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<prev • 110 results • page 1 of 4 • next >
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HOMER HiC interactions
homer hic written 10 days ago by srhic • 0
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109
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How to annotate peaks without strand information
peak homer written 7 weeks ago by ashafik • 0
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2
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922
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5 follow
2
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 13 months ago by a.rex • 190 • updated 8 weeks ago by danvoronov • 10
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1
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167
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1
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Refseq TSS vs Ensemble TSS
homer ensemble refseq tss written 11 weeks ago by srhic • 0
110
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8
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26k
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71 follow
8
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 3.7 years ago by Sinji • 2.9k • updated 3 months ago by ATpoint ♦ 25k
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1
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3.2k
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 3.5 years ago by steve • 2.4k
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1
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208
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1
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HOMER tss command not working
homer chip-seq tss written 3 months ago by carlee.bettler • 10 • updated 3 months ago by arup • 1.9k
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1
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299
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5 follow
1
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How to find peaks which have specific TF motif sequence
homer motif analysis chip-seq written 3 months ago by km1986 • 0 • updated 3 months ago by ATpoint ♦ 25k
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140
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Peak annotation with HOMER. Statistics with the annStats parameter
homer annotatepeaks.pl stats chip-seq written 3 months ago by nanoide • 30
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354
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 6 months ago by mmaqueda • 0 • updated 3 months ago by Biostar ♦♦ 20
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125
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Question about HOMER peak annotation to some features. Customize gff3?
homer chip-seq annotation written 3 months ago by nanoide • 30
3
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1
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219
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1
answer
homer makebigwig error
homer chip-seq written 4 months ago by yueli7 • 50 • updated 4 months ago by ATpoint ♦ 25k
2
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1
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219
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1
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Homer annotatePeaks on genomic regions
homer annotatepeaks chip-seq written 4 months ago by fr • 110 • updated 4 months ago by bruss • 20
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125
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HOMER annotatePeak -ghist --- lose of peaks?
homer annotatepeaks chip-seq histogram written 4 months ago by martinm • 0
7
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1
answer
333
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1
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How to bin my count data for the entire genome?
genome homer next-gen chip-seq sequencing written 5 months ago by fr • 110 • updated 5 months ago by Prakash • 1.7k
2
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1
answer
317
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1
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Can HOMER be used to predict the binding site of a transcription factor on a DNA sequence?
genome gene chip-seq rna-seq homer written 5 months ago by charlesgwellem • 0 • updated 5 months ago by Alex Reynolds ♦ 29k
1
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1
answer
226
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1
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 7 months ago by nanoide • 30 • updated 7 months ago by jared.andrews07 • 3.9k
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340
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Discrepancy in HOMER output
motif_finding chip-seq homer written 7 months ago by doan.dinh • 0
5
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2
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389
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5 follow
2
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Getting motif instances corresponding to regions
regions homer motif analysis instances written 7 months ago by nanoide • 30 • updated 7 months ago by Alex Reynolds ♦ 29k
2
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254
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counting reads with HOMER and only .bed files
homer chip-seq counting reads written 7 months ago by xAZx • 0
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315
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Homer not finding any genomes?
homer chip-seq hic written 8 months ago by fr • 110
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197
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HOMER findMotifsGenome.pl Local Optimisation Phase
de novo motif discovery homer chip-seq written 8 months ago by janepuh12 • 0
4
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1
answer
522
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1
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Help with HOMER motif profile plots
homer motifs written 9 months ago by venu ♦ 6.3k
2
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0
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530
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0
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Homer annotatePeaks.pl custom GTF
gtf homer atac-seq written 9 months ago by Lucy • 40
0
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0
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579
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Aligning RNA-seq and ATAC-seq gene annotations
homer gene annotation atac-seq rna-seq written 10 months ago by Lucy • 40
3
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520
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Finding motifs with Homer for obscure species.
genome homer atac-seq written 12 months ago by a.rex • 190 • updated 10 months ago by Biostar ♦♦ 20
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300
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GRO-seq - low Same / Diff strand fold enrichment
gro-seq homer maketagdirectory written 13 months ago by l.moreno.uva • 0 • updated 10 months ago by Biostar ♦♦ 20
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769
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Homer: annotate peaks with ensembl annotation (.gtf) file instead of UCSC anotation file?
homer annotatepeaks.pl written 11 months ago by salamandra • 240
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782
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HOMER de novo motif enrichment
homer motif enrichment written 11 months ago by Lucy • 40
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674
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0
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How to convert Jaspar motif to input into homer?
homer jaspar written 12 months ago by a.rex • 190 • updated 11 months ago by Biostar ♦♦ 20
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