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comparative proteomic analysis
How to compare two proteomes
Answer: RNA Editing data from RNA-seq
C: Sequence length from Fasta
Comment: RNA Editing data from RNA-seq
Answer: Prokka annotation in several tools
Answer: Prokka annotation in several tools
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Jimmy
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That was fast! Thanks!
Answer: command line - how to change name of multiple files at the same time
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shenwei356
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Try [brename](https://github.com/shenwei356/brename), it's safe and powerful. also read this post: https://www.biostars.org/p/9487877/ …
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The `brename` version should be brename -p '^(\w+?)_.+([12]).fastq.gz$' -r '${1}_$2.fastq.gz'
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I think the issue is that the `seqlevels `do not match. Apparently, one should be a subset of the other. You could try restricting only to …
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I do not know how you want to downsample vcf file,. However, to downsample reads, you can use `seqtk sample` https://github.com/lh3/seqtk …
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I would also recommend checking out a different star allele-calling tool named PyPGx (see [docs](https://pypgx.readthedocs.io/en/latest/rea…
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I prefer the `rename` tool. I think you might need to install it with either something like `apt` (ubuntu), or `conda` (Linux, Mac, Windows…
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If I'm interpreting you correctly, you want to compare the VCF files, ignore SNPs shared by two (or more) species, and instead retain only …
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Thank you I realized that the mistake I made was by not making a docker image.
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Which ID and QUAL values do you pick for the output VCF record? That choice makes the difference.
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> I've queried the Panther database, but unfortunately it does not return annotations for all of my genes. For any reasonably-sized quer…
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What organism are you interested in? If this is for human, then `GeneCards` has a lot of information available. [**An example gene**][1].…
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Hi @seidel. I run this one: markers_cluster_8 <- FindConservedMarkers(CV.harmony, ident.1 = 8, …
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Any follow-up on this? It's been a long time this question was posted and maybe you found a way to do it. I would be glad to find a solutio…
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Could you please give one example of result you got from plantCARE please. I found lots of CREs, some with no define function in the descr…
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