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Visualize smooth ChIP peaks with Homer makeUCSCfile
homer chip-seq ucsc written 3 months ago by varsha619 • 20 • updated 6 days ago by macmath • 110
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1
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126
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1
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annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 8 days ago by reubenmcgregor88 • 30 • updated 8 days ago by genomax ♦ 33k
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170
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Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias at 1st rank"
homer chip-seq motif written 17 days ago by chiefcat • 70 • updated 16 days ago by ildem • 20
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131
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Where are .motif files from homer knownResults?
homer chip-seq atac-seq motifs written 22 days ago by b.nota • 3.5k
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151
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findGenomeMotif.pl in Homer couldn't work properly
homer chip-seq written 23 days ago by xuenjun1 • 0
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168
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RNA-seq gene list - HOMER Gene based analysis
homer rna-seq written 9 weeks ago by G.Car • 20
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1
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277
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1
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Which peaks in the bed file output by MACS2 are significant ?
homer macs2.0 annotatepeaks.pl written 3 months ago by salamandra • 70 • updated 3 months ago by Devon Ryan ♦ 70k
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1
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195
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1
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Using the Homer suite with conda
homer bioconda conda written 4 months ago by rioualen • 190 • updated 4 months ago by Devon Ryan ♦ 70k
1
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1
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271
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1
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Strand information when doing peak annotation with HOMER
homer ngs annotation written 4 months ago by jiab • 10 • updated 4 months ago by Lars Juhl Jensen ♦ 11k
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1
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903
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1
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Preparing a .bed for Homer annotation
homer annotatepeaks bed written 22 months ago by giroudpaul • 50 • updated 4 months ago by jiab • 10
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1
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352
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1
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getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 7 months ago by ron.eitan • 0 • updated 4 months ago by k.balaji93 • 10
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169
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Annotating chromatin interactions (interactions generated from HOMER)
hi-c homer written 5 months ago by swadha • 10
3
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1
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325
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1
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how to identify TATA box in a gene list
gene homer tools tata written 5 months ago by Lila M • 350 • updated 5 months ago by theobroma22 • 930
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1
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376
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1
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Homer detailed annotation
homer chip-seq annotate peaks written 6 months ago by xiaofeiwang198266 • 10 • updated 6 months ago by Lila M • 350
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329
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MEME vs. HOMER for de novo and known Motif finding
homer meme chip-seq motif written 6 months ago by rbronste • 140
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249
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HOMER target sequence location
homer chip-seq motif written 6 months ago by rbronste • 140
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7
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50 follow
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 18 months ago by Sinji • 2.5k • updated 6 months ago by Zhao fei • 0
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292
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Homer findMotifsGenome.pl error
homer chip-seq atac-seq motifs written 7 months ago by lvande • 40
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324
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Output file of motif instances
homer motif mscentipede written 7 months ago by rbronste • 140 • updated 7 months ago by geek_y ♦ 8.0k
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300
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Annotating significant interactions of Hi-C data of Barley (Hordeum vulgare)
homer written 7 months ago by swadha • 10
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0
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358
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0
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HOMER: how to plot xy scatter plots
homer chip-seq xy scatter plot written 9 months ago by alerodriguez • 40
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438
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Background regions for de novo Motif Discovery?
genome chip-seq motif homer sequencing written 12 months ago by ltosti88 • 0
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677
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Chipseq peaks HOMER annotation results
homer chip-seq written 12 months ago by Mike • 730
1
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1
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725
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1
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HOMER motif discovery gives inconsistent results on repeated runs
homer motif written 17 months ago by steve • 860 • updated 12 months ago by ashjay • 20
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521
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How to plot motif footprint?
footprint homer motif plot written 12 months ago by tamadomi • 10
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613
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Motifs: de novo vs known, number of hits
de novo homer motif written 12 months ago by tamadomi • 10
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 16 months ago by steve • 860 • updated 12 months ago by morovatunc • 360
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606
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How to convert HOMER's motif results to gene ID
homer motif atac-seq chip-seq written 13 months ago by tejaswi.iyyanki • 0 • updated 13 months ago by geek_y ♦ 8.0k
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1.2k
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How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
homer chip-seq written 13 months ago by varsha619 • 20
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473
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DNASE2TF + HOMER
homer dnase chip-seq rna-seq written 14 months ago by startup_biostar • 0 • updated 14 months ago by Satyajeet Khare • 1000
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