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<prev • 258 results • page 1 of 9 • next >
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Is there an htsget compatible bam viewer?
htsget igv written 11 days ago by e.benn • 70
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78
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TDF Coverage in Figure
igv rna-seq coverage tdf m6a written 11 days ago by Charles Warden ♦ 6.4k
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92
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Help interpreting IGV sashimi plots for paired-end RNAseq data
sashimi rna-seq igv written 18 days ago by spykexxx • 10
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84
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News: Integrative Genomic Viewer (IGV) works with Amazon S3
news amazon igv written 4 weeks ago by Roman Valls Guimerà • 510
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1
answer
127
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1
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ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 5 weeks ago by Susmita Mandal • 30 • updated 5 weeks ago by i.sudbery ♦ 4.0k
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3
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171
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3
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Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 6 weeks ago by sm.hashemin • 60
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1
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152
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1
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IGV alignment explanation
bam igv written 7 weeks ago by David • 150 • updated 7 weeks ago by h.mon ♦ 24k
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161
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Visualize BEDPE file
bed hic igv written 8 weeks ago by ste.lu • 40
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201
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IGV or IGB
genome browser ngs igb rna-seq igv written 9 weeks ago by akivab2 • 70 • updated 9 weeks ago by Biostar ♦♦ 20
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345
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7 follow
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Extremely important marker gene has many reads based on IGV viewer but no quantified reads
sequencing next-gen alignment rna-seq igv written 10 weeks ago by rbkh09 • 0
4
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1
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257
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1
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Hide insertion sites in IGV Browser, is it possible?
alignment igv written 5 months ago by Buffo • 1.3k • updated 11 weeks ago by Biostar ♦♦ 20
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1
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224
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6 follow
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IGV ignoring indexed and sorted .bai file and trying to create a .fai file to view an alignment
bai alignment igv fai bam written 3 months ago by cbm46672 • 0
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159
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bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 3 months ago by Pin.Bioinf • 240
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1
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223
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1
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How can I tell if there is CNV for specific gene in IGV?
cnv igv written 3 months ago by Pin.Bioinf • 240 • updated 3 months ago by Vitis • 2.0k
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235
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How to interpret a read hit with IGV?
interpretation alignment mapping igv written 4 months ago by marongiu.luigi • 380 • updated 3 months ago by Biostar ♦♦ 20
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112
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IGV browser for mafFrag output
maf maffrag igv written 3 months ago by tim.ivanov.92 • 10
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325
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Hidden reads in IGV
read quality visualization mapping igv written 3 months ago by marongiu.luigi • 380 • updated 3 months ago by Santosh Anand ♦ 4.6k
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2
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192
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2
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How to load BAM files that do not have chromosome name in the header?
rna-seq igv written 4 months ago by JC • 0 • updated 4 months ago by WouterDeCoster ♦ 37k
4
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1
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271
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1
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IGV - how to show all bases in track in bash script
bam viewer igv written 4 months ago by martinov.michael • 10 • updated 4 months ago by Jeremy Leipzig ♦ 18k
2
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1
answer
187
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1
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What sequence has being read by IGV's 'copy sequence'
igv alignment samtools coverage read map written 4 months ago by marongiu.luigi • 380 • updated 4 months ago by h.mon ♦ 24k
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2
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1.9k
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Extract gff of a particular chromosome
gff3 chromosome igv written 2.7 years ago by mhasa006 • 30 • updated 4 months ago by ahmedferoz20 • 10
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145
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Visualize B-allele frequency on IGV for 2 samples
file-format igv written 5 months ago by kuckunniwid • 20
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3
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404
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5 follow
3
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How to use own genome file in IGV?
genome annotation igv written 5 months ago by finswimmer ♦ 11k • updated 5 months ago by Charles Warden ♦ 6.4k
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1
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222
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1
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IGV/IGB add two lines in a track
wiggle igb igv written 5 months ago by r.beeloo • 0 • updated 5 months ago by morovatunc • 400
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0
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245
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Problem to Understand the visualization of IGV
dna sequence visualization igv written 5 months ago by saadleeshehreen • 60 • updated 5 months ago by Devon Ryan ♦ 88k
4
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1
answer
187
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1
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navigate IGV to the points of interest
visualization mapping igv written 5 months ago by marongiu.luigi • 380 • updated 5 months ago by toralmanvar • 750
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1
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342
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5 follow
1
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loaded a sorted bam file in IGV but I can't see anything
assembly bam igv written 5 months ago by saadleeshehreen • 60 • updated 5 months ago by Emily_Ensembl ♦ 17k
1
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1
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324
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1
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IGV empty tracks render in blue
cnv igv written 7 months ago by roy.granit • 780 • updated 5 months ago by Jim Robinson • 250
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1
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239
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1
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Where is the IGV hg38 gene track from
igv written 5 months ago by alex.v.nesta • 0 • updated 5 months ago by Jim Robinson • 250
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 5 months ago by iraia.munoa • 60 • updated 5 months ago by RamRS ♦ 20k
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