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<prev • 173 results • page 1 of 6 • next >
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IMPUTE2 variable question
vcf impute2 imputation written 4 days ago by raalsuwaidi • 0 • updated 4 days ago by Kevin Blighe ♦ 56k
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preparing files for imputation on Michigan Imputation Server
hrc imputation michigan imputation server written 5 days ago by anamaria • 90
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72
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Michigan Imputation Server - typed-only sites?
vcf imputation michigan snp genotyping written 4 weeks ago by Volka • 70
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1
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5 follow
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Tool: Gencove Open and free API. Any DNA data from any type to VCF in 10 to 30 mins.
vcf api imputation tool written 2.5 years ago by maria.vazquez • 20 • updated 6 weeks ago by Charles Warden ♦ 7.6k
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85
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None of the variants updated from hg18 to 19
liftover imputation plink genomebuild written 6 weeks ago by NS • 0
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3.0k
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Beagle imputation results quality control
vcf imputation beagle written 4.8 years ago by eyb • 180 • updated 6 weeks ago by zx8754 ♦ 9.1k
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95
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QC after imputation
qc imputation snp written 6 weeks ago by aurina.arnatk • 0
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149
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The genotype imputation in Beagle always stop on specific step and can not finish the imputation file
imputation genotype beagle written 7 weeks ago by r00628112 • 10 • updated 7 weeks ago by Kevin Blighe ♦ 56k
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BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 2.2 years ago by Ryan O • 0 • updated 7 weeks ago by zx8754 ♦ 9.1k
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About beagle imputation
imputation beagle written 7 weeks ago by r00628112 • 10 • updated 7 weeks ago by ATpoint ♦ 32k
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Imputing specific SNPs using Beagle5.1
imputation beagle written 8 weeks ago by Vivek • 2.4k
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3.2k
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Can not pass QC when doing imputation with Michigan Imputation Serve and Haplotype Reference Consortium panels
hrc 23andme imputation genotype written 4.2 years ago by FAST_GENOME • 50 • updated 11 weeks ago by fabiotakeosato • 0
0
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Invalid allele error when attempting to run Beagle 5.0 splitvcf
vcf imputation beagle written 3 months ago by nadietz • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 127k
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is it .impute2 format equal to .gen format
impute2 imputation qctool written 2.7 years ago by Peter Chung • 90 • updated 4 months ago by Kevin Blighe ♦ 56k
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121
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Merged Reference Panel using WES data
imputation reference sequencing written 5 months ago by shamav523 • 0
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how to merge genetic map of ChrX nonPAR with PAR1 and PAR2 for imputation?
imputation plink beagle written 5 months ago by nchuang • 210
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141
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How to decide method for imputing the missing genotype in a VCF
shapeit impute2 imputation beagle written 5 months ago by nchuang • 210
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439
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Haplotype phasing and imputation in Beagle 5.1
imputation beagle rehh haplotype phasing written 5 months ago by kas • 0
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3
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954
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3
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Beagle VCF header issue
imputation snp beagle written 17 months ago by vmuir • 0 • updated 6 months ago by 530234493 • 0
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3
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6 follow
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UK biobank HLA imputation data
hla uk biobank imputation written 16 months ago by aleph9999 • 10 • updated 6 months ago by ochaz • 0
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175
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Imputation of X chromosome non-PAR for male subjects
imputation snp x chromsoome written 6 months ago by Apprentice • 30
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204
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Why does genotype data change after genetic imputation?
imputation genotype written 7 months ago by iamselewa • 0
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227
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1
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Removing SNPs with the count allele in 5 (insertion), 6 (deletion) or 7(allele from a reference panel)
gwas imputation plink snp unix written 8 months ago by jongyun.jung • 10 • updated 8 months ago by Pierre Lindenbaum ♦ 127k
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432
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convert .dose.gz and .info.gz files to plink binary format (.bim, .fam, .bed)
dose imputation plink info written 8 months ago by jongyun.jung • 10
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330
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1
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Whats the point of genotype pruning before imputation?
imputation plink r2 --indep-pariwise written 8 months ago by optimistsso4co3 • 10
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253
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fcGENE error during conversion from .ped to .gen
fcgene format conversion imputation written 9 months ago by pifferdavide • 100
1
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1
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203
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1
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Read .sample file (file format available in plink) as a dataframe in pandas
pandas imputation plink written 9 months ago by datainterns • 10 • updated 9 months ago by bari.ballew • 210
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405
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Imputation of scRNA-seq data
scrna-seq imputation rna-seq written 9 months ago by mariafirulevabio • 40
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328
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How to use minimac3 to impute genotypes from a SNPmatrix dataset
genome imputation sequencing written 9 months ago by caesar_etos • 0
3
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1
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411
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1
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IMPUTE2- Map file for custom reference panel
impute2 reference panel imputation written 10 months ago by john.michel.rouhana • 10 • updated 10 months ago by h.mon ♦ 29k
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