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<prev • 101 results • page 1 of 4 • next >
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HOMER annotatePeak -ghist --- lose of peaks?
homer annotatepeaks chip-seq histogram written 13 hours ago by martinm • 0
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1
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114
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How to bin my count data for the entire genome?
genome homer next-gen chip-seq sequencing written 20 days ago by fr • 100 • updated 19 days ago by Prakash • 1.2k
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155
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Can HOMER be used to predict the binding site of a transcription factor on a DNA sequence?
genome gene chip-seq rna-seq homer written 27 days ago by charlesgwellem • 0 • updated 27 days ago by Alex Reynolds ♦ 28k
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 5 weeks ago by mmaqueda • 0 • updated 5 weeks ago by ATpoint ♦ 18k
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 10 weeks ago by nanoide • 30 • updated 10 weeks ago by jared.andrews07 • 2.5k
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190
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Discrepancy in HOMER output
motif_finding chip-seq homer written 11 weeks ago by doan.dinh • 0
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223
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5 follow
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Getting motif instances corresponding to regions
regions homer motif analysis instances written 11 weeks ago by nanoide • 30 • updated 11 weeks ago by Alex Reynolds ♦ 28k
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142
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counting reads with HOMER and only .bed files
homer chip-seq counting reads written 12 weeks ago by xAZx • 0
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165
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Homer not finding any genomes?
homer chip-seq hic written 3 months ago by fr • 100
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HOMER findMotifsGenome.pl Local Optimisation Phase
de novo motif discovery homer chip-seq written 3 months ago by janepuh12 • 0
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1
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354
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Help with HOMER motif profile plots
homer motifs written 4 months ago by venu ♦ 6.2k
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278
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Homer annotatePeaks.pl custom GTF
gtf homer atac-seq written 5 months ago by Lucy • 0
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342
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Aligning RNA-seq and ATAC-seq gene annotations
homer gene annotation atac-seq rna-seq written 5 months ago by Lucy • 0
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Finding motifs with Homer for obscure species.
genome homer atac-seq written 8 months ago by a.rex • 190 • updated 5 months ago by Biostar ♦♦ 20
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GRO-seq - low Same / Diff strand fold enrichment
gro-seq homer maketagdirectory written 8 months ago by l.moreno.uva • 0 • updated 6 months ago by Biostar ♦♦ 20
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435
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Homer: annotate peaks with ensembl annotation (.gtf) file instead of UCSC anotation file?
homer annotatepeaks.pl written 6 months ago by salamandra • 210
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454
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HOMER de novo motif enrichment
homer motif enrichment written 6 months ago by Lucy • 0
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443
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How to convert Jaspar motif to input into homer?
homer jaspar written 7 months ago by a.rex • 190 • updated 6 months ago by Biostar ♦♦ 20
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What should I choose to best specify background sequences when looking for motifs under peaks in Homer?
homer written 7 months ago by a.rex • 190
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1
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 8 months ago by a.rex • 190 • updated 8 months ago by James Ashmore • 2.6k
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536
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problem with HOMER findMotifsGenome.pl
homer atac-seq written 8 months ago by ste.lu • 40
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Homer findmotifs.pl keeps failing because it can't find the promoter set which is installed
homer findmotifs.pl written 9 months ago by sandKings • 10
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How do I perform a motif search on a specific fasta sequence?
homer enhancer written 9 months ago by a.rex • 190 • updated 9 months ago by RamRS ♦ 22k
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1
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1
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HOMER works incorrectly with -sspe option for paired-end reads
homer chip-seq written 10 months ago by biostart • 290 • updated 10 months ago by Kevin Blighe ♦ 44k
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1
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Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
homer chip-seq motifs written 10 months ago by salamandra • 210 • updated 10 months ago by Kevin Blighe ♦ 44k
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How to mask motif in HOMER?
homer chip-seq mask motif written 10 months ago by salamandra • 210 • updated 10 months ago by Kevin Blighe ♦ 44k
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1
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711
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1
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How to use a specific promoter set on findMotifs.pl of HOMER?
homer promoter set chip-seq motifs written 10 months ago by salamandra • 210 • updated 10 months ago by Kevin Blighe ♦ 44k
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annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 21 months ago by reubenmcgregor88 • 40 • updated 11 months ago by CrisMar • 70
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HOMER find motifs from BED data
homer chip-seq written 3.5 years ago by morovatunc • 400 • updated 11 months ago by keryruo • 10
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eCLIP-seq U2AF2 motif called by homer
clip-seq u2af2 ngs homer written 15 months ago by limeng • 0 • updated 11 months ago by rebecagz1993 • 0
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