Showing: igvreset
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12
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2
answers
2.6k
views
7 follow
2
answers
Trying To Pull Regions From An Online Bam File Without Downloading
bam samtools igv written 6.8 years ago by Wjeck480 • updated 5 days ago by Biostar ♦♦ 20
7
votes
1
answer
172
views
1
answer
tool to detect large deletions
deletions wes igv written 12 days ago by lait130 • updated 11 days ago by bari.ballew40
1
vote
1
answer
70
views
1
answer
Blue line in Alignment track of IGV
igv written 11 days ago by mb3140 • updated 11 days ago by Buffo1.5k
0
votes
0
answers
112
views
0
answers
0
votes
1
answer
164
views
1
answer
Partial amplicon region missing from mapping data
virus mapping bwa igv written 15 days ago by Vijay Lakhujani4.0k • updated 15 days ago by swbarnes25.2k
3
votes
2
answers
167
views
2
answers
VCF file from DanteLabs Dante Labs does not load in IGV
vcf igv index written 25 days ago by urishab10 • updated 25 days ago by Charles Warden6.6k
2
votes
1
answer
136
views
1
answer
IGV genome browser not displaying visualization when BAM file is uploaded
alignment igv written 26 days ago by tw61730 • updated 26 days ago by genomax65k
3
votes
0
answers
84
views
0
answers
1
vote
0
answers
129
views
0
answers
TDF Coverage in Figure
igv rna-seq coverage tdf m6a written 6 weeks ago by Charles Warden6.6k
1
vote
0
answers
141
views
0
answers
0
votes
0
answers
115
views
0
answers
0
votes
1
answer
186
views
1
answer
ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 10 weeks ago by Susmita Mandal30 • updated 10 weeks ago by i.sudbery4.3k
4
votes
3
answers
222
views
3
answers
0
votes
1
answer
203
views
1
answer
IGV alignment explanation
bam igv written 12 weeks ago by David150 • updated 12 weeks ago by h.mon24k
0
votes
0
answers
221
views
0
answers
Visualize BEDPE file
bed hic igv written 3 months ago by ste.lu40
1
vote
0
answers
257
views
0
answers
IGV or IGB
genome browser ngs igb rna-seq igv written 3 months ago by akivab290 • updated 3 months ago by Biostar ♦♦ 20
18
votes
0
answers
388
views
7 follow
0
answers
4
votes
1
answer
290
views
1
answer
Hide insertion sites in IGV Browser, is it possible?
alignment igv written 7 months ago by Buffo1.5k • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
284
views
6 follow
1
answer
1
vote
0
answers
186
views
0
answers
3
votes
1
answer
262
views
1
answer
How can I tell if there is CNV for specific gene in IGV?
cnv igv written 4 months ago by Pin.Bioinf240 • updated 4 months ago by Vitis2.1k
0
votes
0
answers
272
views
0
answers
How to interpret a read hit with IGV?
interpretation alignment mapping igv written 5 months ago by marongiu.luigi380 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
126
views
0
answers
4
votes
0
answers
377
views
0
answers
Hidden reads in IGV
read quality visualization mapping igv written 5 months ago by marongiu.luigi380 • updated 5 months ago by Santosh Anand4.7k
1
vote
2
answers
233
views
2
answers
How to load BAM files that do not have chromosome name in the header?
rna-seq igv written 5 months ago by JC0 • updated 5 months ago by WouterDeCoster38k
4
votes
1
answer
294
views
1
answer
IGV - how to show all bases in track in bash script
bam viewer igv written 5 months ago by martinov.michael10 • updated 5 months ago by Jeremy Leipzig18k
2
votes
1
answer
214
views
1
answer
What sequence has being read by IGV's 'copy sequence'
igv alignment samtools coverage read map written 5 months ago by marongiu.luigi380 • updated 5 months ago by h.mon24k
8
votes
2
answers
2.0k
views
2
answers
Extract gff of a particular chromosome
gff3 chromosome igv written 2.8 years ago by mhasa00640 • updated 6 months ago by ahmedferoz2010
0
votes
0
answers
167
views
0
answers
1
vote
3
answers
473
views
5 follow
3
answers
How to use own genome file in IGV?
genome annotation igv written 6 months ago by finswimmer11k • updated 6 months ago by Charles Warden6.6k
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