Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: homer • reset
or   Classic search
<prev • 87 results • page 1 of 3 • next >
0
votes
0
answers
50
views
0
answers
HOMER de novo motif enrichment
homer motif enrichment written 7 days ago by Lucy • 0
0
votes
0
answers
101
views
0
answers
How to convert Jaspar motif to input into homer?
homer jaspar written 5 weeks ago by a.rex • 170 • updated 8 days ago by Biostar ♦♦ 20
0
votes
0
answers
112
views
0
answers
What should I choose to best specify background sequences when looking for motifs under peaks in Homer?
homer written 6 weeks ago by a.rex • 170
2
votes
0
answers
127
views
0
answers
Finding motifs with Homer for obscure species.
genome homer atac-seq written 6 weeks ago by a.rex • 170
0
votes
0
answers
86
views
0
answers
GRO-seq - low Same / Diff strand fold enrichment
gro-seq homer maketagdirectory written 7 weeks ago by l.moreno.uva • 0
1
vote
1
answer
239
views
1
answer
Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 8 weeks ago by a.rex • 170 • updated 8 weeks ago by James Ashmore • 2.5k
0
votes
0
answers
193
views
0
answers
problem with HOMER findMotifsGenome.pl
homer atac-seq written 9 weeks ago by ste.lu • 20
0
votes
0
answers
254
views
0
answers
Homer findmotifs.pl keeps failing because it can't find the promoter set which is installed
homer findmotifs.pl written 12 weeks ago by sandKings • 10
1
vote
0
answers
225
views
0
answers
How do I perform a motif search on a specific fasta sequence?
homer enhancer written 3 months ago by a.rex • 170 • updated 3 months ago by RamRS ♦ 19k
0
votes
1
answer
176
views
1
answer
HOMER works incorrectly with -sspe option for paired-end reads
homer chip-seq written 4 months ago by biostart • 260 • updated 4 months ago by Kevin Blighe ♦ 33k
3
votes
1
answer
284
views
1
answer
Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
homer chip-seq motifs written 4 months ago by salamandra • 180 • updated 4 months ago by Kevin Blighe ♦ 33k
4
votes
1
answer
231
views
1
answer
How to mask motif in HOMER?
homer chip-seq mask motif written 4 months ago by salamandra • 180 • updated 4 months ago by Kevin Blighe ♦ 33k
2
votes
1
answer
337
views
1
answer
How to use a specific promoter set on findMotifs.pl of HOMER?
homer promoter set chip-seq motifs written 4 months ago by salamandra • 180 • updated 4 months ago by Kevin Blighe ♦ 33k
1
vote
2
answers
854
views
2
answers
annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 15 months ago by reubenmcgregor88 • 40 • updated 4 months ago by CrisMar • 70
1
vote
1
answer
2.8k
views
1
answer
HOMER find motifs from BED data
homer chip-seq written 3.0 years ago by morovatunc • 380 • updated 4 months ago by keryruo • 10
0
votes
0
answers
344
views
0
answers
eCLIP-seq U2AF2 motif called by homer
clip-seq u2af2 ngs homer written 8 months ago by limeng • 0 • updated 5 months ago by rebecagz1993 • 0
0
votes
1
answer
357
views
1
answer
Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 5 months ago by nanoide • 10 • updated 5 months ago by b.nota ♦ 5.4k
2
votes
2
answers
269
views
2
answers
HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
homer chip-seq written 6 months ago by theresa • 10 • updated 6 months ago by prakash • 530
4
votes
1
answer
302
views
1
answer
How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 8 months ago by Bella_p • 50 • updated 8 months ago by b.nota ♦ 5.4k
1
vote
0
answers
288
views
0
answers
MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 8 months ago by takamichael • 0
0
votes
0
answers
298
views
0
answers
Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 8 months ago by endrebak • 680
0
votes
0
answers
260
views
0
answers
Homer [findMotifsGenome.pl] result interputation.
homer chip-seq motif written 8 months ago by chiefcat • 70
0
votes
0
answers
271
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 10 months ago by ChIP-seeker • 0
0
votes
0
answers
366
views
0
answers
HOMER Hi-C with more than one enzyme
hi-c homer written 11 months ago by Satyajeet Khare • 1.3k
0
votes
1
answer
758
views
1
answer
How to find list of gene name from HOMER motif output
homer motif written 11 months ago by Mike • 1.1k • updated 10 months ago by mcjmigdal • 10
1
vote
0
answers
424
views
0
answers
homer-annotation of the minus strand genes
5hmc homer strand annotation written 11 months ago by c2c12 • 0
99
votes
7
answers
19k
views
61 follow
7
answers
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.8 years ago by Sinji • 2.7k • updated 11 months ago by chiefcat • 70
0
votes
0
answers
375
views
0
answers
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
homer motif analysis written 11 months ago by JMallory • 0
0
votes
1
answer
1.9k
views
1
answer
Chipseq peaks HOMER annotation results
homer chip-seq written 2.2 years ago by Mike • 1.1k • updated 11 months ago by EagleEye ♦ 6.0k
0
votes
0
answers
739
views
0
answers
HOMER target sequence location
homer chip-seq motif written 21 months ago by rbronste • 230 • updated 12 months ago by bsharmi6 • 10
<prev • 87 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2289 users visited in the last hour