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Page: How to add images to a Biostars post

page how-to written 5 months ago by RamRS ♦ 17k

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Forum: How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking

meta how-to forum documentation written 2.6 years ago by RamRS ♦ 17k

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Forum: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies

meta how-to forum documentation written 2.6 years ago by RamRS ♦ 17k • updated 2.5 years ago by Michael Dondrup ♦ 44k

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Recent Replies

C: GATK 4 GenomeAnalysisTK still available? (Unable to access jarfile) by marongiu.luigi • 310
I have seen that post but I think it relates on how to launch GATK and see the available tools. I...
C: GATK 4 GenomeAnalysisTK still available? (Unable to access jarfile) by zx8754 ♦ 5.0k
Related / Possible duplicate post: https://www.biostars.org/p/304281/
C: GATK 4 GenomeAnalysisTK still available? (Unable to access jarfile) by marongiu.luigi • 310
I guess this [post][1] might shed light, is that so? GenomeAnalysisTK has been replaced by Realig...
A: bwa mem low depth and fluctuating plot by singh.vijender • 20
The plot looks fine to me. What read depth are you expecting? From the graph, it appears to have...
A: hisat2 warning message dunring alignment of fasta file with reference genome by singh.vijender • 20
The quickest test I would do is to check the insert size distribution of 1st million reads and if...
C: Removal of repeat and blacklist regions from ChIP-seq data by Devon Ryan ♦ 84k
Public versions [now exist](https://sites.google.com/site/anshulkundaje/projects/blacklists)
C: Removal of repeat and blacklist regions from ChIP-seq data by Firas • 0
Would you mind sharing the DKFZ blacklist with me as well? Many thanks. myusername[at]ymail.com
C: Bwa Mem Have Different Alignment Result When Using Different Threads by Dan Gaston ♦ 7.0k
BWA is now up to version 0.7.17, 0.7.12 was released in December of 2014. The solution is to upgr...
A: bowtie2 alignments "Error: No input read files were valid" by Devon Ryan ♦ 84k
You need the full path for each of the files separated by commas.
A: bowtie2 alignments "Error: No input read files were valid" by genomax ♦ 55k
Unless you are in `/home/luz_garcia_longoria/workspace` directory when you issue the bowtie2 comm...
A: Batch effect in RNAseq by Devon Ryan ♦ 84k
The standard methods for dealing with a batch effect are: 1. Add it to you model (e.g., in DESeq...
C: How to take input TCGA miRNA data in Limma R package for differential expression by Kevin Blighe ♦ 28k
...and you just have a single column of values? Sorry for the late follow-up - I missed your resp...

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