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13
votes
1
answer
5.4k
views
8 follow
1
answer
HOMER annotatePeaks.pl problem
homer chip-seq rna-seq written 3.1 years ago by Seq225 • 90 • updated 1 day ago by jimmy0958073736 • 0
0
votes
0
answers
45
views
0
answers
findMotif p-value dependency
homer motif written 7 days ago by floriandeckert • 0
0
votes
0
answers
136
views
0
answers
HOMER: ./findMotifsGenome.pl
homer chip-seq written 26 days ago by radicav06 • 0 • updated 11 days ago by Biostar ♦♦ 20
0
votes
0
answers
885
views
0
answers
HOMER Hi-C with more than one enzyme
hi-c homer written 2.8 years ago by Satyajeet Khare • 1.6k • updated 19 days ago by smurthy • 0
1
vote
0
answers
1.6k
views
0
answers
problem with HOMER findMotifsGenome.pl
homer atac-seq written 2.0 years ago by ste.lu • 60 • updated 26 days ago by radicav06 • 0
1
vote
1
answer
985
views
1
answer
Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 2.6 years ago by endrebak • 840 • updated 27 days ago by jared.andrews07 ♦ 7.5k
0
votes
1
answer
123
views
1
answer
Homer: removeOutOfBoundsReads.pl command cannot find chromosome size file
homer next-gen atac seq rna-seq written 7 weeks ago by rb56 • 0
0
votes
1
answer
230
views
1
answer
annotationPeaks.pl algorithm for defining promoter-Tss
homer annotationpeaks.pl promoter-tss tss written 3 months ago by yahelsal • 0
0
votes
0
answers
161
views
0
answers
Extend ChIP-seq peaks to known Restriction Enzyme Digest Sites?
peak calling macs2 chip-seq homer written 12 weeks ago by science_lizard • 0
1
vote
1
answer
190
views
1
answer
Is it acceptable to use different FDR cutoffs for peak calling in different ChIP-seq experiments (with same antibody)?
fdr peak calling chip-seq homer statistics written 3 months ago by science_lizard • 0 • updated 3 months ago by benformatics • 2.0k
1
vote
2
answers
1.8k
views
2
answers
ERRBS Methylation data analysis
homer errbs next-gen methylation bisulfite written 5.0 years ago by madkitty • 620 • updated 3 months ago by anairlema • 0
0
votes
0
answers
118
views
0
answers
eCLIP-seq peak calling using HOMER
clip-seq homer algorithm rna-seq peak written 3 months ago by dahun73 • 10
0
votes
0
answers
129
views
0
answers
how to set a appropriate background file when using HOMER findMotifGenome.pl
homer motif written 3 months ago by guandongshang • 0
3
votes
0
answers
168
views
0
answers
Every time the results of findMotifGenome.pl in HOMER is different
homer motif written 3 months ago by guandongshang • 0
0
votes
0
answers
144
views
0
answers
HOMER load genomes not working
genome homer rna pombe bioinformatics written 3 months ago by c78483 • 0 • updated 3 months ago by genomax ♦ 91k
0
votes
0
answers
197
views
0
answers
HOMER hg19 not found in config.txt
homer finding motif written 4 months ago by jeni • 30
1
vote
1
answer
251
views
1
answer
conda install homer
homer conda written 4 months ago by amitpande74 • 0
0
votes
0
answers
887
views
0
answers
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
homer motif analysis written 2.8 years ago by JMallory • 0 • updated 5 months ago by Biostar ♦♦ 20
3
votes
0
answers
213
views
5 follow
0
answers
HOMER error -bash: ./ctcf.motif: Permission denied
software error homer chip-seq sequencing written 6 months ago by gerardo_za_94 • 10
0
votes
0
answers
154
views
0
answers
Can't find documentation about output of homer2 find command
homer motif enrichment written 7 months ago by colin.kern • 930
0
votes
0
answers
192
views
0
answers
Homer analysis result on -region output format error
homer chip-seq written 7 months ago by Jamie_Francesco • 0
0
votes
0
answers
248
views
0
answers
How to get Motif positions by peak (not by Chromosome) using Homer annotatePeaks.pl ??
homer annotatepeaks peakid positions motif written 7 months ago by carina2817 • 20
0
votes
0
answers
185
views
0
answers
HOMER annotatePeaks.pl with GFF. How to specify a feature?
homer gff chip-seq peakcalling annotation written 7 months ago by callapus • 0
1
vote
1
answer
353
views
1
answer
Classify gene ontology (GO) enrichment terms
homer gene ontology classification chip-seq written 9 months ago by yepeh72919 • 10 • updated 9 months ago by tamerg • 90
0
votes
0
answers
165
views
0
answers
Finding over and under-represented interactions using HOMER
homer hic written 9 months ago by pixie@bioinfo • 1.4k
1
vote
0
answers
519
views
0
answers
Homer's findPeaks: normalized Tag counts, Peak Score, and RPKMs
homer chip-seq atac-seq written 9 months ago by fr • 140
0
votes
0
answers
261
views
0
answers
homer IDR, pseudoreplicates error
homer idr faire written 9 months ago by boczniak767 • 690
0
votes
0
answers
232
views
0
answers
How to address location of temporary file issue when converting Homer tag directories to hi-c files?
homer juicer hi-c juicer_tools written 9 months ago by J.J. on Biostars • 0
0
votes
0
answers
292
views
0
answers
Strange output from Homer findPeaks
atacseq homer atac-seq written 10 months ago by fr • 140 • updated 10 months ago by panxingxin16 • 0
115
votes
9
answers
31k
views
74 follow
9
answers
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 4.6 years ago by Sinji • 3.0k • updated 10 months ago by Ömer An • 200
<prev • 135 results • page 1 of 5 • next >
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