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<prev • 173 results • page 1 of 6 • next >
1
vote
2
answers
108
views
2
answers
VIew reads sorted by name in IGV
bam samtools igv written 2 days ago by nchuang • 160 • updated 1 day ago by d-cameron • 850
0
votes
0
answers
118
views
0
answers
Retrieving coverage image
next-gen igv coverage rna-seq expression written 4 days ago by BPors • 10
2
votes
1
answer
128
views
1
answer
HG19 Annotation download with Gene Names.
genome annotation hg19 bed igv written 4 days ago by clear.choi • 30 • updated 4 days ago by genecats.ucsc • 340
4
votes
2
answers
170
views
2
answers
Why reads not match to the genome? too many wrong bases to the genome
tophat rna-seq igv written 14 days ago by maple964 • 0
0
votes
0
answers
110
views
0
answers
GFF from tabular Blast output
gff tabix blast igv written 14 days ago by salvatore.lachina • 0
12
votes
5
answers
432
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9 follow
5
answers
Genome Browser suggestions
genome browser gbrowse non-model igv written 21 days ago by Macspider • 1.4k • updated 16 days ago by jrj.healey • 2.3k
2
votes
1
answer
185
views
1
answer
Custom features in IGV
gtf features igv written 24 days ago by jhanks1981 • 0 • updated 24 days ago by Dan D ♦ 6.2k
1
vote
1
answer
226
views
1
answer
What do outlined reads in IGV represent?
alignment next-gen igv written 7 weeks ago by jsneaththompson • 0 • updated 7 weeks ago by Vijay Lakhujani • 1.2k
2
votes
3
answers
347
views
3
answers
Kallisto pseudobam to IGV
alignment igv kallisto pseudobam rna-seq written 8 weeks ago by mac • 50 • updated 7 weeks ago by Antonio R. Franco • 3.4k
0
votes
1
answer
242
views
1
answer
IGV color interpretation by insert size
igv written 8 weeks ago by komal.rathi • 2.9k • updated 8 weeks ago by Istvan Albert ♦♦ 73k
1
vote
0
answers
185
views
0
answers
igv_plotter error, I cannot run igv_plotter on my BAM file, RuntimeError: Xvfb did not start
visualisation igv igv_plotter error bam file written 9 weeks ago by cristian • 80
2
votes
1
answer
240
views
1
answer
IGV error: Error loading SAM header: For sequence 34711, text and binary have different lengths in file.
bam rna-seq igv written 10 weeks ago by EVR • 430 • updated 9 weeks ago by dyollluap • 270
0
votes
1
answer
134
views
1
answer
IGV: Show reference sequence?
reference igv written 10 weeks ago by Marvin • 90
3
votes
1
answer
152
views
1
answer
Rsamtools and BAM file discordance
reads bam samtools rsamtools igv written 10 weeks ago by cristian • 80 • updated 10 weeks ago by Devon Ryan ♦ 70k
0
votes
0
answers
137
views
0
answers
Trying to check plasmid alignment
plasmid bam igv written 3 months ago by gracie • 0
3
votes
1
answer
224
views
1
answer
I can not see BAM file in IGV
methylation igv written 3 months ago by Michel Edwar • 40
24
votes
1
answer
372
views
7 follow
1
answer
Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 3 months ago by andreslanzos • 50 • updated 3 months ago by d-cameron • 850
3
votes
1
answer
165
views
1
answer
tips for checking variants in IGV
bam igv germline written 3 months ago by jan • 60 • updated 3 months ago by Vivek • 1.9k
2
votes
1
answer
236
views
1
answer
Add color tag to bam alignedReads using pysam
pysam rna-seq igv written 4 months ago by pyKey • 10
0
votes
1
answer
214
views
1
answer
Depth of coverage in Bam file does not match depth in VCF file
indel variant calling pindel coverage igv written 4 months ago by jsneaththompson • 0 • updated 4 months ago by tangming2005 • 2.1k
3
votes
1
answer
230
views
5 follow
1
answer
how to display RNA-seq coverage data in negative strand with log scale?
rna-seq igv written 4 months ago by murathong • 90 • updated 4 months ago by wuchangcheng66 • 10
0
votes
0
answers
300
views
0
answers
IGV Could not create index file when loading GFF3
gff3 igv written 4 months ago by emurb • 0
0
votes
2
answers
752
views
2
answers
BED alignments not positioned properly in IGV
sequencing alignment igv written 22 months ago by ad • 30 • updated 5 months ago by Trof • 0
1
vote
0
answers
240
views
0
answers
re-scale IGV tracks using batch script
rna-seq igv written 5 months ago by galozs • 0
6
votes
2
answers
290
views
5 follow
2
answers
Figure quality browser tracks
sequencing ucsc igv browser written 6 months ago by rbronste • 140 • updated 6 months ago by Ben_Ensembl • 300
0
votes
0
answers
188
views
0
answers
IGV Read Depth Threshold Setting
sequencing next-gen igv written 6 months ago by nick • 0
6
votes
0
answers
521
views
5 follow
0
answers
Tool: Automatic IGV snapshot script
tutorial chip-seq tool igv written 6 months ago by steve • 860
2
votes
0
answers
263
views
8 follow
0
answers
Abnormal pair orientation in RNA-seq data
rna-seq inversion igv written 6 months ago by gerrybio2010 • 710
1
vote
0
answers
362
views
0
answers
IGV white read color meaning
igv written 6 months ago by biotech • 500
1
vote
1
answer
247
views
1
answer
bigwig file can see in igv but not in ucsc
ucsc rna-seq igv written 7 months ago by yuxinghai • 0
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