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<prev • 141 results • page 1 of 5 • next >
6
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1
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167
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6 follow
1
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How to fix this strand flips for Michigan Imputation Server?
imputation snp written 27 days ago by Sharon • 380 • updated 27 days ago by Shicheng Guo • 7.3k
0
votes
0
answers
117
views
0
answers
UK biobank HLA imputation data
hla uk biobank imputation written 29 days ago by aleph9999 • 0
1
vote
3
answers
335
views
3
answers
Single Cell RNAseq Imputation in Seurat
imputation rna-seq single cell written 12 weeks ago by bioinformatics.cancer • 180 • updated 4 weeks ago by kristoffer.vittingseerup • 1.0k
0
votes
0
answers
125
views
0
answers
How to get "best guess" genotypes after running Beagle 4.1
imputation beagle written 6 weeks ago by vmuir • 0
0
votes
1
answer
136
views
1
answer
Beagle VCF header issue
imputation snp beagle written 7 weeks ago by vmuir • 0
2
votes
1
answer
140
views
1
answer
Rare variants imputation
imputation sequencing written 8 weeks ago by reds.nik • 40 • updated 7 weeks ago by Kevin Blighe ♦ 33k
0
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0
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118
views
0
answers
Sanger imputation assigns some empty SNP IDs, Is this normal?
vcf sanger imputation written 7 weeks ago by rshoobs • 0
0
votes
1
answer
157
views
1
answer
Run of homozigosity on multiple imputed chips
roh imputation snp written 4 months ago by giovanni.birolo • 0 • updated 12 weeks ago by Kevin Blighe ♦ 33k
1
vote
1
answer
199
views
1
answer
Preference about IMPUTATION TOOL
snps imputation tool written 3 months ago by wonseok.cchoi • 0 • updated 12 weeks ago by thassia.carratto • 10
2
votes
1
answer
264
views
1
answer
How is imputation r2 calculated in minimac3?
imputation minimac3 gwas written 12 weeks ago by cityofwisdom • 10 • updated 12 weeks ago by zx8754 ♦ 6.1k
2
votes
2
answers
3.1k
views
2
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Generating .ped and .map files from .dose.vcf.gz files
gwas open imputation written 2.8 years ago by Diego.Morales • 10 • updated 3 months ago by RamRS ♦ 19k
0
votes
1
answer
249
views
1
answer
Recoding bim to vcf file with forcing allele-A1
imputation genetics plink written 3 months ago by marcus.tutert • 0 • updated 3 months ago by Kevin Blighe ♦ 33k
4
votes
0
answers
425
views
0
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Help with Sanger Imputation Service
variant calling imputation rna-seq written 3 months ago by sandKings • 10
0
votes
0
answers
181
views
0
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Negative values for imputed genotypes on X chromsomes in females
x chromosome X imputation genotypes written 5 months ago by Caragh • 40 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
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267
views
0
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Low SNP imputation concordance - except chromosome 1
impute2 imputation plink snp gwas written 3 months ago by muraved • 10
6
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5
answers
4.7k
views
5
answers
Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.4 years ago by mmagoo6 • 50 • updated 3 months ago by natalia.han • 0
0
votes
0
answers
172
views
0
answers
Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
imputation liftover written 4 months ago by bg1116 • 0
0
votes
0
answers
179
views
0
answers
Eagle error: Haploid genotype found
gwas next-gen imputation snp written 4 months ago by myses030566 • 0
0
votes
0
answers
258
views
0
answers
GWAS imputation and quality control
gwas snp array qc snp imputation written 4 months ago by a95087a8d7 • 0
0
votes
0
answers
214
views
0
answers
Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan snp genotype written 4 months ago by Volka • 30
18
votes
4
answers
12k
views
7 follow
4
answers
Converting between Impute2 and Ped/Map after imputation - 1st column dashes (--) problem
imputation plink written 6.8 years ago by Philip Robinson • 40 • updated 5 months ago by zx8754 ♦ 6.1k
0
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0
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319
views
0
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Best way to impute GWAS summary statistics
gwas imputation summary statistics genotyping written 5 months ago by gradstudentNew • 10
0
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0
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723
views
0
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Ref and Alt switch after imputation
vcf ref alt imputation written 2.3 years ago by sxl919 • 10 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
249
views
0
answers
From read counts to genotypes, or even better, a vcf
vcf read counts imputation genotype written 6 months ago by Joanna.ilska • 0
0
votes
1
answer
265
views
1
answer
Are there needs to perform imputation for genotype generated from WGS ?
wgs imputation written 6 months ago by hxlei613 • 80 • updated 6 months ago by YaGalbi • 1.4k
1
vote
0
answers
261
views
0
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Genotype representation with 0, 1, 2 - what do they mean?
representation imputation genotype phasing gwas written 6 months ago by Volka • 30
1
vote
1
answer
879
views
5 follow
1
answer
How to filter Michigan genotype imputation results
gwas rsq qc imputation written 8 months ago by robjohn70000 • 120 • updated 6 months ago by GK1610 • 40
3
votes
0
answers
1.6k
views
0
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How To Create The .Legend And .Phase Files For Gwas Imputation When Using Mach
gwas imputation plink written 5.4 years ago by mandar.bobade60 • 80 • updated 8 months ago by moushengxu • 360
3
votes
0
answers
2.2k
views
0
answers
BEAGLE 4.1 imputation
beagle imputation genotyping written 2.6 years ago by cholingken • 20 • updated 8 months ago by johnnythejota • 0
0
votes
0
answers
481
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0
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Beagle 4.1: Imputation - Error - ERROR: invalid ALT allele
imputation snp written 8 months ago by Bioinformatics_NewComer • 320 • updated 8 months ago by Biostar ♦♦ 20
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