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3
votes
1
answer
434
views
1
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Where is the IGV hg38 gene track from
igv written 10 months ago by alex.v.nesta • 0 • updated 18 days ago by jockbanan • 380
0
votes
0
answers
84
views
0
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IGV Error: Failed to write main dump
igv written 23 days ago by manubiomed20 • 0 • updated 23 days ago by ATpoint ♦ 21k
0
votes
0
answers
69
views
0
answers
Regions of interest in IGV when aligning to the transcriptome
transcriptome R alignment igv written 5 weeks ago by r.t.greenblatt • 0
2
votes
2
answers
251
views
5 follow
2
answers
Why are there many reads with green color in IGV of RNA-seq data?
mapping rna-seq igv written 6 weeks ago by Apprentice • 20 • updated 5 weeks ago by harold.smith.tarheel • 4.4k
3
votes
1
answer
109
views
1
answer
Mapping to custom reference minimap2/IGV
minimap2 mapping nanopore igv written 5 weeks ago by sendhelp • 0 • updated 5 weeks ago by genomax ♦ 70k
2
votes
3
answers
173
views
5 follow
3
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Export Coverage on IGV
igv coverage sequencing written 6 weeks ago by callieboskin • 0 • updated 6 weeks ago by trausch • 1.4k
0
votes
1
answer
100
views
1
answer
Interpreting splice junctions on IGV
alignment igv rna-seq sequencing written 7 weeks ago by jojorama • 0 • updated 7 weeks ago by geek_y ♦ 9.8k
0
votes
0
answers
175
views
0
answers
IGV Web App inside Flask Server
flask alignment bam igv written 8 weeks ago by milind_ag • 10
6
votes
2
answers
170
views
2
answers
DESeq2 results versus by eye comparison in IGV
deseq2 rna-seq igv written 9 weeks ago by kathryn.eckartt • 20 • updated 9 weeks ago by shawn.w.foley • 830
2
votes
1
answer
165
views
1
answer
How can get very low counts in RNA-seq ?
rna-seq igv written 11 weeks ago by sabaghianamir70 • 0 • updated 11 weeks ago by swbarnes2 ♦ 6.1k
1
vote
0
answers
169
views
0
answers
BWA alignment and very low properly paired
alignment bwa igv written 11 weeks ago by seta • 1.2k • updated 11 weeks ago by swbarnes2 ♦ 6.1k
2
votes
0
answers
177
views
0
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EXCAVATOR shows 1 deletion which is not TRUE in IGV
exome excavator wes cnv igv written 3 months ago by lait • 140
12
votes
2
answers
2.8k
views
7 follow
2
answers
Trying To Pull Regions From An Online Bam File Without Downloading
bam samtools igv written 7.1 years ago by Wjeck • 480 • updated 4 months ago by Biostar ♦♦ 20
8
votes
2
answers
306
views
2
answers
tool to detect large deletions
deletions wes igv written 4 months ago by lait • 140 • updated 4 months ago by bari.ballew • 160
1
vote
1
answer
161
views
1
answer
Blue line in Alignment track of IGV
igv written 4 months ago by mb314 • 0 • updated 4 months ago by Buffo • 1.6k
0
votes
0
answers
184
views
0
answers
IGV interpretation of assembled and annotated transcriptome reads in an allotetraploid
duplicate allotetraploid igv rna-seq transcriptome written 4 months ago by ksgouros • 0 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
247
views
1
answer
Partial amplicon region missing from mapping data
virus mapping bwa igv written 4 months ago by lakhujanivijay ♦ 4.3k • updated 4 months ago by swbarnes2 ♦ 6.1k
4
votes
2
answers
428
views
2
answers
VCF file from DanteLabs Dante Labs does not load in IGV
vcf igv index written 4 months ago by urishab • 10 • updated 4 months ago by Charles Warden ♦ 7.2k
2
votes
1
answer
241
views
1
answer
IGV genome browser not displaying visualization when BAM file is uploaded
alignment igv written 4 months ago by tw617 • 30 • updated 4 months ago by genomax ♦ 70k
3
votes
0
answers
143
views
0
answers
Is there an htsget compatible bam viewer?
htsget igv written 5 months ago by e.benn • 110
1
vote
0
answers
209
views
0
answers
TDF Coverage in Figure
igv rna-seq coverage tdf m6a written 5 months ago by Charles Warden ♦ 7.2k
1
vote
0
answers
320
views
0
answers
Help interpreting IGV sashimi plots for paired-end RNAseq data
sashimi rna-seq igv written 5 months ago by spykexxx • 10
0
votes
0
answers
260
views
0
answers
News: Integrative Genomic Viewer (IGV) works with Amazon S3
news amazon igv written 6 months ago by Roman Valls Guimerà • 520
0
votes
1
answer
373
views
1
answer
ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 6 months ago by Susmita Mandal • 50 • updated 6 months ago by i.sudbery ♦ 5.1k
4
votes
3
answers
424
views
3
answers
Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 6 months ago by sm.hashemin • 90
0
votes
1
answer
341
views
1
answer
IGV alignment explanation
bam igv written 6 months ago by David • 160 • updated 6 months ago by h.mon ♦ 26k
0
votes
0
answers
458
views
0
answers
Visualize BEDPE file
bed hic igv written 7 months ago by ste.lu • 40
1
vote
0
answers
455
views
0
answers
IGV or IGB
genome browser ngs igb rna-seq igv written 7 months ago by akivab2 • 100 • updated 7 months ago by Biostar ♦♦ 20
18
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0
answers
517
views
7 follow
0
answers
Extremely important marker gene has many reads based on IGV viewer but no quantified reads
sequencing next-gen alignment rna-seq igv written 7 months ago by rbkh09 • 0
4
votes
1
answer
378
views
1
answer
Hide insertion sites in IGV Browser, is it possible?
alignment igv written 11 months ago by Buffo • 1.6k • updated 7 months ago by Biostar ♦♦ 20
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