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rebeliscu
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iraun
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Recent Replies
Comment: Weird looking dispersion & MA plot?
by
seidel
11k
> looks totally different from what I expected
What did you expect? Do you have 3 replicates of untreated control, and 96 replicates of th…
Comment: SRA Taxonomy Analysis - difference between tables and web
by
Art_SG
•
0
Yes, I sent them a ticket about it already. I will post if have any reasonable response. So far for 70% datasets that I was trying result i…
Comment: How much reads per cell for fusion detection with Nanopore ?
by
dthorbur
▴
410
Having looked a little more in depth into the requirements of JAFFAL, it's actually not recommended to be used with Nanopore due to the rel…
Comment: Using AWS for Bioinformatics
by
Simon
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10
Thanks for your guidance Mensur, much appreciated
Answer: Astalavista landscape AS gtf file output
by
xizengde
•
0
Hi!
I have the same problem. How do you solve the problem finally?
Comment: Using AWS for Bioinformatics
by
Mensur Dlakic
★
23k
Your posts indicate that you are primarily here to promote your company, which is fine. Rather than posting randomly in threads that are mo…
Comment: How to find promoter sequence of a gene?
by
Mensur Dlakic
★
23k
Why is it so difficult to provide proper information? Presumably you know that finding promoters in prokaryotes and eukaryotes are two comp…
Comment: Stringtie does not work with NCBI GTF file?
by
Mensur Dlakic
★
23k
There is a way to delete posts, but there is no need to do it. Just because you found the solution doesn't mean this stops being a problem …
Answer: Using AWS for Bioinformatics
by
Simon
▴
10
In case you weren't aware, bioinformatics platform technology has moved on quite a bit in recent years so I thought I would point out an al…
Answer: Stringtie does not work with NCBI GTF file?
by
100dustedclays
▴
10
Is there a way to delete this post?
I have found a solution from https://www.biostars.org/p/488062/
NCBI has an extra line in the gtf…
Answer: Bioinformatics Server on AWS
by
Simon
▴
10
I realize this answer is so late that it is unlikely to be of use to the original poster, but given technology has moved on quite a bit in …
Comment: TSS of protein coding genes
by
ConvolutedGenome
▴
10
I seee,
But consider this scenario:
what if a particular transcript of a gene exists as a result of first-exon skipping? As I understood i…
Answer: NCBI's Foreign Contamination Screen (FCS) tool improves the quality of GenBank
by
Mensur Dlakic
★
23k
I give you guys credit for sharing the tool, as it is always nice to have an option for local runs. Still, a 512 Gb RAM requirement will se…
Comment: how to get to a VCF from bam files
by
Human
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0
Thanks! I definitely gonna give it a try. Would you also recommend this for my short term success in terms of this task too? I definitely w…
Comment: Run nextflow sections sequentially
by
Raygozak
★
1.4k
Does the word running has a different meaning of what i'm thinking?
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