Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 150 results • page 1 of 5 • next >
1
vote
0
answers
74
views
0
answers
What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 4 days ago by Gabriel • 60
0
votes
0
answers
62
views
0
answers
HTSeq --nonunique all does not work
htseq --nonunique rna-seq written 24 days ago by rafaelsolersanblas • 0
7
votes
2
answers
11k
views
2
answers
Comparison Htseq And Feature Count
htseq written 6.0 years ago by HNK • 120 • updated 5 weeks ago by Biostar ♦♦ 20
9
votes
3
answers
5.5k
views
3
answers
htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 4.3 years ago by Gary • 480 • updated 9 weeks ago by Payal • 40
0
votes
0
answers
130
views
0
answers
Sequencing Strandedness and Differences in Expression Readouts Between stringtie and htseq
htseq stringtie expression rna-seq written 11 weeks ago by kmhum • 0
2
votes
1
answer
258
views
7 follow
1
answer
How to interpret the differences of read counts using htseq and feature counts?
htseq next-gen featurecounts rna-seq written 11 weeks ago by 2822462298 • 50 • updated 11 weeks ago by michael.ante • 3.6k
2
votes
0
answers
106
views
0
answers
optimise htseq count performance by choosing proper samtools sort options
htseq rna samtools rna-seq written 11 weeks ago by 2822462298 • 50
0
votes
0
answers
134
views
0
answers
HTSeq output Gene format unfamiliar
htseq gene name rna-seq written 3 months ago by j.lye • 0
0
votes
0
answers
108
views
0
answers
HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
htseq rna-seq written 3 months ago by sbrashidx • 0
8
votes
1
answer
4.2k
views
1
answer
HTSeq error when reading BAM file
htseq rna-seq written 3.5 years ago by Mike • 1.5k • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
125
views
0
answers
'HTSeq._HTSeq.GenomicInterval' object has no attribute 'xrange'
htseq python rna-seq written 5 months ago by zhangdengwei • 60 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
174
views
1
answer
GTF to GFF conversion
htseq rna-seq written 4 months ago by karthick.n • 10 • updated 4 months ago by Juke-34 • 3.7k
1
vote
2
answers
340
views
2
answers
How can I normalise GDC TCGA HTSeq Count data (tumour only)
htseq tcga rna-seq normalisation counts written 4 months ago by joker33 • 0 • updated 4 months ago by mahmoud.s.fahmy • 0
0
votes
0
answers
166
views
0
answers
HTSeq error about gene_id
htseq gene_id non-model written 4 months ago by felipead66 • 50
1
vote
1
answer
236
views
1
answer
HTSeq pip installation in Ubuntu
htseq ubuntu written 4 months ago by felipead66 • 50 • updated 4 months ago by Mensur Dlakic • 4.2k
4
votes
1
answer
300
views
1
answer
Error with HTseq RNAseq read count
htseq rna-seq written 7 months ago by Bioinfonext • 200 • updated 7 months ago by shawn.w.foley • 1.2k
4
votes
1
answer
554
views
1
answer
How to quantify gene expression when stringtie considers two adjacent genes as single gene?
htseq stringtie deseq2 de rna-seq written 8 months ago by kousi31 • 10
7
votes
1
answer
394
views
1
answer
see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 9 months ago by emilybowie2 • 0 • updated 9 months ago by h.mon ♦ 29k
9
votes
2
answers
362
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 9 months ago by alexis.groppi • 30
1
vote
1
answer
670
views
1
answer
STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq gene star isoform rsem written 9 months ago by jennygenome • 0 • updated 9 months ago by swbarnes2 ♦ 7.5k
0
votes
0
answers
289
views
0
answers
Difficulty mapping Ribo-seq reads to annotated transcriptome features
htseq annotation alignment rna-seq ribo-seq written 9 months ago by jpcchoy • 0
2
votes
0
answers
244
views
0
answers
Finding Ribo-seq reads in annotated UTRs
htseq ribo-seq utr alignment annotation written 9 months ago by jpcchoy • 0
3
votes
1
answer
348
views
1
answer
Real-valued HTseq count to DESeq2
htseq deseq2 written 10 months ago by english.server • 200 • updated 10 months ago by Kevin Blighe ♦ 56k
0
votes
0
answers
986
views
0
answers
Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 11 months ago by Joel Wallenius • 70 • updated 10 months ago by Biostar ♦♦ 20
3
votes
2
answers
363
views
2
answers
HTSeq installation problem
htseq windows written 10 months ago by cyberfofana • 0 • updated 10 months ago by Devon Ryan ♦ 94k
2
votes
1
answer
1.7k
views
1
answer
HtSeq installation error
htseq dexseq rna-seq written 2.9 years ago by BM • 40 • updated 10 months ago by ATpoint ♦ 32k
5
votes
3
answers
463
views
3
answers
Should I keep all HTSeq table informations for edgeR analysis?
htseq rnaseq edger written 10 months ago by silas008 • 100 • updated 10 months ago by SMK • 1.9k
0
votes
2
answers
423
views
5 follow
2
answers
Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 12 months ago by BM • 40 • updated 12 months ago by Juke-34 • 3.7k
3
votes
0
answers
649
views
0
answers
HTSeq & featureCounts show no features
htseq alignment featurecounts rna-seq written 12 months ago by bkinzep • 0 • updated 12 months ago by h.mon ♦ 29k
9
votes
2
answers
9.8k
views
11 follow
2
answers
Calculating FPKM after htseq-count
htseq fpkm rna-seq written 3.1 years ago by Fill • 70 • updated 12 months ago by Ahmed Alhendi • 40
<prev • 150 results • page 1 of 5 • next >
Recent Votes
Recent Locations • All »
  • United States, 3 minutes ago
  • WCIP | Glasgow | UK, 3 minutes ago
  • Durgapur, West Bengal, 4 minutes ago
  • Seattle, WA USA, 7 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 785 users visited in the last hour