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Pindel installation failing due to htslib
htslib docker pindel written 9 months ago by cdastmalchi0 • updated 7 months ago by steve2.6k
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Resources to learn htslib and C/C++
c++ C htslib written 3.8 years ago by QVINTVS_FABIVS_MAXIMVS2.4k • updated 16 months ago by chernouhov sergey50
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Bcftools merge sample order
vcf dna bcftools multisample htslib written 22 months ago by Chadi Saad80 • updated 22 months ago by paolo002160
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Can I read chrom, strand, pos, len from bam files without htslib?
htslib written 23 months ago by Click downvote690 • updated 23 months ago by benformatics1.9k
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Minimal example of using htslib from conda to build a simple c file?
C conda htslib written 23 months ago by Click downvote690 • updated 23 months ago by John Marshall2.1k
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How do I get the strand of a read when using htslib?
htslib written 23 months ago by Click downvote690 • updated 23 months ago by Alex Reynolds30k
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GNU autotools and samtools/htslib
samtools configure C autotools htslib written 24 months ago by Pierre Lindenbaum130k • updated 24 months ago by John Marshall2.1k
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Pindel during compile : pindel.h:35:24: error: htslib/sam.h: No such file or directory
pindel htslib written 3.0 years ago by johnnytam100100 • updated 2.9 years ago by Biostar ♦♦ 20
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Tool: CuteVcf : A Qt application to view VCF file
gui vcf qt htslib tabix tool written 3.8 years ago by sacha1.9k
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Splitting SAM/BAM alignments
cigar bam sam htslib written 3.8 years ago by Zev.Kronenberg11k • updated 3.8 years ago by Pierre Lindenbaum130k
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Is there any C API documentation for HTSLIB?
api bam doc htslib written 3.9 years ago by chen2.1k • updated 3.9 years ago by Devon Ryan96k
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News: Samtools/htslib/bcftools 1-3 released
samtools news bcftools htslib written 4.8 years ago by Devon Ryan96k • updated 4.0 years ago by xing10
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C++ how to read VCF file in indexed bgzip format?
bgzip samtools bcftools vcftools htslib written 4.4 years ago by Chen1.0k • updated 4.4 years ago by rudy.d.arthur20
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Perl API for latest version of Tabix (now part of HTSlib)?
tabix htslib written 5.2 years ago by Christian2.9k • updated 4.4 years ago by ayates60
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Reading CRAM files in pysam
python htslib samtools pysam cram written 4.8 years ago by QVINTVS_FABIVS_MAXIMVS2.4k • updated 4.7 years ago by duxan50
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htslib C API: getting reads from region
C api samtools htslib written 5.2 years ago by QVINTVS_FABIVS_MAXIMVS2.4k • updated 5.2 years ago by Pierre Lindenbaum130k
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[HTSlib] cannot find htscmd
htslib written 5.4 years ago by adny50 • updated 5.4 years ago by Devon Ryan96k
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News: Samtools/htslib v1.2 released
samtools news bcftools htslib written 5.6 years ago by Devon Ryan96k
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Converting BAM to Fastq with HTSlib htscmd
tophat bam fastq bam2fastq htslib written 6.1 years ago by trakhtenberg150 • updated 5.9 years ago by piet1.8k
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News: Samtools/htslib/bcftools 1.1 released
news samtools htslib written 6.0 years ago by Devon Ryan96k
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meaning of new symbols in samtools mpileup format?
samtools snp pileup htslib written 6.1 years ago by Dejian1.3k • updated 6.1 years ago by Devon Ryan96k
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