Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: homer • reset
or   Classic search
<prev • 91 results • page 1 of 4 • next >
4
votes
1
answer
169
views
1
answer
Help with HOMER motif profile plots
homer motifs written 12 days ago by venu ♦ 5.8k
1
vote
0
answers
100
views
0
answers
Homer annotatePeaks.pl custom GTF
gtf homer atac-seq written 26 days ago by Lucy • 0
0
votes
0
answers
129
views
0
answers
Aligning RNA-seq and ATAC-seq gene annotations
homer gene annotation atac-seq rna-seq written 5 weeks ago by Lucy • 0
3
votes
0
answers
224
views
0
answers
Finding motifs with Homer for obscure species.
genome homer atac-seq written 3 months ago by a.rex • 170 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
135
views
0
answers
GRO-seq - low Same / Diff strand fold enrichment
gro-seq homer maketagdirectory written 4 months ago by l.moreno.uva • 0 • updated 7 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
194
views
0
answers
Homer: annotate peaks with ensembl annotation (.gtf) file instead of UCSC anotation file?
homer annotatepeaks.pl written 9 weeks ago by salamandra • 180
0
votes
0
answers
167
views
0
answers
HOMER de novo motif enrichment
homer motif enrichment written 10 weeks ago by Lucy • 0
0
votes
0
answers
195
views
0
answers
How to convert Jaspar motif to input into homer?
homer jaspar written 3 months ago by a.rex • 170 • updated 10 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
159
views
0
answers
What should I choose to best specify background sequences when looking for motifs under peaks in Homer?
homer written 3 months ago by a.rex • 170
1
vote
1
answer
364
views
1
answer
Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 4 months ago by a.rex • 170 • updated 4 months ago by James Ashmore • 2.6k
0
votes
0
answers
318
views
0
answers
problem with HOMER findMotifsGenome.pl
homer atac-seq written 4 months ago by ste.lu • 40
0
votes
0
answers
403
views
0
answers
Homer findmotifs.pl keeps failing because it can't find the promoter set which is installed
homer findmotifs.pl written 5 months ago by sandKings • 10
1
vote
0
answers
340
views
0
answers
How do I perform a motif search on a specific fasta sequence?
homer enhancer written 5 months ago by a.rex • 170 • updated 5 months ago by RamRS ♦ 20k
0
votes
1
answer
227
views
1
answer
HOMER works incorrectly with -sspe option for paired-end reads
homer chip-seq written 6 months ago by biostart • 280 • updated 6 months ago by Kevin Blighe ♦ 37k
3
votes
1
answer
400
views
1
answer
Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
homer chip-seq motifs written 6 months ago by salamandra • 180 • updated 6 months ago by Kevin Blighe ♦ 37k
4
votes
1
answer
283
views
1
answer
How to mask motif in HOMER?
homer chip-seq mask motif written 6 months ago by salamandra • 180 • updated 6 months ago by Kevin Blighe ♦ 37k
2
votes
1
answer
475
views
1
answer
How to use a specific promoter set on findMotifs.pl of HOMER?
homer promoter set chip-seq motifs written 6 months ago by salamandra • 180 • updated 6 months ago by Kevin Blighe ♦ 37k
1
vote
2
answers
971
views
2
answers
annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 17 months ago by reubenmcgregor88 • 40 • updated 6 months ago by CrisMar • 70
1
vote
1
answer
2.9k
views
1
answer
HOMER find motifs from BED data
homer chip-seq written 3.1 years ago by morovatunc • 400 • updated 7 months ago by keryruo • 10
0
votes
0
answers
391
views
0
answers
eCLIP-seq U2AF2 motif called by homer
clip-seq u2af2 ngs homer written 11 months ago by limeng • 0 • updated 7 months ago by rebecagz1993 • 0
0
votes
1
answer
460
views
1
answer
Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 8 months ago by nanoide • 10 • updated 8 months ago by b.nota ♦ 6.1k
2
votes
2
answers
344
views
2
answers
HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
homer chip-seq written 8 months ago by theresa • 10 • updated 8 months ago by Prakash • 730
4
votes
1
answer
392
views
1
answer
How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 10 months ago by Bella_p • 50 • updated 10 months ago by b.nota ♦ 6.1k
1
vote
0
answers
337
views
0
answers
MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 10 months ago by takamichael • 0
0
votes
0
answers
377
views
0
answers
Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 10 months ago by endrebak • 690
0
votes
0
answers
306
views
0
answers
Homer [findMotifsGenome.pl] result interputation.
homer chip-seq motif written 10 months ago by chiefcat • 90
0
votes
0
answers
303
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 12 months ago by ChIP-seeker • 0
0
votes
0
answers
425
views
0
answers
HOMER Hi-C with more than one enzyme
hi-c homer written 13 months ago by Satyajeet Khare • 1.3k
0
votes
1
answer
882
views
1
answer
How to find list of gene name from HOMER motif output
homer motif written 13 months ago by Mike • 1.1k • updated 13 months ago by mcjmigdal • 10
1
vote
0
answers
486
views
0
answers
homer-annotation of the minus strand genes
5hmc homer strand annotation written 13 months ago by c2c12 • 0
<prev • 91 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • USA, just now
  • Germany, just now
  • France, just now
  • Belgium, 1 minute ago
  • Austria/Vienna, 1 minute ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1792 users visited in the last hour