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- C: logCPM error in RStudio.
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Recent Replies
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C: fastqc fails only in my directory - not my coworkers by
bioinfo_cat • 0
That would make a lot of sense - I am contacting server support to ask to have a reinstallation d...
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C: logCPM error in RStudio. by
far.zi • 0
Those are "Mirtron" reads. I'll also check the manual again. Thank you :)
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C: fastqc fails only in my directory - not my coworkers by
genomax ♦ 89k
Are you running into this issue on the same server or a different server? See the solution [pos...
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C: testing set for RNA-seq AML by
newbio17 • 230
Your TCGA expression data was probably generated using GDC workflow for RNA-Seq. You should be ab...
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C: testing set for RNA-seq AML by
Kevin Blighe ♦ 65k
If the model that you have developed is 'robust' (yes, that magic word again...), then it should ...
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C: Heatmap for protein abundance. by
Kevin Blighe ♦ 65k
The heatmap is usually generated on the transformed expression values (usually logged values and ...
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C: logCPM error in RStudio. by
ATpoint ♦ 38k
That is a very low gene number, so this is no normal RNA-seq, right? Yes, raw counts, I suggest y...
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A: What does it mean to calculate genomic control (lambda) at 10th percentile for G by
Kevin Blighe ♦ 65k
I also provided an associated answer here: https://www.biostars.org/p/298847/ The 'percentile' p...
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C: logCPM error in RStudio. by
far.zi • 0
OMG, I thought I need the norm counts. The total is 478.
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C: Chia-pipe cannot find the module pigz by
bioinfo89 • 40
Yes I resolved it. Thanks!
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C: logCPM error in RStudio. by
ATpoint ♦ 38k
That is not correct. Please read the manual. You must start from raw counts. There are also very ...
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C: kegg enrichment and pathway analysis by
MEITUO • 10
hi! the input file of DAVID is a gene list, is the gene list in the emapper.annotations file? o...
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