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<prev • 128 results • page 1 of 5 • next >
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 9 days ago by Joel Wallenius • 10
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2
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127
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5 follow
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 21 days ago by BM • 40 • updated 21 days ago by Juke-34 • 2.1k
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241
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HTSeq & featureCounts show no features
htseq alignment featurecounts rna-seq written 4 weeks ago by bkinzep • 0 • updated 4 weeks ago by h.mon ♦ 24k
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11 follow
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Calculating FPKM after htseq-count
htseq fpkm rna-seq written 2.2 years ago by Fill • 70 • updated 4 weeks ago by Ahmed Alhendi • 10
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111
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Low HTseq Feature Counts in Subset of RNA-seq Samples
htseq rnaseq feature counts alignment written 5 weeks ago by kmyers2 • 20
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151
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Converting this matrix to gene name or symbole
htseq ensembl id rna-seq written 5 weeks ago by F • 3.4k
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1
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146
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1
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Human genome annotation
htseq rna-seq written 5 weeks ago by justinkablan225 • 0
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141
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How to get gene counts with HTseq
reads htseq counts rna-seq written 5 weeks ago by Michel Edwar • 70
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125
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1
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STAR and HTSeq command line parameters for 3' mRNA-Seq data
htseq next-gen star rna-seq sequencing written 7 weeks ago by Ld_60 • 30 • updated 7 weeks ago by michael.ante • 3.2k
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2
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206
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Error upon running HTseq with paired end aligned BAM (coordinate sorted) files
htseq rnaseq written 7 weeks ago by bnayer26 • 0 • updated 7 weeks ago by h.mon ♦ 24k
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197
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Why my HTseq result is all no_feature.
htseq bwa-mem rna-seq written 8 weeks ago by guotingfeng • 10 • updated 8 weeks ago by genomax ♦ 65k
2
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1
answer
198
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1
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Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not aligned.
htseq alignment rna-seq hisat2 written 8 weeks ago by guotingfeng • 10 • updated 8 weeks ago by genomax ♦ 65k
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138
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HTSeq error: local variable 'NH' referenced before assignment
htseq tool rna-seq written 10 weeks ago by senowinski • 30 • updated 10 weeks ago by Devon Ryan ♦ 89k
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1
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244
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1
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HTseq code error repeatedly
htseq rna-seq written 10 weeks ago by bnayer26 • 0 • updated 10 weeks ago by genomax ♦ 65k
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1
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224
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1
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how to get correlation between the counts over each gene at the same timepoint (two replicates)
htseq correlation rna-seq replication written 3 months ago by Lila M • 470 • updated 3 months ago by Nicolas Rosewick ♦ 7.5k
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1
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391
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1
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htseq-count SAM Processing error "can't decode byte 0xa7"
htseq rna-seq written 4 months ago by Glubbdrubb • 0
2
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1
answer
358
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1
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 4 months ago by hxlei613 • 80 • updated 4 months ago by Devon Ryan ♦ 89k
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2
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222
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5 follow
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counting number of genes located on positive or negative strands
gff3 htseq written 5 months ago by arsilan324 • 70 • updated 5 months ago by mike-zx • 140
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7 follow
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How to input data for DESeq2 from individual HTSeq count?
htseq deseq2 deseq rna-seq written 6 months ago by sudu87 • 10 • updated 6 months ago by poojasethiya • 80
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217
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Generating read counts for my microRNA reads for a non model invertebrate
htseq small rna read count microrna written 6 months ago by karthic • 100
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1
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230
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1
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HTseq-counts not counting correctly?
htseq drosophila rna-seq written 6 months ago by vm.higareda • 20
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318
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RNA-seq High Variation Between and Within Groups
htseq tophat2 rna-seq written 8 months ago by jacobsen.jeremy • 40 • updated 8 months ago by h.mon ♦ 24k
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1
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597
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1
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Should I include multi-mapped reads for analysis that does not require significant differential expression of genes?
htseq heatmap multi-mapped clustering rna-seq written 10 months ago by k.woolf • 0 • updated 8 months ago by Vincent Laufer • 1.0k
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1
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571
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calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 10 months ago by shenwei1376 • 0 • updated 10 months ago by Charles Warden ♦ 6.6k
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1
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1.3k
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1
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htseq-count: error when reading beginning of SAM/BAM file.
htseq htseq-count rna-seq written 11 months ago by cgias • 0 • updated 11 months ago by h.mon ♦ 24k
2
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2
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297
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2
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How reads are considered as mapped using samtools idxstats?
htseq idxstats samtools written 11 months ago by Vijay Lakhujani ♦ 4.0k • updated 11 months ago by Pierre Lindenbaum ♦ 119k
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396
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What to do with unpaired reads post-trimming?
de-novo htseq trimming metagenomic mapping written 12 months ago by willnotburn • 40
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436
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strand-specific metagene analysis
htseq strand-specific rna-seq metagene written 13 months ago by yuabrahamliu • 40
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1
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1
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HTSeq not finding any features in mapped rnaseq file
htseq rna-seq written 13 months ago by AGC • 0 • updated 13 months ago by h.mon ♦ 24k
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366
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0
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HTSeq-count ambiguous results - all transcripts vs. single transcript
htseq gene rna-seq written 13 months ago by oriolebaltimore • 60
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