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<prev • 129 results • page 1 of 5 • next >
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Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
imputation liftover written 4 days ago by bg1116 • 0
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70
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Eagle error: Haploid genotype found
gwas next-gen imputation snp written 4 days ago by myses030566 • 0
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Run of homozigosity on multiple imputed chips
roh imputation snp written 12 days ago by giovanni.birolo • 0
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74
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GWAS imputation and quality control
gwas snp array qc snp imputation written 13 days ago by a95087a8d7 • 0
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Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan snp genotype written 27 days ago by Volka • 10
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Negative values for imputed genotypes on X chromsomes in females
x chromosome X imputation genotypes written 4 weeks ago by Caragh • 40
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7 follow
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Converting between Impute2 and Ped/Map after imputation - 1st column dashes (--) problem
imputation plink written 6.5 years ago by Philip Robinson • 40 • updated 5 weeks ago by zx8754 ♦ 4.8k
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Best way to impute GWAS summary statistics
gwas imputation summary statistics genotyping written 8 weeks ago by gradstudentNew • 10
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Ref and Alt switch after imputation
vcf ref alt imputation written 23 months ago by sxl919 • 10 • updated 8 weeks ago by Biostar ♦♦ 20
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143
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From read counts to genotypes, or even better, a vcf
vcf read counts imputation genotype written 11 weeks ago by Joanna.ilska • 0
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167
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Are there needs to perform imputation for genotype generated from WGS ?
wgs imputation written 11 weeks ago by hxlei613 • 80 • updated 11 weeks ago by YaGalbi • 1.3k
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147
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Genotype representation with 0, 1, 2 - what do they mean?
representation imputation genotype phasing gwas written 11 weeks ago by Volka • 10
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410
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How to filter Michigan genotype imputation results
gwas rsq qc imputation written 4 months ago by robjohn70000 • 110 • updated 11 weeks ago by GK1610 • 40
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How To Create The .Legend And .Phase Files For Gwas Imputation When Using Mach
gwas imputation plink written 5.0 years ago by mandar.bobade60 • 80 • updated 4 months ago by moushengxu • 310
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BEAGLE 4.1 imputation
beagle imputation genotyping written 2.3 years ago by cholingken • 20 • updated 4 months ago by johnnythejota • 0
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Beagle 4.1: Imputation - Error - ERROR: invalid ALT allele
imputation snp written 4 months ago by Bioinformatics_NewComer • 310 • updated 4 months ago by Biostar ♦♦ 20
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5 follow
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problem with chromosomes in michigan imputation server
imputation michigan server written 13 months ago by jfertaj • 70 • updated 4 months ago by mgru • 0
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Extracting imputation (INFO) quality scores for specific SNPs from VCF files
imputation genotype written 4 months ago by e.jabbari • 0
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5 follow
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Can you assume variants not in VCF are all monomorphic for the reference allele?
vcf variant calling imputation missing variants written 5 months ago by wangdavid758 • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 111k
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 5 months ago by JSEM • 20
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Dosage data single probability to PLINK format
imputation written 20 months ago by smb2174 • 0 • updated 5 months ago by chrchang523 ♦ 3.7k
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Interpreting phased data from Beagle
haplotype imputation genotype phasing beagle written 5 months ago by chadapohn.chaosrikul • 0
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(resolved) BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 7 months ago by Ryan O • 0 • updated 6 months ago by Ram ♦ 17k
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1
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628
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Minimac3 VCF to .gen and .sample format
imputation minimac3 snp .gen written 7 months ago by Caragh • 40 • updated 7 months ago by chrchang523 ♦ 3.7k
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549
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From Impute2 to PLINK: when to merge chromosome files?
impute2 imputation plink gwas written 7 months ago by whit18 • 10 • updated 7 months ago by Wietje • 150
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Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 2.7 years ago by ngsgene • 350 • updated 8 months ago by Kevin Blighe ♦ 26k
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538
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6 follow
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Custom Reference panel creation for data imputation from .vcf files
reference panel imputation written 8 months ago by David_emir • 290 • updated 8 months ago by Kevin Blighe ♦ 26k
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imputation and changing genotypes in Beagle and FImpute
beagle 4.0 fimpute imputation genotypes written 8 months ago by Wietje • 150 • updated 8 months ago by Shab86 • 220
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Conditioning association summary statistics using a correlation matrix.
imputation conditional analysis fine-mapping written 8 months ago by Vincent Laufer • 980
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Beagle 4.0 Imputation - Warning: Skipping VCF record with no data
beagle 4.0 imputation vcf-file written 8 months ago by Wietje • 150 • updated 8 months ago by Pierre Lindenbaum ♦ 111k
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