Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 138 results • page 1 of 5 • next >
0
votes
2
answers
457
views
2
answers
Question about HOMER peak annotation to some features. Customize gff3?
homer chip-seq annotation written 18 months ago by nanoide • 60
2
votes
1
answer
3.3k
views
1
answer
HOMER mergePeaks totals don't add up to peaks input
homer written 4.7 years ago by steve • 2.7k • updated 14 days ago by Biostar ♦♦ 20
1
vote
2
answers
2.0k
views
2
answers
ERRBS Methylation data analysis
homer errbs next-gen methylation bisulfite written 5.3 years ago by madkitty • 620 • updated 5 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
149
views
0
answers
Extracting background utilized by Homer for motif finding
homer chip-seq written 5 weeks ago by gkunz • 10
0
votes
1
answer
290
views
1
answer
HOMER annotatePeaks.pl with GFF. How to specify a feature?
homer gff chip-seq peakcalling annotation written 11 months ago by callapus • 0 • updated 7 weeks ago by Qiongyi • 100
0
votes
0
answers
130
views
0
answers
HOMER html output compared with homerMotifs.all.motifs are different
homer motif written 8 weeks ago by testtube • 10
0
votes
0
answers
193
views
0
answers
findPeaks in homer
homer findpeaks chip-seq written 9 weeks ago by mohamadrezakeshtkar • 0 • updated 9 weeks ago by _r_am ♦ 32k
13
votes
1
answer
5.9k
views
8 follow
1
answer
HOMER annotatePeaks.pl problem
homer chip-seq rna-seq written 3.3 years ago by Seq225 • 90 • updated 3 months ago by jimmy0958073736 • 0
0
votes
0
answers
143
views
0
answers
findMotif p-value dependency
homer motif written 3 months ago by floriandeckert • 0
0
votes
0
answers
346
views
0
answers
HOMER: ./findMotifsGenome.pl
homer chip-seq written 4 months ago by radicav06 • 0 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
983
views
0
answers
HOMER Hi-C with more than one enzyme
hi-c homer written 3.0 years ago by Satyajeet Khare • 1.6k • updated 3 months ago by smurthy • 0
1
vote
0
answers
1.8k
views
0
answers
problem with HOMER findMotifsGenome.pl
homer atac-seq written 2.3 years ago by ste.lu • 60 • updated 4 months ago by radicav06 • 0
1
vote
1
answer
1.1k
views
1
answer
Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 2.8 years ago by endrebak • 840 • updated 4 months ago by jared.andrews07 ♦ 8.4k
0
votes
1
answer
214
views
1
answer
Homer: removeOutOfBoundsReads.pl command cannot find chromosome size file
homer next-gen atac seq rna-seq written 5 months ago by rb56 • 0
0
votes
1
answer
382
views
1
answer
annotationPeaks.pl algorithm for defining promoter-Tss
homer annotationpeaks.pl promoter-tss tss written 6 months ago by yahelsal • 0
0
votes
0
answers
253
views
0
answers
Extend ChIP-seq peaks to known Restriction Enzyme Digest Sites?
peak calling macs2 chip-seq homer written 6 months ago by science_lizard • 0
1
vote
1
answer
257
views
1
answer
Is it acceptable to use different FDR cutoffs for peak calling in different ChIP-seq experiments (with same antibody)?
fdr peak calling chip-seq homer statistics written 6 months ago by science_lizard • 0 • updated 6 months ago by benformatics • 2.0k
0
votes
0
answers
214
views
0
answers
eCLIP-seq peak calling using HOMER
clip-seq homer algorithm rna-seq peak written 6 months ago by dahun73 • 10
0
votes
0
answers
256
views
0
answers
how to set a appropriate background file when using HOMER findMotifGenome.pl
homer motif written 6 months ago by guandongshang • 0
3
votes
0
answers
318
views
0
answers
Every time the results of findMotifGenome.pl in HOMER is different
homer motif written 6 months ago by guandongshang • 0
0
votes
0
answers
248
views
0
answers
HOMER load genomes not working
genome homer rna pombe bioinformatics written 6 months ago by c78483 • 0 • updated 6 months ago by GenoMax ♦ 95k
0
votes
0
answers
345
views
0
answers
HOMER hg19 not found in config.txt
homer finding motif written 7 months ago by jeni • 30
1
vote
1
answer
424
views
1
answer
conda install homer
homer conda written 7 months ago by amitpande74 • 10
0
votes
0
answers
968
views
0
answers
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
homer motif analysis written 3.1 years ago by JMallory • 0 • updated 8 months ago by Biostar ♦♦ 20
3
votes
0
answers
298
views
5 follow
0
answers
HOMER error -bash: ./ctcf.motif: Permission denied
software error homer chip-seq sequencing written 9 months ago by gerardo_za_94 • 10
0
votes
0
answers
227
views
0
answers
Can't find documentation about output of homer2 find command
homer motif enrichment written 10 months ago by colin.kern • 940
0
votes
0
answers
250
views
0
answers
Homer analysis result on -region output format error
homer chip-seq written 10 months ago by Jamie_Francesco • 0
0
votes
0
answers
331
views
0
answers
How to get Motif positions by peak (not by Chromosome) using Homer annotatePeaks.pl ??
homer annotatepeaks peakid positions motif written 10 months ago by carina2817 • 20
1
vote
1
answer
447
views
1
answer
Classify gene ontology (GO) enrichment terms
homer gene ontology classification chip-seq written 12 months ago by yepeh72919 • 10 • updated 12 months ago by tamerg • 80
0
votes
0
answers
227
views
0
answers
Finding over and under-represented interactions using HOMER
homer hic written 12 months ago by pixie@bioinfo • 1.4k
<prev • 138 results • page 1 of 5 • next >
Recent Votes
Recent Locations • All »
  • pune, India, 1 minute ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2527 users visited in the last hour
_