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<prev • 78 results • page 1 of 3 • next >
0
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1
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67
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HOMER works incorrectly with -sspe option for paired-end reads
homer chip-seq written 6 days ago by biostart • 240 • updated 3 days ago by Kevin Blighe ♦ 25k
3
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1
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99
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1
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Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
homer chip-seq motifs written 4 days ago by salamandra • 160 • updated 4 days ago by Kevin Blighe ♦ 25k
4
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1
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111
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1
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How to mask motif in HOMER?
homer chip-seq mask motif written 5 days ago by salamandra • 160 • updated 5 days ago by Kevin Blighe ♦ 25k
2
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1
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119
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1
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How to use a specific promoter set on findMotifs.pl of HOMER?
homer promoter set chip-seq motifs written 5 days ago by salamandra • 160 • updated 5 days ago by Kevin Blighe ♦ 25k
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2
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2
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annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 11 months ago by reubenmcgregor88 • 40 • updated 23 days ago by CrisMar • 70
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1
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2.4k
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1
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HOMER find motifs from BED data
homer chip-seq written 2.6 years ago by morovatunc • 360 • updated 4 weeks ago by keryruo • 0
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0
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227
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0
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eCLIP-seq U2AF2 motif called by homer
clip-seq u2af2 ngs homer written 5 months ago by limeng • 0 • updated 5 weeks ago by rebecagz1993 • 0
0
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1
answer
160
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1
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Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 8 weeks ago by nanoide • 10 • updated 8 weeks ago by b.nota ♦ 4.6k
2
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2
answers
135
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2
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HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
homer chip-seq written 9 weeks ago by theresa • 10 • updated 9 weeks ago by prakash • 240
4
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1
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180
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1
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How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 4 months ago by Bella_p • 50 • updated 4 months ago by b.nota ♦ 4.6k
1
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0
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175
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0
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MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 4 months ago by takamichael • 0
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0
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154
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0
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Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 4 months ago by endrebak • 650
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0
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155
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0
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Homer [findMotifsGenome.pl] result interputation.
homer chip-seq motif written 4 months ago by chiefcat • 70
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0
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209
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0
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MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 6 months ago by ChIP-seeker • 0
0
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0
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284
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0
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HOMER Hi-C with more than one enzyme
hi-c homer written 7 months ago by Satyajeet Khare • 1.3k
0
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1
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479
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1
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How to find list of gene name from HOMER motif output
homer motif written 7 months ago by Mike • 1.0k • updated 7 months ago by mcjmigdal • 10
1
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0
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302
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0
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homer-annotation of the minus strand genes
5hmc homer strand annotation written 7 months ago by c2c12 • 0
96
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7
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16k
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57 follow
7
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.4 years ago by Sinji • 2.7k • updated 7 months ago by chiefcat • 70
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0
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266
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Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
homer motif analysis written 7 months ago by JMallory • 0
0
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1
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1.6k
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1
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Chipseq peaks HOMER annotation results
homer chip-seq written 23 months ago by Mike • 1.0k • updated 7 months ago by EagleEye ♦ 5.6k
0
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0
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617
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0
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HOMER target sequence location
homer chip-seq motif written 17 months ago by rbronste • 170 • updated 8 months ago by bsharmi6 • 20
13
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1
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2.2k
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1
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 2.3 years ago by steve • 1.6k
2
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1
answer
719
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1
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Where are .motif files from homer knownResults?
homer chip-seq atac-seq motifs written 11 months ago by b.nota ♦ 4.6k • updated 9 months ago by Malcolm.Cook • 800
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0
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403
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0
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how do I use Homer with custom regions?
homer written 10 months ago by lavanya.kannan • 0
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1
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1.5k
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5 follow
1
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HOMER annotatePeaks.pl problem
homer chip-seq rna-seq written 10 months ago by Seq225 • 50
0
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0
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832
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findGenomeMotif.pl in Homer couldn't work properly
homer chip-seq written 11 months ago by xuenjun1 • 0 • updated 10 months ago by toniford125 • 0
0
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1
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659
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1
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Visualize smooth ChIP peaks with Homer makeUCSCfile
homer chip-seq ucsc written 14 months ago by varsha619 • 70 • updated 11 months ago by macmath • 130
0
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1
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716
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1
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Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias at 1st rank"
homer chip-seq motif written 11 months ago by chiefcat • 70 • updated 11 months ago by ildem • 20
1
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0
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466
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0
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RNA-seq gene list - HOMER Gene based analysis
homer rna-seq written 13 months ago by G.Car • 20
4
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1
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1.1k
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1
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Which peaks in the bed file output by MACS2 are significant ?
homer macs2.0 annotatepeaks.pl written 14 months ago by salamandra • 160 • updated 14 months ago by Devon Ryan ♦ 82k
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