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<prev • 132 results • page 1 of 5 • next >
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annotationPeaks.pl algorithm for defining promoter-Tss
homer annotationpeaks.pl promoter-tss tss written 15 days ago by yahelsal • 0
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86
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Extend ChIP-seq peaks to known Restriction Enzyme Digest Sites?
peak calling macs2 chip-seq homer written 13 days ago by science_lizard • 0
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117
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Is it acceptable to use different FDR cutoffs for peak calling in different ChIP-seq experiments (with same antibody)?
fdr peak calling chip-seq homer statistics written 17 days ago by science_lizard • 0 • updated 17 days ago by benformatics • 1.7k
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ERRBS Methylation data analysis
homer errbs next-gen methylation bisulfite written 4.8 years ago by madkitty • 610 • updated 17 days ago by anairlema • 0
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64
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eCLIP-seq peak calling using HOMER
clip-seq homer algorithm rna-seq peak written 17 days ago by dahun73 • 10
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70
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how to set a appropriate background file when using HOMER findMotifGenome.pl
homer motif written 22 days ago by guandongshang • 0
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115
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Every time the results of findMotifGenome.pl in HOMER is different
homer motif written 29 days ago by guandongshang • 0
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82
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HOMER load genomes not working
genome homer rna pombe bioinformatics written 5 weeks ago by c78483 • 0 • updated 5 weeks ago by genomax ♦ 87k
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89
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HOMER hg19 not found in config.txt
homer finding motif written 7 weeks ago by jeni • 20
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124
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conda install homer
homer conda written 7 weeks ago by amitpande74 • 0
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Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
homer motif analysis written 2.6 years ago by JMallory • 0 • updated 10 weeks ago by Biostar ♦♦ 20
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158
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5 follow
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HOMER error -bash: ./ctcf.motif: Permission denied
software error homer chip-seq sequencing written 3 months ago by gerardo_za_94 • 10
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123
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Can't find documentation about output of homer2 find command
homer motif enrichment written 4 months ago by colin.kern • 920
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146
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Homer analysis result on -region output format error
homer chip-seq written 4 months ago by Jamie_Francesco • 0
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188
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How to get Motif positions by peak (not by Chromosome) using Homer annotatePeaks.pl ??
homer annotatepeaks peakid positions motif written 5 months ago by carina2817 • 20
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HOMER annotatePeaks.pl with GFF. How to specify a feature?
homer gff chip-seq peakcalling annotation written 5 months ago by callapus • 0
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271
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Classify gene ontology (GO) enrichment terms
homer gene ontology classification chip-seq written 6 months ago by yepeh72919 • 10 • updated 6 months ago by tamerg • 80
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Finding over and under-represented interactions using HOMER
homer hic written 7 months ago by pixie@bioinfo • 1.4k
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357
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Homer's findPeaks: normalized Tag counts, Peak Score, and RPKMs
homer chip-seq atac-seq written 7 months ago by fr • 130
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199
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homer IDR, pseudoreplicates error
homer idr faire written 7 months ago by boczniak767 • 690
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181
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How to address location of temporary file issue when converting Homer tag directories to hi-c files?
homer juicer hi-c juicer_tools written 7 months ago by J.J. on Biostars • 0
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260
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Strange output from Homer findPeaks
atacseq homer atac-seq written 8 months ago by fr • 130 • updated 7 months ago by panxingxin16 • 0
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 4.4 years ago by Sinji • 3.0k • updated 7 months ago by Ömer An • 200
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meaning of "Total subpeaks" in Homer's mergePeaks?
homer chip-seq atac-seq written 7 months ago by fr • 130
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182
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HOMER Known Motifs - Genome-wide predictions
homer motif human zoops written 8 months ago by Sergio • 0
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How to annotate peaks without strand information
peak homer written 10 months ago by ashafik • 0 • updated 8 months ago by Biostar ♦♦ 20
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HOMER HiC interactions
homer hic written 9 months ago by srhic • 0
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5 follow
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 22 months ago by a.rex • 220 • updated 10 months ago by danvoronov • 10
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581
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Refseq TSS vs Ensemble TSS
homer ensemble refseq tss written 11 months ago by srhic • 0
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 4.2 years ago by steve • 2.6k
<prev • 132 results • page 1 of 5 • next >
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