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<prev • 118 results • page 1 of 4 • next >
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Classify gene ontology (GO) enrichment terms
homer gene ontology classification chip-seq written 5 weeks ago by yepeh72919 • 10 • updated 5 weeks ago by tamerg • 10
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72
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Finding over and under-represented interactions using HOMER
homer hic written 6 weeks ago by pixie@bioinfo • 1.4k
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116
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0
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Homer's findPeaks: normalized Tag counts, Peak Score, and RPKMs
homer chip-seq atac-seq written 6 weeks ago by fr • 130
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0
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88
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0
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homer IDR, pseudoreplicates error
homer idr faire written 7 weeks ago by boczniak767 • 680
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93
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How to address location of temporary file issue when converting Homer tag directories to hi-c files?
homer juicer hi-c juicer_tools written 7 weeks ago by J.J. on Biostars • 0
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152
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Strange output from Homer findPeaks
atacseq homer atac-seq written 11 weeks ago by fr • 130 • updated 8 weeks ago by panxingxin16 • 0
112
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9
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72 follow
9
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 4.0 years ago by Sinji • 3.0k • updated 8 weeks ago by Ömer An • 190
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93
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meaning of "Total subpeaks" in Homer's mergePeaks?
homer chip-seq atac-seq written 9 weeks ago by fr • 130
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97
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HOMER Known Motifs - Genome-wide predictions
homer motif human zoops written 10 weeks ago by Sergio • 0
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212
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How to annotate peaks without strand information
peak homer written 4 months ago by ashafik • 0 • updated 3 months ago by Biostar ♦♦ 20
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145
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HOMER HiC interactions
homer hic written 3 months ago by srhic • 0
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5 follow
2
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 16 months ago by a.rex • 190 • updated 5 months ago by danvoronov • 10
1
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273
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1
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Refseq TSS vs Ensemble TSS
homer ensemble refseq tss written 5 months ago by srhic • 0
14
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1
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3.4k
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1
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 3.8 years ago by steve • 2.4k
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1
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309
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1
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HOMER tss command not working
homer chip-seq tss written 6 months ago by carlee.bettler • 10 • updated 6 months ago by Arup Ghosh ♦ 2.1k
6
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1
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501
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5 follow
1
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How to find peaks which have specific TF motif sequence
homer motif analysis chip-seq written 6 months ago by km1986 • 0 • updated 6 months ago by ATpoint ♦ 29k
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252
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Peak annotation with HOMER. Statistics with the annStats parameter
homer annotatepeaks.pl stats chip-seq written 6 months ago by nanoide • 40
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476
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 9 months ago by mmaqueda • 0 • updated 6 months ago by Biostar ♦♦ 20
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187
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Question about HOMER peak annotation to some features. Customize gff3?
homer chip-seq annotation written 7 months ago by nanoide • 40
3
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1
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283
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1
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homer makebigwig error
homer chip-seq written 7 months ago by yueli7 • 110 • updated 7 months ago by ATpoint ♦ 29k
3
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1
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287
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1
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Homer annotatePeaks on genomic regions
homer annotatepeaks chip-seq written 7 months ago by fr • 130 • updated 7 months ago by bruss • 30
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170
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HOMER annotatePeak -ghist --- lose of peaks?
homer annotatepeaks chip-seq histogram written 7 months ago by martinm • 0
7
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1
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444
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1
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How to bin my count data for the entire genome?
genome homer next-gen chip-seq sequencing written 8 months ago by fr • 130 • updated 8 months ago by Prakash • 1.8k
2
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1
answer
411
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1
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Can HOMER be used to predict the binding site of a transcription factor on a DNA sequence?
genome gene chip-seq rna-seq homer written 8 months ago by charlesgwellem • 0 • updated 8 months ago by Alex Reynolds ♦ 29k
1
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1
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275
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1
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 10 months ago by nanoide • 40 • updated 10 months ago by jared.andrews07 ♦ 4.8k
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439
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Discrepancy in HOMER output
motif_finding chip-seq homer written 10 months ago by doan.dinh • 0
5
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2
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489
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5 follow
2
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Getting motif instances corresponding to regions
regions homer motif analysis instances written 10 months ago by nanoide • 40 • updated 10 months ago by Alex Reynolds ♦ 29k
2
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0
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320
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0
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counting reads with HOMER and only .bed files
homer chip-seq counting reads written 10 months ago by xAZx • 0
0
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0
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444
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0
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Homer not finding any genomes?
homer chip-seq hic written 11 months ago by fr • 130
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278
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0
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HOMER findMotifsGenome.pl Local Optimisation Phase
de novo motif discovery homer chip-seq written 11 months ago by janepuh12 • 0
<prev • 118 results • page 1 of 4 • next >
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