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<prev • 144 results • page 1 of 5 • next >
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 11 months ago by JSEM • 20 • updated 1 day ago by GK1610 • 50
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votes
0
answers
191
views
0
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Beagle 4.1 imputation
imputation written 7 weeks ago by cetin.m • 20 • updated 5 weeks ago by Biostar ♦♦ 20
1
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1
answer
248
views
1
answer
UK biobank HLA imputation data
hla uk biobank imputation written 3 months ago by aleph9999 • 10 • updated 5 weeks ago by matemanc • 0
0
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0
answers
73
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0
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Beagle permanent file
imputation beagle written 6 weeks ago by cetin.m • 20
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0
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168
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0
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Genotyped SNPs were lost after michigan imputation server imputation and phasing
imputation michigan phasing written 9 weeks ago by Shicheng Guo • 7.4k
6
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1
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442
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6 follow
1
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How to fix this strand flips for Michigan Imputation Server?
imputation snp written 3 months ago by Sharon • 410 • updated 3 months ago by Shicheng Guo • 7.4k
1
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3
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614
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3
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Single Cell RNAseq Imputation in Seurat
imputation rna-seq single cell written 5 months ago by bioinformatics.cancer • 180 • updated 3 months ago by kristoffer.vittingseerup • 1.4k
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0
answers
202
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0
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How to get "best guess" genotypes after running Beagle 4.1
imputation beagle written 3 months ago by vmuir • 0
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1
answer
210
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1
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Beagle VCF header issue
imputation snp beagle written 4 months ago by vmuir • 0
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1
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208
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1
answer
Rare variants imputation
imputation sequencing written 4 months ago by reds.nik • 40 • updated 4 months ago by Kevin Blighe ♦ 37k
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0
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170
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0
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Sanger imputation assigns some empty SNP IDs, Is this normal?
vcf sanger imputation written 4 months ago by rshoobs • 0
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1
answer
195
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1
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Run of homozigosity on multiple imputed chips
roh imputation snp written 6 months ago by giovanni.birolo • 0 • updated 5 months ago by Kevin Blighe ♦ 37k
1
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1
answer
264
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1
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Preference about IMPUTATION TOOL
snps imputation tool written 5 months ago by wonseok.cchoi • 0 • updated 5 months ago by thassia.carratto • 10
2
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1
answer
421
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1
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How is imputation r2 calculated in minimac3?
imputation minimac3 gwas written 5 months ago by cityofwisdom • 10 • updated 5 months ago by zx8754 ♦ 6.6k
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3.3k
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2
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Generating .ped and .map files from .dose.vcf.gz files
gwas open imputation written 3.0 years ago by Diego.Morales • 10 • updated 5 months ago by RamRS ♦ 20k
0
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1
answer
354
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1
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Recoding bim to vcf file with forcing allele-A1
imputation genetics plink written 5 months ago by marcus.tutert • 0 • updated 5 months ago by Kevin Blighe ♦ 37k
4
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0
answers
557
views
0
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Help with Sanger Imputation Service
variant calling imputation rna-seq written 5 months ago by sandKings • 10
0
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0
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232
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0
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Negative values for imputed genotypes on X chromsomes in females
x chromosome X imputation genotypes written 7 months ago by Caragh • 40 • updated 5 months ago by Biostar ♦♦ 20
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0
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341
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0
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Low SNP imputation concordance - except chromosome 1
impute2 imputation plink snp gwas written 6 months ago by muraved • 10
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5
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5.1k
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5
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.5 years ago by mmagoo6 • 50 • updated 6 months ago by natalia.han • 0
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0
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209
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0
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Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
imputation liftover written 6 months ago by bg1116 • 0
0
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0
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230
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0
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Eagle error: Haploid genotype found
gwas next-gen imputation snp written 6 months ago by myses030566 • 0
0
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0
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409
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0
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GWAS imputation and quality control
gwas snp array qc snp imputation written 6 months ago by a95087a8d7 • 0
0
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0
answers
267
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0
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Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan snp genotype written 7 months ago by Volka • 30
18
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4
answers
12k
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7 follow
4
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Converting between Impute2 and Ped/Map after imputation - 1st column dashes (--) problem
imputation plink written 7.0 years ago by Philip Robinson • 40 • updated 7 months ago by zx8754 ♦ 6.6k
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389
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0
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Best way to impute GWAS summary statistics
gwas imputation summary statistics genotyping written 8 months ago by gradstudentNew • 10
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0
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780
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0
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Ref and Alt switch after imputation
vcf ref alt imputation written 2.5 years ago by sxl919 • 10 • updated 8 months ago by Biostar ♦♦ 20
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0
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306
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0
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From read counts to genotypes, or even better, a vcf
vcf read counts imputation genotype written 8 months ago by Joanna.ilska • 0
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1
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337
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1
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Are there needs to perform imputation for genotype generated from WGS ?
wgs imputation written 8 months ago by hxlei613 • 80 • updated 8 months ago by YaGalbi • 1.4k
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0
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349
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0
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Genotype representation with 0, 1, 2 - what do they mean?
representation imputation genotype phasing gwas written 8 months ago by Volka • 30
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