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<prev • 117 results • page 1 of 4 • next >
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HTSeq error: local variable 'NH' referenced before assignment
htseq tool rna-seq written 3 days ago by senowinski • 30 • updated 3 days ago by Devon Ryan ♦ 88k
2
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1
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107
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1
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HTseq code error repeatedly
htseq rna-seq written 5 days ago by bnayer26 • 0 • updated 4 days ago by genomax ♦ 62k
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1
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146
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how to get correlation between the counts over each gene at the same timepoint (two replicates)
htseq correlation rna-seq replication written 4 weeks ago by Lila M • 460 • updated 4 weeks ago by Nicolas Rosewick ♦ 7.3k
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274
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htseq-count SAM Processing error "can't decode byte 0xa7"
htseq rna-seq written 10 weeks ago by Glubbdrubb • 0
2
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1
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237
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1
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 10 weeks ago by hxlei613 • 80 • updated 10 weeks ago by Devon Ryan ♦ 88k
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2
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174
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5 follow
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counting number of genes located on positive or negative strands
gff3 htseq written 3 months ago by arsilan324 • 70 • updated 3 months ago by mike-zx • 130
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683
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7 follow
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How to input data for DESeq2 from individual HTSeq count?
htseq deseq2 deseq rna-seq written 4 months ago by sudu87 • 10 • updated 4 months ago by poojasethiya • 80
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159
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Generating read counts for my microRNA reads for a non model invertebrate
htseq small rna read count microrna written 4 months ago by karthic • 100
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1
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181
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1
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HTseq-counts not counting correctly?
htseq drosophila rna-seq written 4 months ago by vm.higareda • 20
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280
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RNA-seq High Variation Between and Within Groups
htseq tophat2 rna-seq written 5 months ago by jacobsen.jeremy • 40 • updated 5 months ago by h.mon ♦ 23k
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1
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442
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Should I include multi-mapped reads for analysis that does not require significant differential expression of genes?
htseq heatmap multi-mapped clustering rna-seq written 8 months ago by k.woolf • 0 • updated 6 months ago by Vincent Laufer • 1.0k
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1
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470
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calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 8 months ago by shenwei1376 • 0 • updated 8 months ago by Charles Warden ♦ 6.1k
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998
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htseq-count: error when reading beginning of SAM/BAM file.
htseq htseq-count rna-seq written 9 months ago by cgias • 0 • updated 9 months ago by h.mon ♦ 23k
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2
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259
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How reads are considered as mapped using samtools idxstats?
htseq idxstats samtools written 9 months ago by vijay lakhujani ♦ 3.6k • updated 9 months ago by Pierre Lindenbaum ♦ 116k
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320
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What to do with unpaired reads post-trimming?
de-novo htseq trimming metagenomic mapping written 9 months ago by willnotburn • 40
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355
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strand-specific metagene analysis
htseq strand-specific rna-seq metagene written 10 months ago by yuabrahamliu • 40
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535
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HTSeq not finding any features in mapped rnaseq file
htseq rna-seq written 10 months ago by AGC • 0 • updated 10 months ago by h.mon ♦ 23k
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303
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HTSeq-count ambiguous results - all transcripts vs. single transcript
htseq gene rna-seq written 11 months ago by oriolebaltimore • 60
7
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1
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1
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Error in extracting Counts from the bam file using htseq-count
htseq bam counts rna-seq written 12 months ago by Biologist • 130 • updated 12 months ago by h.mon ♦ 23k
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306
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Filter HT-Seq output for gene subclasses
htseq transcription factor rna-seq written 12 months ago by rbronste • 230
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317
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Estimate Fragment Size from Single End ChipSeq with (pysam, htseq lib or deeptools API)
htseq deeptools pysam written 12 months ago by ZheFrench • 190
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501
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Counting reads in CDS - but skipping few first/last codons
htseq rna-seq written 13 months ago by PocketChange • 0
6
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773
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What GTF file should I use in htseq?
htseq hisat rna-seq polyester written 13 months ago by statfa • 410 • updated 13 months ago by genomax ♦ 62k
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587
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HTSeq special counters occur at top and bottom of output file
htseq written 14 months ago by mccormack • 20
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5 follow
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 14 months ago by ThePresident • 100 • updated 14 months ago by WouterDeCoster ♦ 36k
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1
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1.1k
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1
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How to specify the sort based on name in samtools sort?
htseq bam samtools rna-seq sort written 14 months ago by anc.informatics • 0 • updated 14 months ago by finswimmer ♦ 9.8k
4
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1
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Why Warning: reads with missing mate encountered is occured in HTSeq?
htseq alignment sam rna-seq written 14 months ago by anc.informatics • 0 • updated 14 months ago by Martombo • 2.4k
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htseq-count error Feature does not contain a 'gene_id' attribute
htseq gff read count rna-seq written 15 months ago by madzayasodara • 10 • updated 15 months ago by WouterDeCoster ♦ 36k
1
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654
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HTSeq funny output
htseq quantification rna-seq written 15 months ago by --panda-- • 30
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772
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warning message after HTSeq
software error htseq rna-seq written 15 months ago by BioDH • 0
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