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<prev • 152 results • page 1 of 6 • next >
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72
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htseq-count with bam file not working
htseq written 8 days ago by Amaranta_Remedios • 0
0
votes
0
answers
106
views
0
answers
DESeq DataSet from HTSeqCount Error
htseq galaxy rna-seq written 6 weeks ago by mahejabeen.nidhi • 10
1
vote
0
answers
229
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0
answers
What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 4 months ago by Gabriel • 60
0
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0
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142
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0
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HTSeq --nonunique all does not work
htseq --nonunique rna-seq written 5 months ago by rafaelsolersanblas • 0
7
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2
answers
12k
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2
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Comparison Htseq And Feature Count
htseq written 6.4 years ago by HNK • 130 • updated 5 months ago by Biostar ♦♦ 20
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3
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5.8k
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3
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htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 4.6 years ago by Gary • 480 • updated 6 months ago by Payal • 90
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0
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251
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0
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Sequencing Strandedness and Differences in Expression Readouts Between stringtie and htseq
htseq stringtie expression rna-seq written 6 months ago by kmhum • 0
2
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1
answer
412
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7 follow
1
answer
How to interpret the differences of read counts using htseq and feature counts?
htseq next-gen featurecounts rna-seq written 6 months ago by 2822462298 • 50 • updated 6 months ago by michael.ante • 3.6k
2
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0
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174
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optimise htseq count performance by choosing proper samtools sort options
htseq rna samtools rna-seq written 6 months ago by 2822462298 • 50
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0
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178
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0
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HTSeq output Gene format unfamiliar
htseq gene name rna-seq written 7 months ago by omicsnstuff • 0
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186
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0
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HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
htseq rna-seq written 7 months ago by sbrashidx • 0
8
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1
answer
4.4k
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1
answer
HTSeq error when reading BAM file
htseq rna-seq written 3.9 years ago by Mike • 1.6k • updated 7 months ago by Biostar ♦♦ 20
0
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173
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0
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'HTSeq._HTSeq.GenomicInterval' object has no attribute 'xrange'
htseq python rna-seq written 9 months ago by zhangdengwei • 70 • updated 8 months ago by Biostar ♦♦ 20
4
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1
answer
505
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1
answer
GTF to GFF conversion
htseq rna-seq written 8 months ago by karthick.n • 10 • updated 8 months ago by Juke34 • 4.5k
1
vote
2
answers
580
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2
answers
How can I normalise GDC TCGA HTSeq Count data (tumour only)
htseq tcga rna-seq normalisation counts written 8 months ago by joker33 • 0 • updated 8 months ago by mahmoud.s.fahmy • 0
0
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0
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239
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0
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HTSeq error about gene_id
htseq gene_id non-model written 8 months ago by felipead66 • 70
1
vote
1
answer
418
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1
answer
HTSeq pip installation in Ubuntu
htseq ubuntu written 8 months ago by felipead66 • 70 • updated 8 months ago by Mensur Dlakic • 6.0k
4
votes
1
answer
395
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1
answer
Error with HTseq RNAseq read count
htseq rna-seq written 11 months ago by Bioinfonext • 220 • updated 11 months ago by shawn.w.foley • 1.2k
4
votes
1
answer
846
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1
answer
How to quantify gene expression when stringtie considers two adjacent genes as single gene?
htseq stringtie deseq2 de rna-seq written 12 months ago by kousi31 • 10
7
votes
1
answer
520
views
1
answer
see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 14 months ago by emilybowie2 • 0 • updated 13 months ago by h.mon ♦ 30k
9
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2
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470
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6 follow
2
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Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 13 months ago by alexis.groppi • 30
1
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1
answer
1.0k
views
1
answer
STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq gene star isoform rsem written 14 months ago by jennygenome • 0 • updated 14 months ago by swbarnes2 ♦ 8.1k
0
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0
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397
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0
answers
Difficulty mapping Ribo-seq reads to annotated transcriptome features
htseq annotation alignment rna-seq ribo-seq written 14 months ago by jpcchoy • 0
2
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0
answers
307
views
0
answers
Finding Ribo-seq reads in annotated UTRs
htseq ribo-seq utr alignment annotation written 14 months ago by jpcchoy • 0
3
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1
answer
477
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1
answer
Real-valued HTseq count to DESeq2
htseq deseq2 written 14 months ago by english.server • 210 • updated 14 months ago by Kevin Blighe ♦ 63k
0
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0
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1.4k
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0
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 16 months ago by Joel Wallenius • 70 • updated 14 months ago by Biostar ♦♦ 20
3
votes
2
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475
views
2
answers
HTSeq installation problem
htseq windows written 14 months ago by cyberfofana • 0 • updated 14 months ago by Devon Ryan ♦ 96k
2
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1
answer
1.9k
views
1
answer
HtSeq installation error
htseq dexseq rna-seq written 3.3 years ago by BM • 60 • updated 14 months ago by ATpoint ♦ 36k
5
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3
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673
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3
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Should I keep all HTSeq table informations for edgeR analysis?
htseq rnaseq edger written 15 months ago by silas008 • 130 • updated 15 months ago by SMK • 1.9k
0
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2
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508
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5 follow
2
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 16 months ago by BM • 60 • updated 16 months ago by Juke34 • 4.5k
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