmmsearch didn't work with nucleotide genome

genome nucleotide genome hmmer hmmsearch tool written 3.0 years ago by lbroetto • 0 • updated 3.0 years ago by Alex Reynolds ♦ 31k

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749

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Exact match with query architecture option for local version of HMMER

hmmsearch hmmer written 3.1 years ago by Sej Modha ♦ 4.8k

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3.0k

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Installation issues with hmmer2

hmmer2 hmmsearch prokka hmmer written 6.4 years ago by JV • 410 • updated 4.3 years ago by Ram ♦ 32k

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1.2k

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Problem with SMART

smart hmm hmmsearch error written 4.9 years ago by alejocn5 • 0

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1.8k

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Parsing Hmmsearch tblout format

hmmsearch written 5.6 years ago by aproposdiver • 10

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2.7k

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hmmer core dumps, does not create proper MSA Stockholm format files

phmmer hmmsearch hmmer written 5.8 years ago by kdiaz17 • 0 • updated 5.8 years ago by seanrobertseddy • 50

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1.7k

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biopython SearchIO with hmmearch 2 error

python hmmer hmmsearch biopython written 6.0 years ago by MAK • 10 • updated 6.0 years ago by Biostar ♦♦ 20

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Recent Replies

C: LncTar error !!! by kuntalasb • 10
I did actually. But then it takes a lot of time without giving any result. The server gets timed ...
C: segfault in ADMIXTURE by 4galaxy77 • 280
segfaults are mostly caused by not having enough memory available.
C: question regarding QC of scRNA-seq data by rpolicastro ♦ 3.9k
1. Most people just ignore anything that isn't poly-adenylated. It's also common in certain anal...
C: Forward and reverse single cell data analysis by EagleEye ♦ 6.8k
That's great. Good to know and thanks for the tip.
C: How to match data from file 2 on 1st with deleting unmatched data by JC ♦ 12k
can you share an example of the second file?
C: counting after aligning miRNA reads to miRBase mature miRNA instead of reference by kanika.151 • 100
I got the answer at this link: https://www.biostars.org/p/383857/
C: Is there any method to convert a text file to VCF format? by desouzareis.r • 10
There is another thread that may help [Converting Microarray SNP data into VCF format][1] [1]...
C: Filter contigs by size: Different output between quast report and python output by Joe ♦ 18k
The code in the first post has incorrect indentation levels for python. You should not copy it ve...
C: Duplicate SNP IDs in TOPMed Imputation output for gwas data by yy237 • 30
Thank you very much Kevin!
C: Forward and reverse single cell data analysis by ATpoint ♦ 45k
No, `zcat` would decompress the stream which is unintended. `cat` is well able to concatenate two...
C: Pyranges: operate on just metadata columns by samuelbrycesmith • 30
No worries. Thanks for the share on the solution (and to Endre), that's a really clean approach f...
A: Web-based tool for 3D visualization of proteins given a .pbd file by giusdalt95 • 0
Thank you! I just want to visualize 2 pdb files, but I don't usually work on proteins, so I don'...

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