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<prev • 165 results • page 1 of 6 • next >
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143
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IGV color interpretation by insert size
igv written 4 days ago by komal.rathi • 2.9k • updated 4 days ago by Istvan Albert ♦♦ 73k
1
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1
answer
131
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1
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Kallisto pseudobam to IGV
alignment igv kallisto pseudobam rna-seq written 4 days ago by mac • 50 • updated 4 days ago by andrew.j.skelton73 • 3.5k
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0
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123
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igv_plotter error, I cannot run igv_plotter on my BAM file, RuntimeError: Xvfb did not start
visualisation igv igv_plotter error bam file written 6 days ago by cristian • 50
2
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1
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159
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1
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IGV error: Error loading SAM header: For sequence 34711, text and binary have different lengths in file.
bam rna-seq igv written 12 days ago by EVR • 430 • updated 11 days ago by dyollluap • 270
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1
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88
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1
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IGV: Show reference sequence?
reference igv written 13 days ago by Marvin • 90
3
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1
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99
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1
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Rsamtools and BAM file discordance
reads bam samtools rsamtools igv written 16 days ago by cristian • 50 • updated 16 days ago by Devon Ryan ♦ 68k
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95
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Trying to check plasmid alignment
plasmid bam igv written 6 weeks ago by gracie • 0
3
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1
answer
142
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1
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I can not see BAM file in IGV
methylation igv written 7 weeks ago by Michel Edwar • 40
24
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1
answer
296
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7 follow
1
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Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 8 weeks ago by andreslanzos • 50 • updated 8 weeks ago by d-cameron • 740
3
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1
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125
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1
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tips for checking variants in IGV
bam igv germline written 8 weeks ago by jan • 60 • updated 8 weeks ago by Vivek • 1.7k
2
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1
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173
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1
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Add color tag to bam alignedReads using pysam
pysam rna-seq igv written 10 weeks ago by pyKey • 10
0
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1
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154
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1
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Depth of coverage in Bam file does not match depth in VCF file
indel variant calling pindel coverage igv written 10 weeks ago by jsneaththompson • 0 • updated 10 weeks ago by tangming2005 • 2.1k
2
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1
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168
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1
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how to display RNA-seq coverage data in negative strand with log scale?
rna-seq igv written 11 weeks ago by murathong • 90 • updated 11 weeks ago by wuchangcheng66 • 10
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184
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IGV Could not create index file when loading GFF3
gff3 igv written 12 weeks ago by emurb • 0
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2
answers
688
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2
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BED alignments not positioned properly in IGV
sequencing alignment igv written 20 months ago by ad • 30 • updated 3 months ago by Trof • 0
1
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0
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179
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0
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re-scale IGV tracks using batch script
rna-seq igv written 3 months ago by galozs • 0
6
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2
answers
249
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5 follow
2
answers
Figure quality browser tracks
sequencing ucsc igv browser written 4 months ago by rbronste • 120 • updated 4 months ago by Ben_Ensembl • 280
0
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0
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149
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0
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IGV Read Depth Threshold Setting
sequencing next-gen igv written 4 months ago by nick • 0
6
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0
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421
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5 follow
0
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Tool: Automatic IGV snapshot script
tutorial chip-seq tool igv written 4 months ago by steve • 780
2
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0
answers
219
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8 follow
0
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Abnormal pair orientation in RNA-seq data
rna-seq inversion igv written 4 months ago by gerrybio2010 • 710
1
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0
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267
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0
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IGV white read color meaning
igv written 4 months ago by biotech • 500
1
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1
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202
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1
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bigwig file can see in igv but not in ucsc
ucsc rna-seq igv written 5 months ago by yuxinghai • 0
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0
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186
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0
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User documentation for IGV.js
igv written 5 months ago by gauravsingh.singh86 • 20
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0
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212
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0
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IGV Allele Frequency threshold.
alignment bam igv written 5 months ago by clear.choi • 30
3
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2
answers
325
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2
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Align short reads to multifasta reference - cant see in IGV
gene alignment next-gen igv sequencing written 5 months ago by kanacska • 0 • updated 5 months ago by igor • 4.4k
4
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2
answers
365
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2
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what do read with blue outline represent in IGV?
alignment igv written 5 months ago by aindap • 100 • updated 5 months ago by Biomonika (Noolean) ♦ 2.9k
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233
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How to find if a y-chromosome has the M242 marker in IGV
haplotype marker sequence y-dna igv written 5 months ago by beneficii • 20
0
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0
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271
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0
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IGV idxsession files with bigwig URLs
bigwig igv written 6 months ago by 14134125465346445 • 3.3k
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0
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332
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0
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RSEM and IGV viewer
next-gen rna-seq igv written 6 months ago by kaur.devbio • 0 • updated 6 months ago by WouterDeCoster ♦ 20k
2
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0
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826
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0
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How to do unsupervised clustering using copy number variation data?
R snp cnv clustering igv written 13 months ago by dr.chenway • 10 • updated 6 months ago by manali.rupji • 0
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