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<prev • 160 results • page 1 of 6 • next >
0
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661
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Beagle VCF header issue
imputation snp beagle written 11 months ago by vmuir • 0 • updated 6 days ago by 530234493 • 0
2
votes
3
answers
691
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6 follow
3
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UK biobank HLA imputation data
hla uk biobank imputation written 11 months ago by aleph9999 • 10 • updated 14 days ago by ochaz • 0
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0
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65
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0
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Imputation of X chromosome non-PAR for male subjects
imputation snp x chromsoome written 29 days ago by Apprentice • 30
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0
answers
79
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0
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Why does genotype data change after genetic imputation?
imputation genotype written 6 weeks ago by iamselewa • 0
1
vote
1
answer
135
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1
answer
Removing SNPs with the count allele in 5 (insertion), 6 (deletion) or 7(allele from a reference panel)
gwas imputation plink snp unix written 11 weeks ago by jongyun.jung • 10 • updated 11 weeks ago by Pierre Lindenbaum ♦ 123k
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0
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228
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convert .dose.gz and .info.gz files to plink binary format (.bim, .fam, .bed)
dose imputation plink info written 12 weeks ago by jongyun.jung • 10
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1
answer
183
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1
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Whats the point of genotype pruning before imputation?
imputation plink r2 --indep-pariwise written 3 months ago by optimistsso4co3 • 10
1
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0
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145
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0
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fcGENE error during conversion from .ped to .gen
fcgene format conversion imputation written 3 months ago by pifferdavide • 100
1
vote
1
answer
114
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1
answer
Read .sample file (file format available in plink) as a dataframe in pandas
pandas imputation plink written 3 months ago by datainterns • 10 • updated 3 months ago by bari.ballew • 190
1
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0
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211
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0
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Imputation of scRNA-seq data
scrna-seq imputation rna-seq written 3 months ago by mariafirulevabio • 40
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0
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194
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0
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How to use minimac3 to impute genotypes from a SNPmatrix dataset
genome imputation sequencing written 4 months ago by caesar_etos • 0
3
votes
1
answer
203
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1
answer
IMPUTE2- Map file for custom reference panel
impute2 reference panel imputation written 4 months ago by john.michel.rouhana • 10 • updated 4 months ago by h.mon ♦ 27k
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0
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175
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Convert MACH (imputation) file formats to .gen file format
gen mldose mlinfo imputation written 4 months ago by anamaria • 60
0
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1
answer
237
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1
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Memory error during imputation of full genome data for multiple samples
imputation snp beagle written 4 months ago by waqaskhokhar999 • 80 • updated 4 months ago by ociramoi • 0
1
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3
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1.2k
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3
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 19 months ago by JSEM • 20 • updated 5 months ago by seta • 1.2k
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0
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211
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0
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Imputating individual haplotype phase w/o Plink
haplotypes imputation genetics plink beagle written 6 months ago by los • 0
0
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0
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225
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0
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How to convert DS value for chrX non-PAR SNPs in male
imputation snp chrx par written 6 months ago by Apprentice • 30
1
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0
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307
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0
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Michigan imputation server quality control failed
imputation genotype written 6 months ago by Phoenix Mu • 10
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1
answer
2.5k
views
1
answer
Beagle imputation results quality control
vcf imputation beagle written 4.3 years ago by eyb • 180 • updated 7 months ago by Kevin Blighe ♦ 49k
2
votes
1
answer
585
views
1
answer
Quality control after genotype imputation
imputation written 7 months ago by jzannatun • 0
0
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0
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505
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0
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Beagle 4.1 imputation
imputation written 9 months ago by cetin.m • 30 • updated 9 months ago by Biostar ♦♦ 20
0
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0
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198
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0
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Beagle permanent file
imputation beagle written 9 months ago by cetin.m • 30
0
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0
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363
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0
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Genotyped SNPs were lost after michigan imputation server imputation and phasing
imputation michigan phasing written 9 months ago by Shicheng Guo • 7.8k
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1
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1.3k
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9 follow
1
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How to fix this strand flips for Michigan Imputation Server?
imputation snp written 10 months ago by Sharon • 440 • updated 10 months ago by Shicheng Guo • 7.8k
6
votes
3
answers
1.5k
views
3
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Single Cell RNAseq Imputation in Seurat
imputation rna-seq single cell written 13 months ago by bioinformatics.cancer • 180 • updated 11 months ago by kristoffer.vittingseerup • 2.4k
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0
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406
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0
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How to get "best guess" genotypes after running Beagle 4.1
imputation beagle written 11 months ago by vmuir • 0
2
votes
1
answer
459
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1
answer
Rare variants imputation
imputation sequencing written 12 months ago by reds.nik • 40 • updated 11 months ago by Kevin Blighe ♦ 49k
0
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0
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299
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0
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Sanger imputation assigns some empty SNP IDs, Is this normal?
vcf sanger imputation written 11 months ago by rshoobs • 0
0
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1
answer
346
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1
answer
Run of homozigosity on multiple imputed chips
roh imputation snp written 14 months ago by giovanni.birolo • 0 • updated 12 months ago by Kevin Blighe ♦ 49k
1
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1
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443
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1
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Preference about IMPUTATION TOOL
snps imputation tool written 13 months ago by wonseok.cchoi • 0 • updated 12 months ago by thassia.carratto • 10
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