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<prev • 728 results • page 1 of 25 • next >
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Trim NEBnext Adapters with trimmomatic - Same as TruSeq adapters?
genome illumina quality check next-gen raw reads written 2 days ago by alexgoro13 • 0
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Does Nextera Transposase adapter sequence affects GATK HaplotypeCaller pipeline?
gatk ngs snp rna-seq illumina written 3 days ago by Susmita Mandal • 60
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Problem on mapping SNP ID
illumina snp written 13 days ago by cerriguglielmo • 0
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Picard MarkDuplicates tool on a pooled sample BAM
illumina picard markduplicates written 14 days ago by joneill4x • 60
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98
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Multiple N bases in RNAseq
illumina rna-seq written 24 days ago by jgarces • 10
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5 follow
1
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Skewed beta-distribution from Methylation EPIC array data
metylation epic illumina champ written 26 days ago by erwin.tomasich • 0 • updated 25 days ago by Charles Warden ♦ 7.6k
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Help with bowtie2 aligning PE Radseq sequences to reference genome
genome bowtie2 radseq mapping illumina written 5 weeks ago by imda • 10
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1
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How to report coverage at overlapping regions of paired-end reads?
illumina paired-end written 6 weeks ago by francois • 10 • updated 5 weeks ago by h.mon ♦ 29k
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149
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How to process data from Illumina sequencing ?
genome trimmomatic data illumina sequencing written 5 weeks ago by vicslab • 0 • updated 5 weeks ago by Michael Dondrup ♦ 47k
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146
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Example NGS data
illumina fastq next-gen cutadapt written 6 weeks ago by ksgajula • 0 • updated 6 weeks ago by devarora • 70
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Illumina WES intervals file for coverage analysis?
illumina written 7 weeks ago by vctrm67 • 10 • updated 7 weeks ago by trausch • 1.4k
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How to remove illumina PCR primer 2.01 from RNA-seq samples
illumina rna-seq written 4.3 years ago by Grinch • 70 • updated 7 weeks ago by adi.rotem • 0
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How Reliable Are Statistics Derived From "Subsampling" Of Paired-End Illumina Reads ?
illumina written 7.4 years ago by thecuriousbiologist • 480 • updated 7 weeks ago by Biostar ♦♦ 20
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Illumina Manifest files - A1 vs. A2
illumina manifest_file genotyping written 23 months ago by rednalf • 60 • updated 7 weeks ago by freeseek • 40
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Automate Illumina GenomeStudio With Python Script
python automation illumina snp genomestudio written 3.7 years ago by travis.m.couture • 30 • updated 8 weeks ago by freeseek • 40
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Are there any GenomeStudio alternatives to process Illumina genotyping array?
illumina genotyping array genomestudio written 6 months ago by Zhenyu Zhang • 260 • updated 8 weeks ago by freeseek • 40
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3
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Recalling SNPs count from Illumina SNP array raw data
illumina snp written 4.0 years ago by nadne • 40 • updated 8 weeks ago by freeseek • 40
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how to use idat file for analyses in bioconductor
illumina idatfile microarray written 4.0 years ago by Kritika • 260 • updated 8 weeks ago by freeseek • 40
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genotyping according to the red/green intensity for illumina microarray?
intensity idat microarray illumina written 3.0 years ago by jmzeng1314 • 90 • updated 8 weeks ago by freeseek • 40
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118
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Non-zero chrY CpG sites in female samples
illumina dnam methylation gender sex written 8 weeks ago by lotus28 • 70
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How to remove spike ins from illumina beadchip data
ercc illumina limma microarray beadchip written 8 weeks ago by maria2019 • 90 • updated 8 weeks ago by Kevin Blighe ♦ 55k
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Aligning metagenomic reads (OTU representatives) to my phylogenetic tree ~AND~ evaluating how multiple samples align
phylogeny illumina metagenomics written 2.8 years ago by seccon • 0 • updated 9 weeks ago by Biostar ♦♦ 20
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Recent illumina human data set with read length higher than 100
next generation sequencing human illumina written 2.4 years ago by mhkt19 • 0 • updated 9 weeks ago by lieven.sterck ♦ 6.9k
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165
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ctDNA WES duplication rates from NovaSeq 6000 and HiSeq 4000
novaseq illumina wes sequencing written 10 weeks ago by graeme.thorn • 40
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6 follow
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Insert Size For Illumina Gaiix Paired-End Library From Sam/Bam File
illumina next-gen sam bam written 7.5 years ago by bioinfo • 740 • updated 10 weeks ago by Gabriel R. • 2.7k
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Normalizing gene counts in a quantitative metagenomic DNAseq analysis
illumina dna-seq count depth written 12 weeks ago by allerdrengen55 • 20
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186
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UMI on the fastq header
illumina umi fastq umi-tools rna-seq written 12 weeks ago by Ati • 30
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215
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5 follow
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Concatenate fastq files before or after trimming?
illumina fastq concatenate trimgalore written 3 months ago by emb13 • 0 • updated 3 months ago by sklages • 90
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How to create Illumina sample sheet file for single index data?
novaseq illumina single bcl2fastq index written 3 months ago by lakhujanivijay ♦ 4.8k • updated 3 months ago by genomax ♦ 78k
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Split Fastq files
illumina fastq written 3 months ago by bsmith030465 • 150
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