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<prev • 139 results • page 1 of 5 • next >
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'HTSeq._HTSeq.GenomicInterval' object has no attribute 'xrange'
htseq python rna-seq written 22 days ago by zhangdengwei • 40
6
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2
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11k
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2
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Comparison Htseq And Feature Count
htseq written 5.7 years ago by HNK • 120 • updated 7 weeks ago by ATpoint ♦ 26k
4
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1
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193
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1
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Error with HTseq RNAseq read count
htseq rna-seq written 11 weeks ago by Bioinfonext • 170 • updated 11 weeks ago by shawn.w.foley • 1.1k
4
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1
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303
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1
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How to quantify gene expression when stringtie considers two adjacent genes as single gene?
htseq stringtie deseq2 de rna-seq written 4 months ago by kousi31 • 0
7
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1
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269
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1
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see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 5 months ago by emilybowie2 • 0 • updated 4 months ago by h.mon ♦ 28k
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2
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257
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6 follow
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Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 5 months ago by alexis.groppi • 30
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1
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399
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1
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STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq gene star isoform rsem written 5 months ago by jennygenome • 0 • updated 5 months ago by swbarnes2 ♦ 7.0k
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187
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Difficulty mapping Ribo-seq reads to annotated transcriptome features
htseq annotation alignment rna-seq ribo-seq written 5 months ago by jpcchoy • 0
2
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187
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Finding Ribo-seq reads in annotated UTRs
htseq ribo-seq utr alignment annotation written 5 months ago by jpcchoy • 0
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1
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228
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1
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Real-valued HTseq count to DESeq2
htseq deseq2 written 5 months ago by english.server • 160 • updated 5 months ago by Kevin Blighe ♦ 51k
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583
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 7 months ago by Joel Wallenius • 70 • updated 5 months ago by Biostar ♦♦ 20
3
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2
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222
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2
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HTSeq installation problem
htseq windows written 6 months ago by cyberfofana • 0 • updated 6 months ago by Devon Ryan ♦ 92k
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1
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1.6k
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1
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HtSeq installation error
htseq dexseq rna-seq written 2.6 years ago by BM • 40 • updated 6 months ago by ATpoint ♦ 26k
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3
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313
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3
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Should I keep all HTSeq table informations for edgeR analysis?
htseq rnaseq edger written 6 months ago by silas008 • 100 • updated 6 months ago by SMK • 1.9k
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2
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316
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5 follow
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 7 months ago by BM • 40 • updated 7 months ago by Juke-34 • 2.9k
3
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0
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460
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HTSeq & featureCounts show no features
htseq alignment featurecounts rna-seq written 8 months ago by bkinzep • 0 • updated 8 months ago by h.mon ♦ 28k
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2
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11 follow
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Calculating FPKM after htseq-count
htseq fpkm rna-seq written 2.7 years ago by Fill • 70 • updated 8 months ago by Ahmed Alhendi • 30
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308
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Low HTseq Feature Counts in Subset of RNA-seq Samples
htseq rnaseq feature counts alignment written 8 months ago by kmyers2 • 30
5
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268
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0
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Converting this matrix to gene name or symbole
htseq ensembl id rna-seq written 8 months ago by A • 3.6k
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1
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320
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1
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Human genome annotation
htseq rna-seq written 8 months ago by justinkablan225 • 10
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515
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How to get gene counts with HTseq
reads htseq counts rna-seq written 8 months ago by Michel Edwar • 70
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1
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266
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1
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STAR and HTSeq command line parameters for 3' mRNA-Seq data
htseq next-gen star rna-seq sequencing written 8 months ago by Ld_60 • 30 • updated 8 months ago by michael.ante • 3.5k
3
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2
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404
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2
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Error upon running HTseq with paired end aligned BAM (coordinate sorted) files
htseq rnaseq written 8 months ago by bnayer26 • 0 • updated 8 months ago by h.mon ♦ 28k
3
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0
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367
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0
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Why my HTseq result is all no_feature.
htseq bwa-mem rna-seq written 8 months ago by guotingfeng • 10 • updated 8 months ago by genomax ♦ 74k
2
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1
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560
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1
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Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not aligned.
htseq alignment rna-seq hisat2 written 8 months ago by guotingfeng • 10 • updated 8 months ago by genomax ♦ 74k
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1
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301
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1
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HTSeq error: local variable 'NH' referenced before assignment
htseq tool rna-seq written 9 months ago by senowinski • 30 • updated 9 months ago by Devon Ryan ♦ 92k
7
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1
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428
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1
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HTseq code error repeatedly
htseq rna-seq written 9 months ago by bnayer26 • 0 • updated 9 months ago by genomax ♦ 74k
16
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1
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394
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1
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how to get correlation between the counts over each gene at the same timepoint (two replicates)
htseq correlation rna-seq replication written 10 months ago by Lila M • 800 • updated 10 months ago by Nicolas Rosewick ♦ 8.4k
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1
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641
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1
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htseq-count SAM Processing error "can't decode byte 0xa7"
htseq rna-seq written 11 months ago by Glubbdrubb • 0
2
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1
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625
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1
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 11 months ago by hxlei613 • 90 • updated 11 months ago by Devon Ryan ♦ 92k
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