Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: homer • reset
or   Classic search
<prev • 82 results • page 1 of 3 • next >
1
vote
1
answer
101
views
1
answer
Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 3 days ago by a.rex • 150 • updated 3 days ago by James Ashmore • 2.5k
0
votes
0
answers
65
views
0
answers
problem with HOMER findMotifsGenome.pl
homer atac-seq written 7 days ago by ste.lu • 20
0
votes
0
answers
144
views
0
answers
Homer findmotifs.pl keeps failing because it can't find the promoter set which is installed
homer findmotifs.pl written 27 days ago by sandKings • 10
1
vote
0
answers
131
views
0
answers
How do I perform a motif search on a specific fasta sequence?
homer enhancer written 5 weeks ago by a.rex • 150 • updated 5 weeks ago by RamRS ♦ 18k
0
votes
1
answer
140
views
1
answer
HOMER works incorrectly with -sspe option for paired-end reads
homer chip-seq written 9 weeks ago by biostart • 240 • updated 8 weeks ago by Kevin Blighe ♦ 30k
3
votes
1
answer
198
views
1
answer
Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
homer chip-seq motifs written 9 weeks ago by salamandra • 170 • updated 9 weeks ago by Kevin Blighe ♦ 30k
4
votes
1
answer
175
views
1
answer
How to mask motif in HOMER?
homer chip-seq mask motif written 9 weeks ago by salamandra • 170 • updated 9 weeks ago by Kevin Blighe ♦ 30k
2
votes
1
answer
229
views
1
answer
How to use a specific promoter set on findMotifs.pl of HOMER?
homer promoter set chip-seq motifs written 9 weeks ago by salamandra • 170 • updated 9 weeks ago by Kevin Blighe ♦ 30k
1
vote
2
answers
758
views
2
answers
annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 13 months ago by reubenmcgregor88 • 40 • updated 11 weeks ago by CrisMar • 70
1
vote
1
answer
2.5k
views
1
answer
HOMER find motifs from BED data
homer chip-seq written 2.8 years ago by morovatunc • 380 • updated 3 months ago by keryruo • 10
0
votes
0
answers
292
views
0
answers
eCLIP-seq U2AF2 motif called by homer
clip-seq u2af2 ngs homer written 6 months ago by limeng • 0 • updated 3 months ago by rebecagz1993 • 0
0
votes
1
answer
238
views
1
answer
Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 3 months ago by nanoide • 10 • updated 3 months ago by b.nota ♦ 5.0k
2
votes
2
answers
208
views
2
answers
HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
homer chip-seq written 4 months ago by theresa • 10 • updated 4 months ago by prakash • 510
4
votes
1
answer
240
views
1
answer
How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 6 months ago by Bella_p • 50 • updated 6 months ago by b.nota ♦ 5.0k
1
vote
0
answers
230
views
0
answers
MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 6 months ago by takamichael • 0
0
votes
0
answers
226
views
0
answers
Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 6 months ago by endrebak • 680
0
votes
0
answers
217
views
0
answers
Homer [findMotifsGenome.pl] result interputation.
homer chip-seq motif written 6 months ago by chiefcat • 70
0
votes
0
answers
245
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 8 months ago by ChIP-seeker • 0
0
votes
0
answers
318
views
0
answers
HOMER Hi-C with more than one enzyme
hi-c homer written 9 months ago by Satyajeet Khare • 1.3k
0
votes
1
answer
632
views
1
answer
How to find list of gene name from HOMER motif output
homer motif written 9 months ago by Mike • 1.0k • updated 9 months ago by mcjmigdal • 10
1
vote
0
answers
363
views
0
answers
homer-annotation of the minus strand genes
5hmc homer strand annotation written 9 months ago by c2c12 • 0
97
votes
7
answers
18k
views
59 follow
7
answers
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.6 years ago by Sinji • 2.7k • updated 9 months ago by chiefcat • 70
0
votes
0
answers
326
views
0
answers
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
homer motif analysis written 9 months ago by JMallory • 0
0
votes
1
answer
1.7k
views
1
answer
Chipseq peaks HOMER annotation results
homer chip-seq written 2.1 years ago by Mike • 1.0k • updated 9 months ago by EagleEye ♦ 5.7k
0
votes
0
answers
688
views
0
answers
HOMER target sequence location
homer chip-seq motif written 19 months ago by rbronste • 170 • updated 10 months ago by bsharmi6 • 20
13
votes
1
answer
2.3k
views
1
answer
Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 2.4 years ago by steve • 1.7k
2
votes
1
answer
892
views
1
answer
Where are .motif files from homer knownResults?
homer chip-seq atac-seq motifs written 13 months ago by b.nota ♦ 5.0k • updated 11 months ago by Malcolm.Cook • 850
0
votes
0
answers
491
views
0
answers
how do I use Homer with custom regions?
homer written 12 months ago by lavanya.kannan • 0
5
votes
1
answer
1.7k
views
5 follow
1
answer
HOMER annotatePeaks.pl problem
homer chip-seq rna-seq written 12 months ago by Seq225 • 50
0
votes
0
answers
1.0k
views
0
answers
findGenomeMotif.pl in Homer couldn't work properly
homer chip-seq written 13 months ago by xuenjun1 • 0 • updated 12 months ago by toniford125 • 0
<prev • 82 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, just now
  • NCCS, Pune, 1 minute ago
  • Czech republic, 5 minutes ago
  • Seattle, WA USA, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1165 users visited in the last hour