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2
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109
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5 follow
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To reassemble Illumina and PacBio, or just upgrade previous assembly with PacBio?
genome assembly pacbio illumina written 2 days ago by msobol • 10 • updated 1 day ago by colindaven • 740
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1
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606
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1
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Tool: Illumina BeadArray GTC to VCF conversion
vcf illumina gtc beadarray tool written 9 months ago by KelleyRyanM • 0 • updated 11 days ago by freeseek • 30
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3
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1.8k
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3
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Read binary Illumina GTC files (1000 genomes)
illumina omni gtc binary microarry written 2.4 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 11 days ago by freeseek • 30
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3
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1.7k
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3
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Illumina HumanOmniExpress IDAT files
illumina idat written 3.0 years ago by andrew.j.skelton73 ♦ 5.1k • updated 11 days ago by freeseek • 30
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1
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96
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1
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ROC curves from hap.py
illumina roc hap.py written 13 days ago by e.benn • 40
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1
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110
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1
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Fix per tile sequence quality?
dnaseq quality control fastqc illumina written 15 days ago by serpalma.v • 10 • updated 15 days ago by genomax ♦ 52k
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1
answer
155
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1
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Trimmomatic adapter clipping removes many reads even if "keepBothReads" parameter is selected
trimmomatic illumina adapter trimming pair-end written 6 weeks ago by al-ash • 50 • updated 16 days ago by finswimmer ♦ 3.6k
0
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0
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130
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0
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Illumina BeadChip Array probe file Vs control probe file
beadchip array illumina control probe file written 12 weeks ago by nazaninhoseinkhan • 240 • updated 17 days ago by Biostar ♦♦ 20
0
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0
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78
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0
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Illumina bead array
R illumina written 19 days ago by paul.elliot1994 • 0
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2
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105
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2
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How to demultiplex Unindexed.fastq.gz files?
illumina bcl2fastq written 21 days ago by a.rex • 110 • updated 19 days ago by genomax ♦ 52k
3
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1
answer
120
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1
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Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
illumina combine atac-seq chip-seq batch written 4 weeks ago by reskejak • 0 • updated 4 weeks ago by Devon Ryan ♦ 81k
0
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0
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124
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0
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bcl2fastq is interpreting my experiment folder structure incorrectly as MiSeq-style instead of NextSeq-style
nextseq illumina fastq bcl2fastq bcl written 5 weeks ago by ekofman • 0 • updated 5 weeks ago by h.mon ♦ 16k
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63
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merge aligned read pairs that overlap - keep the bases that match the reference
illumina paired-end written 5 weeks ago by Richard • 550
3
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1
answer
113
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1
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How to trim adapters from fastq having 8mer+8mer bar-code
illumina ngs fastq adapter barcode written 5 weeks ago by rice.researcher • 90 • updated 5 weeks ago by Devon Ryan ♦ 81k
2
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2
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5.9k
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6 follow
2
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Merging Illumina Paired End Reads
illumina paired-end merge written 5.0 years ago by vijay • 1.4k • updated 5 weeks ago by Biostar ♦♦ 20
0
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1
answer
165
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1
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Screening Illumina reads for contamination
illumina univec rna-seq written 6 weeks ago by T_18 • 10 • updated 6 weeks ago by WouterDeCoster ♦ 30k
6
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0
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228
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0
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What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
R microarray humanht-12 illumina written 7 weeks ago by Leite • 280
0
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0
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146
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0
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Viral Metagenomics Data Analysis
illumina metagenomics sequencing ray assembly written 7 weeks ago by lokraj2003 • 0
8
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1
answer
718
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5 follow
1
answer
Differential Expression of illumina microarray data
illumina microarray differential expression music written 15 months ago by paul.elliot1994 • 0 • updated 8 weeks ago by Biostar ♦♦ 20
2
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0
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183
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6 follow
0
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kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 8 weeks ago by slimane.khayi • 40
2
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1
answer
165
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7 follow
1
answer
Decision on no. and type of libraries to be generated for plant genome assembly
genome assembly library pacbio illumina written 9 weeks ago by MSM55 • 70
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1
answer
2.5k
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1
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Genotyping Infinium - Illumina
illumina scoring chip-seq written 5.5 years ago by denia.attilio • 0 • updated 8 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
133
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1
answer
Software for Quality Check of reads
reads illumina quality check prinseq written 9 weeks ago by utkarsh.sood • 30 • updated 9 weeks ago by genomax ♦ 52k
7
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3
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295
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7 follow
3
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compare SV results across samples - Manta, Delly
wgs manta delly illumina written 10 weeks ago by Richard • 550 • updated 10 weeks ago by d-cameron • 1.8k
0
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0
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132
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0
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Deriving Illumina genotypes from LRR and BAF data
illumina snp written 3 months ago by alexandre.caetano • 0 • updated 11 weeks ago by Biostar ♦♦ 20
0
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1
answer
146
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1
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Increase the kmer size in IDBA_UD?
illumina ngs idba_ud idba kmer written 11 weeks ago by mail2steff • 30 • updated 11 weeks ago by Sej Modha ♦ 3.1k
0
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1
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138
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1
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Error in `rownames<-`(`*tmp*`, value = c("2C01", "20089_R03C01", "20089_R04C01", : duplicate rownames not allowed
genome R idat files methylation illumina written 11 weeks ago by bookerbn • 0 • updated 11 weeks ago by Kevin Blighe ♦ 24k
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1
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1.4k
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1
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'Use Of Uninitialized Value' Message Using Solexaqa
illumina written 6.8 years ago by Marina Manrique • 1.3k • updated 11 weeks ago by Biostar ♦♦ 20
0
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0
answers
179
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0
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error in basespace qiime preprocessing
illumina basespace emp qiime preprocessing qiime written 4 months ago by nagpal511 • 0 • updated 11 weeks ago by Kevin Blighe ♦ 24k
0
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1
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172
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1
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Genotype analyzing of infinium illumina bead array
illumina infinium beadarray genotyping written 12 weeks ago by hasani.iut6 • 30 • updated 12 weeks ago by Kevin Blighe ♦ 24k
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