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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 1 day ago by iraia.munoa • 10 • updated 1 day ago by RamRS ♦ 17k
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1
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1
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I loaded a BAM (RNA-seq) file into IGV but cant see anything!
bam index rna-seq bam visualization rna-seq igv written 3.8 years ago by jyalda2 • 10 • updated 1 day ago by RamRS ♦ 17k
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1
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86
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Read Name in IGV and duplicates
igv written 3 days ago by ww22runner • 0 • updated 2 days ago by finswimmer ♦ 5.4k
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1
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79
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1
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Hide insertion sites in IGV Browser, is it possible?
alignment igv written 3 days ago by Buffo • 1.1k
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6 follow
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discrepancy between reads
reads bam igv deletion written 6 days ago by n.mekkes • 0 • updated 5 days ago by swbarnes2 ♦ 4.0k
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Pacbio inversion visualization and IGV
inversion igv written 11 days ago by Picasa • 380
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181
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Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
kallisto rna-seq igv written 14 days ago by Kristin Muench • 310 • updated 14 days ago by pmelsted • 70
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145
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IGV empty tracks render in blue
cnv igv written 8 weeks ago by roy.granit • 740 • updated 4 weeks ago by Biostar ♦♦ 20
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1
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187
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1
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two way get analysis data to get the obvious range difference in IGV
peak range chip-seq igv written 3 months ago by mikysyc2016 • 20 • updated 5 weeks ago by ATpoint ♦ 7.5k
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1
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238
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6 follow
1
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Identify insertions with IGV
insertions visualization igv written 6 weeks ago by marongiu.luigi • 300
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2
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325
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5 follow
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is this a potential mosaicism?
mosaicism alignment denovo bam igv written 6 weeks ago by lait • 120
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144
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Focal copy number alterations in IGV
cna tcga copy number igv written 7 weeks ago by neuro3030 • 0
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Salmon / IGV
salmon igv written 7 weeks ago by vincentpailler • 30 • updated 7 weeks ago by h.mon ♦ 19k
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Launching IGV within Java IDE (NetBeans)?
netbeans java alignment igv written 8 weeks ago by justinyuen22 • 0
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1
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170
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1
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Discrepancy between VEP and IGV
gwas igv vep sequencing written 8 weeks ago by ijk8qd • 0
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2
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387
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BAM File Export Coverage Values from IGV or using PySam/Samtools
alignment samtools igv bam sequencing written 5 months ago by EOX123 • 10 • updated 8 weeks ago by christophersemail40 • 0
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reload IGV exported feature to Gviz
gviz igv written 10 weeks ago by ta_awwad • 150
8
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1
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244
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1
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Find Intersections Between ClinVar Track and VCF In IGV
vcf clinvar igv written 11 weeks ago by otwtgin2010 • 70 • updated 11 weeks ago by rbagnall • 1.3k
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297
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kallisto pseudoaligned bam files to IGV
kallisto rna-seq igv written 12 weeks ago by hothriananya • 50
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113
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Can IGV tell me where to look?
minion nanopore igv written 11 weeks ago by francois • 10
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problem with genome viewer IGV
bam mapping igv written 12 weeks ago by StudentBio • 0 • updated 12 weeks ago by genomax ♦ 55k
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1
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IGV not highlighting possible variants
igv written 3 months ago by francois • 10 • updated 3 months ago by genomax ♦ 55k
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240
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1
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Where are my reads in IGV?
alignment igv written 3 months ago by francois • 10
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303
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"Invalid BAM file header: missing sequence name in file" when trying to visualise .bam file in IGV
alignment bam igv written 3 months ago by francois • 10 • updated 3 months ago by WouterDeCoster ♦ 32k
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1
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138
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1
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Can IGV be used to visualize Mitogenome readpools
igv written 3 months ago by F.I.2011 • 10 • updated 3 months ago by b.nota ♦ 4.9k
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204
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Bedtools intersect -u or -wa causing issues
bedtools python pybedtools igv written 3 months ago by alex.v.nesta • 0
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204
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5 follow
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Is there a way to save a specific Gene in IGV of a whole exome sample?
sequence bam igv written 3 months ago by mhmtgenc85 • 30 • updated 3 months ago by sacha • 1.5k
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Error of SAMSequenceDictionary
samtools sam igv written 4 months ago by niu.shengyong • 30 • updated 4 months ago by genomax ♦ 55k
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1
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242
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1
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IGV tracks gene annotation
gene gff igv written 4 months ago by bitpir • 90 • updated 4 months ago by h.mon ♦ 19k
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IGV: how is "Quality weight allele fraction" calculated?
varint calling snv igv written 4 months ago by omer.k • 20
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