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How to load BAM files that do not have chromosome name in the header?
rna-seq igv written 4 days ago by JC • 0 • updated 4 days ago by WouterDeCoster ♦ 34k
0
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0
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87
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How to interpret a read hit with IGV?
interpretation alignment mapping igv written 6 days ago by marongiu.luigi • 330
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1
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162
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1
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IGV - how to show all bases in track in bash script
bam viewer igv written 12 days ago by martinov.michael • 10 • updated 12 days ago by Jeremy Leipzig ♦ 18k
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1
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76
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1
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What sequence has being read by IGV's 'copy sequence'
igv alignment samtools coverage read map written 15 days ago by marongiu.luigi • 330 • updated 15 days ago by h.mon ♦ 21k
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1.5k
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Extract gff of a particular chromosome
gff3 chromosome igv written 2.4 years ago by mhasa006 • 30 • updated 23 days ago by ahmedferoz20 • 10
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66
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Visualize B-allele frequency on IGV for 2 samples
file-format igv written 25 days ago by kuckunniwid • 20
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3
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168
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5 follow
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How to use own genome file in IGV?
genome annotation igv written 29 days ago by finswimmer ♦ 6.7k • updated 25 days ago by Charles Warden ♦ 5.6k
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1
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122
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1
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IGV/IGB add two lines in a track
wiggle igb igv written 4 weeks ago by r.beeloo • 0 • updated 29 days ago by morovatunc • 380
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0
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154
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Problem to Understand the visualization of IGV
dna sequence visualization igv written 4 weeks ago by saadleeshehreen • 40 • updated 4 weeks ago by Devon Ryan ♦ 86k
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1
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107
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1
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navigate IGV to the points of interest
visualization mapping igv written 5 weeks ago by marongiu.luigi • 330 • updated 5 weeks ago by toralmanvar • 650
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1
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196
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5 follow
1
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loaded a sorted bam file in IGV but I can't see anything
assembly bam igv written 5 weeks ago by saadleeshehreen • 40 • updated 5 weeks ago by Emily_Ensembl ♦ 16k
1
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1
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209
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1
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IGV empty tracks render in blue
cnv igv written 3 months ago by roy.granit • 740 • updated 5 weeks ago by Jim Robinson • 250
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1
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115
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1
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Where is the IGV hg38 gene track from
igv written 5 weeks ago by alex.v.nesta • 0 • updated 5 weeks ago by Jim Robinson • 250
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147
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 7 weeks ago by iraia.munoa • 10 • updated 7 weeks ago by RamRS ♦ 19k
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1
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15k
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1
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I loaded a BAM (RNA-seq) file into IGV but cant see anything!
bam index rna-seq bam visualization rna-seq igv written 4.0 years ago by jyalda2 • 10 • updated 7 weeks ago by RamRS ♦ 19k
2
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1
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170
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1
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Read Name in IGV and duplicates
igv written 7 weeks ago by ww22runner • 0 • updated 7 weeks ago by finswimmer ♦ 6.7k
2
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1
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142
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1
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Hide insertion sites in IGV Browser, is it possible?
alignment igv written 7 weeks ago by Buffo • 1.2k
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2
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178
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6 follow
2
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discrepancy between reads
reads bam igv deletion written 8 weeks ago by n.mekkes • 0 • updated 8 weeks ago by swbarnes2 ♦ 4.5k
1
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0
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105
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0
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Pacbio inversion visualization and IGV
inversion igv written 8 weeks ago by Picasa • 390
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262
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Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
kallisto rna-seq igv written 9 weeks ago by Kristin Muench • 330 • updated 9 weeks ago by pmelsted • 70
2
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1
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226
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1
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two way get analysis data to get the obvious range difference in IGV
peak range chip-seq igv written 4 months ago by mikysyc2016 • 20 • updated 3 months ago by ATpoint ♦ 9.1k
8
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1
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381
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6 follow
1
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Identify insertions with IGV
insertions visualization igv written 3 months ago by marongiu.luigi • 330
9
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2
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374
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5 follow
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is this a potential mosaicism?
mosaicism alignment denovo bam igv written 3 months ago by lait • 120
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193
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Focal copy number alterations in IGV
cna tcga copy number igv written 3 months ago by neuro3030 • 0
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1
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219
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1
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Salmon / IGV
salmon igv written 3 months ago by vincentpailler • 30 • updated 3 months ago by h.mon ♦ 21k
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205
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Launching IGV within Java IDE (NetBeans)?
netbeans java alignment igv written 3 months ago by justinyuen22 • 0
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1
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213
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1
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Discrepancy between VEP and IGV
gwas igv vep sequencing written 3 months ago by ijk8qd • 0
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2
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464
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BAM File Export Coverage Values from IGV or using PySam/Samtools
alignment samtools igv bam sequencing written 7 months ago by EOX123 • 10 • updated 3 months ago by christophersemail40 • 0
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121
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reload IGV exported feature to Gviz
gviz igv written 4 months ago by ta_awwad • 170
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1
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314
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1
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Find Intersections Between ClinVar Track and VCF In IGV
vcf clinvar igv written 4 months ago by otwtgin2010 • 110 • updated 4 months ago by rbagnall • 1.3k
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