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4
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1
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74
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How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 14 days ago by Bella_p • 50 • updated 14 days ago by b.nota • 3.7k
1
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0
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98
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0
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MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 23 days ago by takamichael • 0
0
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0
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54
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0
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Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 29 days ago by endrebak • 570
0
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0
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77
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0
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Homer [findMotifsGenome.pl] result interputation.
homer chip-seq motif written 29 days ago by chiefcat • 70
0
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0
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108
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0
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eCLIP-seq U2AF2 motif called by homer
clip-seq u2af2 ngs homer written 5 weeks ago by limeng • 0
0
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0
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158
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0
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MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 10 weeks ago by ChIP-seeker • 0
0
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0
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208
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0
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HOMER Hi-C with more than one enzyme
hi-c homer written 3 months ago by Satyajeet Khare • 1.2k
0
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1
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282
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1
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How to find list of gene name from HOMER motif output
homer motif written 3 months ago by Mike • 950 • updated 3 months ago by mcjmigdal • 10
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0
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206
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0
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homer-annotation of the minus strand genes
5hmc homer strand annotation written 3 months ago by c2c12 • 0
94
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7
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14k
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55 follow
7
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.1 years ago by Sinji • 2.6k • updated 3 months ago by chiefcat • 70
0
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0
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186
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0
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Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
homer motif analysis written 3 months ago by JMallory • 0
0
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1
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1.2k
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1
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Chipseq peaks HOMER annotation results
homer chip-seq written 19 months ago by Mike • 950 • updated 4 months ago by EagleEye • 5.0k
0
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0
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482
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0
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HOMER target sequence location
homer chip-seq motif written 14 months ago by rbronste • 160 • updated 4 months ago by bsharmi6 • 20
13
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1
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1.9k
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1
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 23 months ago by steve • 1.4k
2
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1
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495
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1
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Where are .motif files from homer knownResults?
homer chip-seq atac-seq motifs written 7 months ago by b.nota • 3.7k • updated 6 months ago by Malcolm.Cook • 790
0
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0
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278
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0
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how do I use Homer with custom regions?
homer written 6 months ago by lavanya.kannan • 0
4
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1
answer
862
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1
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HOMER annotatePeaks.pl problem
homer chip-seq rna-seq written 7 months ago by mosharrofgeb • 30
0
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2
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553
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2
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findGenomeMotif.pl in Homer couldn't work properly
homer chip-seq written 8 months ago by xuenjun1 • 0 • updated 7 months ago by toniford125 • 0
0
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1
answer
506
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1
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Visualize smooth ChIP peaks with Homer makeUCSCfile
homer chip-seq ucsc written 10 months ago by varsha619 • 60 • updated 7 months ago by macmath • 120
0
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1
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453
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1
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annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 7 months ago by reubenmcgregor88 • 40 • updated 7 months ago by genomax ♦ 46k
0
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1
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531
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1
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Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias at 1st rank"
homer chip-seq motif written 7 months ago by chiefcat • 70 • updated 7 months ago by ildem • 20
1
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0
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375
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0
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RNA-seq gene list - HOMER Gene based analysis
homer rna-seq written 9 months ago by G.Car • 20
4
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1
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795
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1
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Which peaks in the bed file output by MACS2 are significant ?
homer macs2.0 annotatepeaks.pl written 10 months ago by salamandra • 110 • updated 10 months ago by Devon Ryan ♦ 78k
1
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1
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457
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1
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Using the Homer suite with conda
homer bioconda conda written 11 months ago by rioualen • 260 • updated 11 months ago by Devon Ryan ♦ 78k
2
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1
answer
705
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1
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Strand information when doing peak annotation with HOMER
homer ngs annotation written 11 months ago by jiab • 20 • updated 11 months ago by Lars Juhl Jensen ♦ 11k
1
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1
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1.2k
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1
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Preparing a .bed for Homer annotation
homer annotatepeaks bed written 2.4 years ago by giroudpaul • 50 • updated 11 months ago by jiab • 20
1
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1
answer
565
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1
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getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 14 months ago by ron.eitan • 0 • updated 11 months ago by k.balaji93 • 10
0
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0
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340
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0
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Annotating chromatin interactions (interactions generated from HOMER)
hi-c homer written 12 months ago by swadha • 10
3
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1
answer
623
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1
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how to identify TATA box in a gene list
gene homer tools tata written 12 months ago by Lila M • 370 • updated 12 months ago by theobroma22 • 1.1k
2
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1
answer
814
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1
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Homer detailed annotation
homer chip-seq annotate peaks written 13 months ago by xiaofeiwang198266 • 10 • updated 13 months ago by Lila M • 370
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