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<prev • 157 results • page 1 of 6 • next >
3
votes
1
answer
40
views
1
answer
STAR --quantMode GeneCounts vs HTSeq-count
htseq next-gen star rna-seq sequencing written 7 hours ago by Uday Rangaswamy • 150 • updated 7 hours ago by h.mon ♦ 32k
2
votes
1
answer
91
views
1
answer
Does HTSEQ output include non-coding genes also?
htseq rnaseq ngs c.elegans worms written 28 days ago by s.singh • 20 • updated 28 days ago by WouterDeCoster ♦ 45k
1
vote
1
answer
130
views
1
answer
htseq-count without GTF?
htseq count fpkm htseq-count gtf written 12 weeks ago by blur • 150 • updated 12 weeks ago by ATpoint ♦ 44k
0
votes
1
answer
1.3k
views
1
answer
GAPDH missing from htseq-counts file
htseq gapdh nonunique written 3.2 years ago by melia_g • 0 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
159
views
1
answer
HTseq feature count handling of transcripts with shared exons?
htseq rna-seq dge written 4 months ago by dk0319 • 20 • updated 4 months ago by i.sudbery ♦ 10k
0
votes
0
answers
132
views
0
answers
Problem with writing reads with HTSeq.BAM_Writer
htseq bam_writer written 4 months ago by daria.d.kozhevnikova • 0 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
184
views
0
answers
htseq-count with bam file not working
htseq written 5 months ago by Amaranta_Remedios • 0
0
votes
0
answers
273
views
0
answers
DESeq DataSet from HTSeqCount Error
htseq galaxy rna-seq written 6 months ago by mahejabeen.nidhi • 10
1
vote
0
answers
346
views
0
answers
What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 9 months ago by Gabriel • 90
0
votes
0
answers
225
views
0
answers
HTSeq --nonunique all does not work
htseq --nonunique rna-seq written 10 months ago by rafaelsolersanblas • 20
7
votes
2
answers
13k
views
2
answers
Comparison Htseq And Feature Count
htseq written 6.8 years ago by HNK • 140 • updated 10 months ago by Biostar ♦♦ 20
10
votes
3
answers
6.2k
views
3
answers
htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 5.1 years ago by Gary • 480 • updated 11 months ago by Payal • 100
0
votes
0
answers
377
views
0
answers
Sequencing Strandedness and Differences in Expression Readouts Between stringtie and htseq
htseq stringtie expression rna-seq written 12 months ago by kmhum • 0
2
votes
1
answer
652
views
7 follow
1
answer
How to interpret the differences of read counts using htseq and feature counts?
htseq next-gen featurecounts rna-seq written 12 months ago by 2822462298 • 50 • updated 12 months ago by michael.ante • 3.6k
2
votes
0
answers
354
views
0
answers
optimise htseq count performance by choosing proper samtools sort options
htseq rna samtools rna-seq written 12 months ago by 2822462298 • 50
0
votes
0
answers
235
views
0
answers
HTSeq output Gene format unfamiliar
htseq gene name rna-seq written 12 months ago by omicsnstuff • 0
0
votes
0
answers
263
views
0
answers
HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
htseq rna-seq written 12 months ago by sbrashidx • 0
8
votes
1
answer
4.7k
views
1
answer
HTSeq error when reading BAM file
htseq rna-seq written 4.3 years ago by Mike • 1.7k • updated 13 months ago by Biostar ♦♦ 20
0
votes
0
answers
218
views
0
answers
'HTSeq._HTSeq.GenomicInterval' object has no attribute 'xrange'
htseq python rna-seq written 14 months ago by zhangdengwei • 130 • updated 13 months ago by Biostar ♦♦ 20
4
votes
1
answer
969
views
1
answer
GTF to GFF conversion
htseq rna-seq written 13 months ago by karthick.n • 10 • updated 13 months ago by Juke34 • 4.9k
1
vote
2
answers
955
views
2
answers
How can I normalise GDC TCGA HTSeq Count data (tumour only)
htseq tcga rna-seq normalisation counts written 13 months ago by joker33 • 20 • updated 13 months ago by mahmoud.s.fahmy • 0
0
votes
0
answers
336
views
0
answers
HTSeq error about gene_id
htseq gene_id non-model written 13 months ago by felipead66 • 80
1
vote
1
answer
726
views
1
answer
HTSeq pip installation in Ubuntu
htseq ubuntu written 13 months ago by felipead66 • 80 • updated 13 months ago by Mensur Dlakic • 8.1k
4
votes
1
answer
546
views
1
answer
Error with HTseq RNAseq read count
htseq rna-seq written 16 months ago by Bioinfonext • 320 • updated 16 months ago by shawn.w.foley • 1.2k
4
votes
1
answer
1.3k
views
1
answer
How to quantify gene expression when stringtie considers two adjacent genes as single gene?
htseq stringtie deseq2 de rna-seq written 18 months ago by kousi31 • 30
7
votes
1
answer
722
views
1
answer
see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 19 months ago by emilybowie2 • 0 • updated 19 months ago by h.mon ♦ 32k
9
votes
2
answers
590
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 19 months ago by alexis.groppi • 30
1
vote
1
answer
1.5k
views
1
answer
STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq gene star isoform rsem written 19 months ago by jennygenome • 0 • updated 19 months ago by swbarnes2 ♦ 9.3k
0
votes
0
answers
530
views
0
answers
Difficulty mapping Ribo-seq reads to annotated transcriptome features
htseq annotation alignment rna-seq ribo-seq written 19 months ago by jpcchoy • 0
2
votes
0
answers
381
views
0
answers
Finding Ribo-seq reads in annotated UTRs
htseq ribo-seq utr alignment annotation written 19 months ago by jpcchoy • 0
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