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<prev • 559 results • page 1 of 19 • next >
6
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119
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How to measure NGS depth coverage bias
illumina ngs bias sequencing depth coverage written 3 days ago by Anand Rao • 100 • updated 2 days ago by Len Trigg • 880
1
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0
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105
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0
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Recent illumina human data set with read lenght higher than 100
next generation sequencing human illumina written 9 days ago by mhkt19 • 0
0
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0
answers
140
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0
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Perform differential expression for illumina data
illumina limma differential expression written 12 days ago by Agaz Hussain Wani • 40
2
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2
answers
213
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2
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Demultiplexing fastq.gz files
illumina demultiplexing written 15 days ago by gr1 • 0 • updated 15 days ago by Istvan Albert ♦♦ 73k
1
vote
1
answer
123
views
1
answer
Demultiplexing reads with index present in the labels
rnaseq illumina demultiplex index written 18 days ago by tiago211287 • 770
7
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2
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196
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6 follow
2
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How to split a fastq file into each corresponding sample.fastq?
illumina fastq demultiplexing written 20 days ago by tiago211287 • 770 • updated 20 days ago by Dan D ♦ 6.2k
4
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2
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959
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2
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simulating illumina data with spiked variants
illumina simulated data written 3.2 years ago by Richard • 500 • updated 22 days ago by Gabriel R. • 2.0k
0
votes
1
answer
219
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1
answer
De-multiplexing Single Index BCL & Fastq reads?
illumina single-index bcl2fastq demultiplex written 23 days ago by Jon17 • 0 • updated 23 days ago by h.mon ♦ 8.7k
1
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0
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194
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0
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Interpreting coverage gaps when aligning Illumina reads against PacBio assembly
assembly alignement pacbio illumina written 29 days ago by Roxane Boyer • 310
0
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1
answer
204
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1
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Low quality of reads in reverse files toward the last bases
reads illumina quality scores written 6 weeks ago by deepti1rao • 0 • updated 6 weeks ago by Devon Ryan ♦ 70k
4
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1
answer
234
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1
answer
Interpreting pre- and post-trim_galore FastQC results
illumina adapter trimming fastqc written 8 weeks ago by Anand Rao • 100 • updated 8 weeks ago by genomax ♦ 33k
1
vote
1
answer
291
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1
answer
Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
illumina bionano dovetail denovo pacbio written 9 weeks ago by mmats010 • 40 • updated 9 weeks ago by Philipp Bayer ♦ 4.6k
0
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0
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188
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0
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Quality check for illumina GSA data
illumina snps written 12 weeks ago by xinhui.wang • 90 • updated 9 weeks ago by Biostar ♦♦ 20
7
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2
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235
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2
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Assembling a Transcriptome using Trinity with multiple Illumina Fastq files
trinity illumina rna-seq transcriptome written 10 weeks ago by Bioinformatics_finn • 0 • updated 10 weeks ago by carlopecoraro2 • 510
0
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2
answers
266
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2
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Assessing DMRs between treatment groups: subtracting control group DMRs to account for "baseline" methylation
illumina 850k dmr methylationepic written 6 months ago by Ellen O • 0 • updated 10 weeks ago by hongbo919 • 10
0
votes
1
answer
375
views
1
answer
Differential Methylation in specific groups
illumina microarray rnbeads methylation epic written 11 months ago by rasii • 0 • updated 10 weeks ago by hongbo919 • 10
0
votes
1
answer
164
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1
answer
No T base in the Illumina report file
array illumina snp written 10 weeks ago by nehal1610.ranabhatt • 0 • updated 10 weeks ago by Istvan Albert ♦♦ 73k
0
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0
answers
176
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0
answers
Error when changing the database for minfi dropLociWithSnps
methylationepic minfi illumina snp methylation written 10 weeks ago by Ellen O • 0
1
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1
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1.6k
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1
answer
Identifying Recombination Among Known Viruses With Illumina Phred Scores
illumina next-gen recombination written 4.5 years ago by mikefamulare • 0 • updated 11 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
293
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1
answer
Bismark Methyl-Seq Analysis
bisulfite sequencing methyl-seq bismark illumina written 12 weeks ago by mosharrofgeb • 10 • updated 11 weeks ago by mark.ziemann • 890
1
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0
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237
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0
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Merging raw Illumina FASTQ files with snakemake
illumina paired-end reads snakemake written 11 weeks ago by Jokhe • 40
1
vote
1
answer
192
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1
answer
The same Illumina expression data gathered by GEOquery and direct download shows different value after normalization?
preprosessing illumina normalization written 12 weeks ago by BioMed • 40 • updated 12 weeks ago by andrew.j.skelton73 • 3.7k
5
votes
1
answer
206
views
1
answer
Is there any tool to convert a contig to illumina reads?
assembly contigs illumina written 3 months ago by m.koohi.m • 70
11
votes
0
answers
794
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6 follow
0
answers
Tool: Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias
quality filtering filterbytile bbmap tool illumina written 9 months ago by Brian Bushnell ♦ 14k
2
votes
0
answers
175
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0
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What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 3 months ago by Vijay Lakhujani • 1.2k
3
votes
1
answer
303
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1
answer
Can I use a gpu to demultiplex with bcl2fastq?
illumina gpu bcl2fastq demultiplex written 3 months ago by diltsjeri • 400 • updated 3 months ago by Devon Ryan ♦ 70k
0
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1
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1.2k
views
1
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can anyone give some example codes to remove primer sequence from MiSeq PCR amplicon sequences
illumina trimming miseq written 22 months ago by yiangulo • 0 • updated 3 months ago by WouterDeCoster ♦ 21k
0
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1
answer
191
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1
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use proovread to correct Pacbio reads with Illumina reads
proovread illumina pacbio correction written 3 months ago by shuchen • 10
2
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0
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1.2k
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5 follow
0
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QIIME - Illumina MiSeq, Paired-end Data - Mapping file and Data Preprocessing Questions
illumina 16s qiime written 9 months ago by sarajeanne08 • 10 • updated 3 months ago by bioxujintian • 0
6
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1
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168
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5 follow
1
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How are distances between clusters in Illumina sequencing (resp. bridge PCR) achieved?
illumina sequencing written 4 months ago by jirkanov • 0 • updated 4 months ago by Devon Ryan ♦ 70k
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