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<prev • 135 results • page 1 of 5 • next >
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Run of homozigosity on multiple imputed chips
roh imputation snp written 10 weeks ago by giovanni.birolo • 0 • updated 25 days ago by Kevin Blighe ♦ 30k
1
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1
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147
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1
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Preference about IMPUTATION TOOL
snps imputation tool written 4 weeks ago by wonseok.cchoi • 0 • updated 26 days ago by thassia.carratto • 10
2
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1
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110
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1
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How is imputation r2 calculated in minimac3?
imputation minimac3 gwas written 27 days ago by cityofwisdom • 10 • updated 26 days ago by zx8754 ♦ 5.3k
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112
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1
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Single Cell RNAseq Imputation in Seurat
imputation rna-seq single cell written 27 days ago by bioinformatics.cancer • 180 • updated 27 days ago by Charles Warden ♦ 5.4k
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2.9k
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Generating .ped and .map files from .dose.vcf.gz files
gwas open imputation written 2.6 years ago by Diego.Morales • 10 • updated 4 weeks ago by RamRS ♦ 18k
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Recoding bim to vcf file with forcing allele-A1
imputation genetics plink written 6 weeks ago by marcus.tutert • 0 • updated 5 weeks ago by Kevin Blighe ♦ 30k
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292
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Help with Sanger Imputation Service
variant calling imputation rna-seq written 6 weeks ago by sandKings • 10
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135
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Negative values for imputed genotypes on X chromsomes in females
x chromosome X imputation genotypes written 3 months ago by Caragh • 40 • updated 5 weeks ago by Biostar ♦♦ 20
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207
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Low SNP imputation concordance - except chromosome 1
impute2 imputation plink snp gwas written 7 weeks ago by muraved • 0
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.2 years ago by mmagoo6 • 50 • updated 7 weeks ago by natalia.han • 0
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117
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Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
imputation liftover written 8 weeks ago by bg1116 • 0
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130
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Eagle error: Haploid genotype found
gwas next-gen imputation snp written 8 weeks ago by myses030566 • 0
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152
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GWAS imputation and quality control
gwas snp array qc snp imputation written 10 weeks ago by a95087a8d7 • 0
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142
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Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan snp genotype written 12 weeks ago by Volka • 30
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4
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11k
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7 follow
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Converting between Impute2 and Ped/Map after imputation - 1st column dashes (--) problem
imputation plink written 6.6 years ago by Philip Robinson • 40 • updated 3 months ago by zx8754 ♦ 5.3k
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244
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Best way to impute GWAS summary statistics
gwas imputation summary statistics genotyping written 3 months ago by gradstudentNew • 10
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678
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Ref and Alt switch after imputation
vcf ref alt imputation written 2.1 years ago by sxl919 • 10 • updated 3 months ago by Biostar ♦♦ 20
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198
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From read counts to genotypes, or even better, a vcf
vcf read counts imputation genotype written 4 months ago by Joanna.ilska • 0
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224
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1
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Are there needs to perform imputation for genotype generated from WGS ?
wgs imputation written 4 months ago by hxlei613 • 80 • updated 4 months ago by YaGalbi • 1.3k
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205
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Genotype representation with 0, 1, 2 - what do they mean?
representation imputation genotype phasing gwas written 4 months ago by Volka • 30
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657
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1
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How to filter Michigan genotype imputation results
gwas rsq qc imputation written 6 months ago by robjohn70000 • 110 • updated 4 months ago by GK1610 • 40
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How To Create The .Legend And .Phase Files For Gwas Imputation When Using Mach
gwas imputation plink written 5.2 years ago by mandar.bobade60 • 80 • updated 5 months ago by moushengxu • 340
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BEAGLE 4.1 imputation
beagle imputation genotyping written 2.4 years ago by cholingken • 20 • updated 6 months ago by johnnythejota • 0
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383
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Beagle 4.1: Imputation - Error - ERROR: invalid ALT allele
imputation snp written 6 months ago by Bioinformatics_NewComer • 310 • updated 6 months ago by Biostar ♦♦ 20
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2
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5 follow
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problem with chromosomes in michigan imputation server
imputation michigan server written 15 months ago by jfertaj • 70 • updated 6 months ago by mgru • 10
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555
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Extracting imputation (INFO) quality scores for specific SNPs from VCF files
imputation genotype written 6 months ago by e.jabbari • 0
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2
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424
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5 follow
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Can you assume variants not in VCF are all monomorphic for the reference allele?
vcf variant calling imputation missing variants written 7 months ago by wangdavid758 • 20 • updated 7 months ago by Pierre Lindenbaum ♦ 112k
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450
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 7 months ago by JSEM • 20
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Dosage data single probability to PLINK format
imputation written 22 months ago by smb2174 • 0 • updated 7 months ago by chrchang523 ♦ 3.9k
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Interpreting phased data from Beagle
haplotype imputation genotype phasing beagle written 7 months ago by chadapohn.chaosrikul • 0
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