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<prev • 315 results • page 1 of 11 • next >
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Can I extract annotation file from genbank format or modify on current gff file?
annotation chip-seq igv written 13 hours ago by Ripacoco • 0
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40
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see base quality from IGV
reads igv written 3 days ago by yliueagle • 220 • updated 3 days ago by ATpoint ♦ 40k
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273
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IGV create genome: cytoband not working
rna-seq igv written 13 months ago by nlehmann • 100 • updated 6 days ago by jinkai0621 • 0
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1
answer
99
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1
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Error loading BAM on IGV
software error bam igv written 24 days ago by Apex92 • 20 • updated 24 days ago by Pierre Lindenbaum ♦ 131k
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100
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1
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igv different width on reference gene exon
igv written 26 days ago by Nich • 10 • updated 26 days ago by Jorge Amigo ♦ 12k
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107
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VCFs appear inconsistent with view of alignment
vcf gatk freebayes bbmap igv written 4 weeks ago by mark.rose • 40
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116
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Extract number of INDELs of a specific position for bam file or IGV
indels ngs alignment nanopore igv written 7 weeks ago by igit_b • 0
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1
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161
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1
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Error-prone human genomic sequence data from Illumina sequencing platform
genome deletions insertions igv written 11 weeks ago by rbpdee • 30 • updated 11 weeks ago by donfreed • 1.5k
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227
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Make genes from GTF annotation searchable in IGV
gtf gene igv written 12 weeks ago by bataloffv • 20
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114
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genome in IGV session file
genome xml igv session written 12 weeks ago by mark.rose • 40
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1
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315
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How to explain that mutations called by Mutect2 are inconsistent with what I saw in iGV?
gatk igv mutation mutect2 written 3 months ago by Makplus T • 70 • updated 3 months ago by davidben • 20
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How to prepare a BED file to make a sashimi plot in IGV?
bed sashimi igv written 4.8 years ago by Joseph Hughes • 2.8k • updated 3 months ago by Juan Felipe Ortiz • 0
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IGV or IGB
genome browser ngs igb rna-seq igv written 21 months ago by akivab2 • 100 • updated 3 months ago by xunshengbu • 0
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164
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Visualizing pacbio-derived alignment in IGV
alignment igv pbi bam written 4 months ago by cugopal • 0
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1
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297
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1
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Gene alignment with IGV
alignment igv written 4 months ago by flappix • 30
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1
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211
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1
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What could be a reason for peaks called via Macs2 not appearing as real peaks in IGV?
macs2 igv written 4 months ago by Sam • 50 • updated 4 months ago by ATpoint ♦ 40k
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3
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418
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5 follow
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Visualizations of chimeric connections in different chromosomes
assembly igv inter-chromosomal chimeric junction written 12 months ago by lucas.caue.jacintho • 30 • updated 4 months ago by Jim Robinson • 290
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2
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366
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2
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IGV memory on Windows
gff igv written 6 months ago by liorglic • 340 • updated 4 months ago by Jim Robinson • 290
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1
answer
814
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1
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IGV Web App inside Flask Server
flask alignment bam igv written 16 months ago by milind_ag • 10 • updated 4 months ago by Jim Robinson • 290
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161
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IGV NullPointerException problem
alignment igv written 4 months ago by life99945 • 20
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142
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How to visualize multiple sequence alignment and read coverage simultaneously
alignment igv written 5 months ago by callamartyn • 10
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1
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347
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1
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Nanopore structural variant calling - more than 2 alleles on IGV track?
vcf nanopore structural variant igv written 9 months ago by BioinformaticsLad • 160 • updated 5 months ago by minalj365 • 0
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1
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245
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1
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IGV browser memory leak?
ram igv written 6 months ago by alessandro.derzelle • 0 • updated 6 months ago by JC ♦ 11k
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2
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205
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2
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Finding the Refseq Soft-masked Regions
refseq igv written 6 months ago by benformatics • 2.0k • updated 6 months ago by vkkodali • 2.1k
3
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294
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Reads shown in IGV not quantified by featureCounts
featurecounts rna-seq igv written 6 months ago by a.palmer • 20
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2
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202
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2
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visualize my .BAM file in IGV
.bam alignment rna igv bowtie2 written 6 months ago by christiangriffioen • 20 • updated 6 months ago by Pierre Lindenbaum ♦ 131k
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1
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607
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1
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IGV error: Error reading BBFile header for bw files
bw igv written 9 months ago by weiyanjia2008 • 30 • updated 6 months ago by bhanratt • 40
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1
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152
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1
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[IGV] Is it an aneuploidy ?
genome alignment igv sequencing written 6 months ago by forumpseudo • 0 • updated 6 months ago by d-cameron • 2.2k
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215
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Snap aligner to Igv?
aligner snap igv written 7 months ago by newbie • 0
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395
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Kallisto, --genomebam, and IGV visualization problem
alignment igv kallisto bam rna-seq written 7 months ago by jtoker • 0
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