Showing: htseqreset
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 6 weeks ago by hxlei61380 • updated 6 weeks ago by Devon Ryan87k
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counting number of genes located on positive or negative strands
gff3 htseq written 11 weeks ago by arsilan32460 • updated 11 weeks ago by mike-zx110
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How to input data for DESeq2 from individual HTSeq count?
htseq deseq2 deseq rna-seq written 3 months ago by sudu8710 • updated 3 months ago by poojasethiya80
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RNA-seq High Variation Between and Within Groups
htseq tophat2 rna-seq written 4 months ago by jacobsen.jeremy40 • updated 4 months ago by h.mon22k
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calculating the fpkm from htseq counts
htseq R fpkm rna-seq written 7 months ago by shenwei13760 • updated 7 months ago by Charles Warden5.9k
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htseq-count: error when reading beginning of SAM/BAM file.
htseq htseq-count rna-seq written 8 months ago by cgias0 • updated 8 months ago by h.mon22k
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How reads are considered as mapped using samtools idxstats?
htseq idxstats samtools written 8 months ago by Vijay Lakhujani3.5k • updated 8 months ago by Pierre Lindenbaum116k
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HTSeq not finding any features in mapped rnaseq file
htseq rna-seq written 10 months ago by AGC0 • updated 10 months ago by h.mon22k
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Error in extracting Counts from the bam file using htseq-count
htseq bam counts rna-seq written 11 months ago by Biologist120 • updated 11 months ago by h.mon22k
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What GTF file should I use in htseq?
htseq hisat rna-seq polyester written 13 months ago by statfa410 • updated 13 months ago by genomax60k
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 13 months ago by ThePresident100 • updated 13 months ago by WouterDeCoster36k
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How to specify the sort based on name in samtools sort?
htseq bam samtools rna-seq sort written 13 months ago by anc.informatics0 • updated 13 months ago by finswimmer8.9k
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HTSeq funny output
htseq quantification rna-seq written 14 months ago by --panda--30
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htseq ignores contiges with zero reads
htseq written 15 months ago by statfa410
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