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<prev • 155 results • page 1 of 6 • next >
1
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1
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44
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1
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htseq-count without GTF?
htseq count fpkm htseq-count gtf written 3 days ago by blur • 140 • updated 3 days ago by ATpoint ♦ 40k
0
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1
answer
1.2k
views
1
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GAPDH missing from htseq-counts file
htseq gapdh nonunique written 3.0 years ago by melia_g • 0 • updated 22 days ago by Biostar ♦♦ 20
1
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1
answer
116
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1
answer
HTseq feature count handling of transcripts with shared exons?
htseq rna-seq dge written 6 weeks ago by danekhoffman0319 • 0 • updated 6 weeks ago by i.sudbery ♦ 9.4k
0
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0
answers
105
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0
answers
Problem with writing reads with HTSeq.BAM_Writer
htseq bam_writer written 9 weeks ago by daria.d.kozhevnikova • 0 • updated 8 weeks ago by Biostar ♦♦ 20
0
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0
answers
140
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0
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htseq-count with bam file not working
htseq written 12 weeks ago by Amaranta_Remedios • 0
0
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0
answers
171
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0
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DESeq DataSet from HTSeqCount Error
htseq galaxy rna-seq written 4 months ago by mahejabeen.nidhi • 10
1
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0
answers
284
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0
answers
What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 6 months ago by Gabriel • 60
0
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0
answers
180
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0
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HTSeq --nonunique all does not work
htseq --nonunique rna-seq written 7 months ago by rafaelsolersanblas • 20
7
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2
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13k
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2
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Comparison Htseq And Feature Count
htseq written 6.6 years ago by HNK • 140 • updated 8 months ago by Biostar ♦♦ 20
10
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3
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6.0k
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3
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htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 4.9 years ago by Gary • 480 • updated 8 months ago by Payal • 90
0
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0
answers
312
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0
answers
Sequencing Strandedness and Differences in Expression Readouts Between stringtie and htseq
htseq stringtie expression rna-seq written 9 months ago by kmhum • 0
2
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1
answer
537
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7 follow
1
answer
How to interpret the differences of read counts using htseq and feature counts?
htseq next-gen featurecounts rna-seq written 9 months ago by 2822462298 • 50 • updated 9 months ago by michael.ante • 3.6k
2
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0
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250
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0
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optimise htseq count performance by choosing proper samtools sort options
htseq rna samtools rna-seq written 9 months ago by 2822462298 • 50
0
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0
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202
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0
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HTSeq output Gene format unfamiliar
htseq gene name rna-seq written 10 months ago by omicsnstuff • 0
0
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0
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218
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0
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HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
htseq rna-seq written 10 months ago by sbrashidx • 0
8
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1
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4.5k
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1
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HTSeq error when reading BAM file
htseq rna-seq written 4.1 years ago by Mike • 1.6k • updated 10 months ago by Biostar ♦♦ 20
0
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0
answers
194
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0
answers
'HTSeq._HTSeq.GenomicInterval' object has no attribute 'xrange'
htseq python rna-seq written 12 months ago by zhangdengwei • 130 • updated 10 months ago by Biostar ♦♦ 20
4
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1
answer
754
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1
answer
GTF to GFF conversion
htseq rna-seq written 10 months ago by karthick.n • 10 • updated 10 months ago by Juke34 • 4.8k
1
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2
answers
768
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2
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How can I normalise GDC TCGA HTSeq Count data (tumour only)
htseq tcga rna-seq normalisation counts written 11 months ago by joker33 • 20 • updated 11 months ago by mahmoud.s.fahmy • 0
0
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0
answers
278
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0
answers
HTSeq error about gene_id
htseq gene_id non-model written 11 months ago by felipead66 • 70
1
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1
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545
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1
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HTSeq pip installation in Ubuntu
htseq ubuntu written 11 months ago by felipead66 • 70 • updated 11 months ago by Mensur Dlakic • 7.0k
4
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1
answer
468
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1
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Error with HTseq RNAseq read count
htseq rna-seq written 14 months ago by Bioinfonext • 250 • updated 14 months ago by shawn.w.foley • 1.2k
4
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1
answer
1.0k
views
1
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How to quantify gene expression when stringtie considers two adjacent genes as single gene?
htseq stringtie deseq2 de rna-seq written 15 months ago by kousi31 • 30
7
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1
answer
604
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1
answer
see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 16 months ago by emilybowie2 • 0 • updated 16 months ago by h.mon ♦ 31k
9
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2
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523
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6 follow
2
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Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 16 months ago by alexis.groppi • 30
1
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1
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1.3k
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1
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STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq gene star isoform rsem written 16 months ago by jennygenome • 0 • updated 16 months ago by swbarnes2 ♦ 8.9k
0
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0
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457
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0
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Difficulty mapping Ribo-seq reads to annotated transcriptome features
htseq annotation alignment rna-seq ribo-seq written 16 months ago by jpcchoy • 0
2
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0
answers
332
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0
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Finding Ribo-seq reads in annotated UTRs
htseq ribo-seq utr alignment annotation written 16 months ago by jpcchoy • 0
3
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1
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575
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1
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Real-valued HTseq count to DESeq2
htseq deseq2 written 16 months ago by english.server • 210 • updated 16 months ago by Kevin Blighe ♦ 66k
0
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0
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1.7k
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0
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 18 months ago by Joel Wallenius • 70 • updated 17 months ago by Biostar ♦♦ 20
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