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10
votes
6
answers
5.9k
views
7 follow
6
answers
Genome Browser Figure
genome visualization igv written 8.2 years ago by Egl • 10 • updated 19 hours ago by bernatgel • 2.2k
0
votes
1
answer
54
views
1
answer
IGV Fasta Error: Uneven Line Lengths
genome igv written 1 day ago by eds35016 • 0
0
votes
0
answers
58
views
0
answers
Hide small indels from PacBio long read sequencing on IGV
pacbio igv written 3 days ago by jan • 120
15
votes
0
answers
3.3k
views
9 follow
0
answers
Tool: Automatic IGV snapshot script
tutorial chip-seq tool igv written 2.7 years ago by steve • 2.4k • updated 7 days ago by danielaperry2015 • 0
2
votes
2
answers
106
views
2
answers
Visualizations of chimeric connections in different chromosomes
assembly igv inter-chromosomal chimeric junction written 23 days ago by lucas.caue.jacintho • 20 • updated 14 days ago by Vitis • 2.3k
2
votes
1
answer
87
views
1
answer
how to visualize rna-seq coverage track in igv?
normalization bam coverage rna-seq igv written 20 days ago by Zee_S • 50 • updated 20 days ago by jared.andrews07 • 4.0k
0
votes
1
answer
63
views
1
answer
bedtools genomecov per-base report in igv
bedtools per-base report igv written 4 weeks ago by pyKey • 50 • updated 4 weeks ago by ATpoint ♦ 26k
6
votes
1
answer
127
views
1
answer
IGV crashing on Mac
java macos igv written 5 weeks ago by Marco.Milanesi • 0 • updated 5 weeks ago by 27atcggcta27 • 150
1
vote
1
answer
648
views
5 follow
1
answer
loaded a sorted bam file in IGV but I can't see anything
assembly bam igv written 13 months ago by saadleeshehreen • 70 • updated 5 weeks ago by Biostar ♦♦ 20
3
votes
2
answers
157
views
2
answers
Is it possible to run IGV in batch mode without opening the GUI?
next-gen alignment igv written 6 weeks ago by elcortegano • 10 • updated 6 weeks ago by steve • 2.4k
0
votes
0
answers
105
views
0
answers
IGV create genome: cytoband not working
rna-seq igv written 7 weeks ago by NathL • 10
1
vote
0
answers
193
views
0
answers
Error when trying to run IGV on server
igv written 9 weeks ago by kristina.mahan • 50
0
votes
1
answer
615
views
1
answer
Error of SAMSequenceDictionary
samtools sam igv written 18 months ago by niu.shengyong • 50 • updated 10 weeks ago by Biostar ♦♦ 20
4
votes
0
answers
694
views
0
answers
Hidden reads in IGV
read quality visualization mapping igv written 12 months ago by marongiu.luigi • 420 • updated 10 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
169
views
0
answers
how should be coverage track of technical replicates of alignment visualization in BAM format?
bam visualization igv written 12 weeks ago by lkianmehr • 30
0
votes
5
answers
2.8k
views
6 follow
5
answers
Difference In Number Of Reads Using Samtools View And Igv
samtools rna-seq igv written 6.5 years ago by pm2013 • 50 • updated 3 months ago by Biostar ♦♦ 20
3
votes
1
answer
569
views
1
answer
Where is the IGV hg38 gene track from
igv written 13 months ago by alex.v.nesta • 10 • updated 3 months ago by jockbanan • 390
0
votes
0
answers
182
views
0
answers
IGV Error: Failed to write main dump
igv written 3 months ago by manubiomed20 • 0 • updated 3 months ago by ATpoint ♦ 26k
0
votes
0
answers
118
views
0
answers
Regions of interest in IGV when aligning to the transcriptome
transcriptome R alignment igv written 4 months ago by r.t.greenblatt • 0
3
votes
2
answers
360
views
5 follow
2
answers
Why are there many reads with green color in IGV of RNA-seq data?
mapping rna-seq igv written 4 months ago by Apprentice • 30 • updated 4 months ago by harold.smith.tarheel • 4.5k
3
votes
1
answer
219
views
1
answer
Mapping to custom reference minimap2/IGV
minimap2 mapping nanopore igv written 4 months ago by sendhelp • 0 • updated 4 months ago by genomax ♦ 74k
2
votes
3
answers
279
views
5 follow
3
answers
Export Coverage on IGV
igv coverage sequencing written 4 months ago by callieboskin • 0 • updated 4 months ago by trausch • 1.4k
0
votes
1
answer
160
views
1
answer
Interpreting splice junctions on IGV
alignment igv rna-seq sequencing written 4 months ago by jojorama • 0 • updated 4 months ago by geek_y ♦ 10.0k
0
votes
0
answers
261
views
0
answers
IGV Web App inside Flask Server
flask alignment bam igv written 5 months ago by milind_ag • 10
6
votes
2
answers
234
views
2
answers
DESeq2 results versus by eye comparison in IGV
deseq2 rna-seq igv written 5 months ago by kathryn.eckartt • 20 • updated 5 months ago by shawn.w.foley • 1.1k
2
votes
1
answer
218
views
1
answer
How can get very low counts in RNA-seq ?
rna-seq igv written 5 months ago by sabaghianamir70 • 10 • updated 5 months ago by swbarnes2 ♦ 7.0k
1
vote
0
answers
240
views
0
answers
BWA alignment and very low properly paired
alignment bwa igv written 5 months ago by seta • 1.2k • updated 5 months ago by swbarnes2 ♦ 7.0k
2
votes
0
answers
230
views
0
answers
EXCAVATOR shows 1 deletion which is not TRUE in IGV
exome excavator wes cnv igv written 6 months ago by lait • 140
12
votes
2
answers
2.9k
views
7 follow
2
answers
Trying To Pull Regions From An Online Bam File Without Downloading
bam samtools igv written 7.4 years ago by Wjeck • 480 • updated 7 months ago by Biostar ♦♦ 20
8
votes
2
answers
412
views
2
answers
tool to detect large deletions
deletions wes igv written 7 months ago by lait • 140 • updated 7 months ago by bari.ballew • 190
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