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83
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IGV or IGB
genome browser ngs igb rna-seq igv written 6 days ago by akivab2 • 60 • updated 3 days ago by Biostar ♦♦ 20
18
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0
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268
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7 follow
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Extremely important marker gene has many reads based on IGV viewer but no quantified reads
sequencing next-gen alignment rna-seq igv written 12 days ago by rbkh09 • 0
4
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1
answer
196
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1
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Hide insertion sites in IGV Browser, is it possible?
alignment igv written 3 months ago by Buffo • 1.2k • updated 20 days ago by Biostar ♦♦ 20
1
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1
answer
135
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6 follow
1
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IGV ignoring indexed and sorted .bai file and trying to create a .fai file to view an alignment
bai alignment igv fai bam written 29 days ago by cbm46672 • 0
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105
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bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 6 weeks ago by Pin.Bioinf • 200
3
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1
answer
150
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1
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How can I tell if there is CNV for specific gene in IGV?
cnv igv written 6 weeks ago by Pin.Bioinf • 200 • updated 6 weeks ago by Vitis • 1.7k
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174
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How to interpret a read hit with IGV?
interpretation alignment mapping igv written 9 weeks ago by marongiu.luigi • 350 • updated 7 weeks ago by Biostar ♦♦ 20
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78
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IGV browser for mafFrag output
maf maffrag igv written 7 weeks ago by tim.ivanov.92 • 10
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235
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Hidden reads in IGV
read quality visualization mapping igv written 8 weeks ago by marongiu.luigi • 350 • updated 8 weeks ago by Santosh Anand ♦ 4.4k
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2
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137
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2
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How to load BAM files that do not have chromosome name in the header?
rna-seq igv written 9 weeks ago by JC • 0 • updated 9 weeks ago by WouterDeCoster ♦ 35k
4
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1
answer
219
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1
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IGV - how to show all bases in track in bash script
bam viewer igv written 10 weeks ago by martinov.michael • 10 • updated 10 weeks ago by Jeremy Leipzig ♦ 18k
2
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1
answer
143
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1
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What sequence has being read by IGV's 'copy sequence'
igv alignment samtools coverage read map written 11 weeks ago by marongiu.luigi • 350 • updated 11 weeks ago by h.mon ♦ 22k
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2
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1.7k
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Extract gff of a particular chromosome
gff3 chromosome igv written 2.5 years ago by mhasa006 • 30 • updated 12 weeks ago by ahmedferoz20 • 10
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102
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Visualize B-allele frequency on IGV for 2 samples
file-format igv written 12 weeks ago by kuckunniwid • 20
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3
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276
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5 follow
3
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How to use own genome file in IGV?
genome annotation igv written 3 months ago by finswimmer ♦ 8.8k • updated 12 weeks ago by Charles Warden ♦ 5.9k
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1
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170
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1
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IGV/IGB add two lines in a track
wiggle igb igv written 3 months ago by r.beeloo • 0 • updated 3 months ago by morovatunc • 390
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0
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201
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Problem to Understand the visualization of IGV
dna sequence visualization igv written 3 months ago by saadleeshehreen • 60 • updated 3 months ago by Devon Ryan ♦ 87k
4
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1
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146
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1
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navigate IGV to the points of interest
visualization mapping igv written 3 months ago by marongiu.luigi • 350 • updated 3 months ago by toralmanvar • 730
1
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1
answer
274
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5 follow
1
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loaded a sorted bam file in IGV but I can't see anything
assembly bam igv written 3 months ago by saadleeshehreen • 60 • updated 3 months ago by Emily_Ensembl ♦ 16k
1
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1
answer
259
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1
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IGV empty tracks render in blue
cnv igv written 5 months ago by roy.granit • 750 • updated 3 months ago by Jim Robinson • 250
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1
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180
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1
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Where is the IGV hg38 gene track from
igv written 3 months ago by alex.v.nesta • 0 • updated 3 months ago by Jim Robinson • 250
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217
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 3 months ago by iraia.munoa • 50 • updated 3 months ago by RamRS ♦ 20k
19
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1
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16k
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1
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I loaded a BAM (RNA-seq) file into IGV but cant see anything!
bam index rna-seq bam visualization rna-seq igv written 4.1 years ago by jyalda2 • 10 • updated 3 months ago by RamRS ♦ 20k
2
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1
answer
237
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1
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Read Name in IGV and duplicates
igv written 3 months ago by ww22runner • 0 • updated 3 months ago by finswimmer ♦ 8.8k
4
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2
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216
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6 follow
2
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discrepancy between reads
reads bam igv deletion written 4 months ago by n.mekkes • 0 • updated 3 months ago by swbarnes2 ♦ 4.7k
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146
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0
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Pacbio inversion visualization and IGV
inversion igv written 4 months ago by Picasa • 390
2
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2
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316
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2
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Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
kallisto rna-seq igv written 4 months ago by Kristin Muench • 350 • updated 4 months ago by pmelsted • 80
2
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1
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267
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1
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two way get analysis data to get the obvious range difference in IGV
peak range chip-seq igv written 6 months ago by mikysyc2016 • 30 • updated 5 months ago by ATpoint ♦ 12k
8
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1
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555
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6 follow
1
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Identify insertions with IGV
insertions visualization igv written 5 months ago by marongiu.luigi • 350
9
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2
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425
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5 follow
2
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is this a potential mosaicism?
mosaicism alignment denovo bam igv written 5 months ago by lait • 120
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