Showing: htslibreset
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35
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21 follow
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problem while Installing BCFtools/htslib
installation bcftools htslib written 5.2 years ago by always_learning980 • updated 5.1 years ago by 141341254653464453.5k
6
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1
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4.4k
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1
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htslib C API: getting reads from region
C api samtools htslib written 4.2 years ago by QVINTVS_FABIVS_MAXIMVS2.3k • updated 4.2 years ago by Pierre Lindenbaum122k
0
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2
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3.2k
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2
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Converting BAM to Fastq with HTSlib htscmd
tophat bam fastq bam2fastq htslib written 5.0 years ago by trakhtenberg150 • updated 4.9 years ago by piet1.7k
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3.2k
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1
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News: Samtools/htslib/bcftools 1-3 released
samtools news bcftools htslib written 3.8 years ago by Devon Ryan91k • updated 3.0 years ago by xing10
3
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1
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2.9k
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1
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meaning of new symbols in samtools mpileup format?
samtools snp pileup htslib written 5.1 years ago by Dejian1.3k • updated 5.1 years ago by Devon Ryan91k
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2.5k
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1
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4
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2
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2.5k
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2
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C++ how to read VCF file in indexed bgzip format?
bgzip samtools bcftools vcftools htslib written 3.4 years ago by Chen910 • updated 3.4 years ago by rudy.d.arthur20
3
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1
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2.5k
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1
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Is there any C API documentation for HTSLIB?
api bam doc htslib written 2.9 years ago by chen1.9k • updated 2.9 years ago by Devon Ryan91k
3
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2.4k
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1
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[HTSlib] cannot find htscmd
htslib written 4.4 years ago by szuszmok40 • updated 4.4 years ago by Devon Ryan91k
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3
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3
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Reading CRAM files in pysam
python htslib samtools pysam cram written 3.8 years ago by QVINTVS_FABIVS_MAXIMVS2.3k • updated 3.7 years ago by duxan50
3
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0
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1.5k
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0
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News: Samtools/htslib/bcftools 1.1 released
news samtools htslib written 5.0 years ago by Devon Ryan91k
5
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1
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8 follow
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Resources to learn htslib and C/C++
c++ C htslib written 2.8 years ago by QVINTVS_FABIVS_MAXIMVS2.3k • updated 3 months ago by chernouhov10
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1
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Tool: CuteVcf : A Qt application to view VCF file
gui vcf qt htslib tabix tool written 2.7 years ago by sacha1.8k
3
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1
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1.4k
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1
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Perl API for latest version of Tabix (now part of HTSlib)?
tabix htslib written 4.2 years ago by Christian2.8k • updated 3.4 years ago by ayates60
3
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0
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1.3k
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0
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News: Samtools/htslib v1.2 released
samtools news bcftools htslib written 4.6 years ago by Devon Ryan91k
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Pindel during compile : pindel.h:35:24: error: htslib/sam.h: No such file or directory
pindel htslib written 2.0 years ago by johnnytam100100 • updated 22 months ago by Biostar ♦♦ 20
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2
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8
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1
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1.1k
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1
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Splitting SAM/BAM alignments
cigar bam sam htslib written 2.8 years ago by Zev.Kronenberg11k • updated 2.8 years ago by Pierre Lindenbaum122k
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4
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5 follow
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8
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5 follow
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Minimal example of using htslib from conda to build a simple c file?
C conda htslib written 10 months ago by Click downvote670 • updated 10 months ago by John Marshall1.7k
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1
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511
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Bcftools merge sample order
vcf dna bcftools multisample htslib written 10 months ago by Chadi Saad60 • updated 10 months ago by paolo002150
3
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1
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460
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1
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GNU autotools and samtools/htslib
samtools configure C autotools htslib written 11 months ago by Pierre Lindenbaum122k • updated 11 months ago by John Marshall1.7k
5
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2
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438
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8 follow
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Can I read chrom, strand, pos, len from bam files without htslib?
htslib written 11 months ago by Click downvote670 • updated 10 months ago by benformatics1.1k
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How do I get the strand of a read when using htslib?
htslib written 11 months ago by Click downvote670 • updated 11 months ago by Alex Reynolds28k
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304
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