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<prev • 103 results • page 1 of 4 • next >
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is it .impute2 format equal to .gen format
impute2 imputation qctool written 10 weeks ago by Peter Chung • 30 • updated 29 days ago by Biostar ♦♦ 20
3
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1
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180
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1
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how to find strand information for a list of SNPs?
strand imputation microarray snp written 5 weeks ago by miaowzai • 20 • updated 5 weeks ago by Emily_Ensembl ♦ 13k
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1
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193
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1
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problem with chromosomes in michigan imputation server
imputation michigan server written 11 weeks ago by jfertaj • 60 • updated 11 weeks ago by Samuel Brady • 230
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4
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780
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4
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Imputation of chromosome X using the Michigan imputation server
imputation genotypes chrx written 5 months ago by Floris Brenk • 790 • updated 3 months ago by chariko • 30
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139
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Do imputed variants tend to show weaker, stronger, or the same average association compared to genotyped variants
imputation genotyped snp gwas written 3 months ago by Vincent Laufer • 870
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153
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R square value from genotype imputation process
gwas imputation population genetics written 4 months ago by isalinas221 • 10
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235
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Chromosome Y imputation, any good reference panels?
imputation chry genotyping written 4 months ago by Floris Brenk • 790
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2
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3.4k
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2
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Relation Between Hapmap Project And 1000Genomes Project
hapmap genome imputation sequencing written 5.6 years ago by Matthew • 50 • updated 5 months ago by Mitch Lokey • 20
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2
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Mach-admix: fatal error with physical map?
physical map mach-admix imputation fatal error written 2.1 years ago by Laura • 20
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2
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1.4k
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Can not pass QC when doing imputation with Michigan Imputation Serve and Haplotype Reference Consortium panels
hrc 23andme imputation genotype written 19 months ago by archie.w.lee • 20 • updated 6 months ago by shengchao.li • 10
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713
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Improving accuracy in small regions with Impute2
genome imputation accuracy snp impute2 written 2.4 years ago by lel7lel7 • 30 • updated 6 months ago by Biostar ♦♦ 20
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288
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Eagle phasing and minimac imputation
eagle minimac imputation genotypes phasing written 6 months ago by dp0b • 20
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336
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question about the impute2 output format
gwas imputation snp written 7 months ago by Peter Chung • 30
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278
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Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 7 months ago by ElCascador • 20
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455
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Imputation 1000 Genome and plink file
imputation 1000 genome impute2 written 8 months ago by mzezza • 0
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3
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1.9k
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3
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 13 months ago by mmagoo6 • 40 • updated 9 months ago by Tao • 120
50
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4
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22 follow
4
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How To Analyze Imputed Gwas Data
gwas imputation plink snp R written 6.5 years ago by Stephen ♦ 2.6k • updated 9 months ago by ShirleyDai • 20
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453
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Dosage data single probability to PLINK format
imputation written 10 months ago by smb2174 • 0
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423
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Imputation on two genotyping datasets: should I do imputation separately? or merge the two datasets first?
snps imputation eqtl genotyping written 10 months ago by Tao • 120
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516
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Filtering imputed vcf files based on probability scores
vcf imputation genotype written 13 months ago by Floris Brenk • 790 • updated 11 months ago by Biostar ♦♦ 20
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317
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result of imputation is vice versa
shapeit imputation minimac3 genotype plink written 11 months ago by fatima • 10
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1
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1
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How to convert vcf dosage file format to mldose format?
vcf imputation written 2.8 years ago by genetic • 20 • updated 12 months ago by lara.sucheston • 0
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362
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Ref and Alt switch after imputation
vcf ref alt imputation written 13 months ago by sxl919 • 10 • updated 12 months ago by geek_y ♦ 8.0k
2
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1
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367
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1
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Trouble after imputation with minimac
imputation minimac genetics snp written 13 months ago by ISB • 0 • updated 12 months ago by venkateshr89 • 680
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6
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3.6k
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14 follow
6
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Reformat minimac imputated files to plink file
minimac mach imputation plink written 3.4 years ago by Floris Brenk • 790 • updated 13 months ago by ISB • 0
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383
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genotype imputation - alleles
shapeit impute2 imputation written 13 months ago by alessandrotestori7 • 170
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590
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genotype imputation pipeline
gwas snps imputation written 14 months ago by alessandrotestori7 • 170
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2
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1.7k
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2
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Impute presence of HLA-B27 antigen in individual genome
genome 23andme imputation plink snp written 22 months ago by cslarsen • 0 • updated 14 months ago by Open Genomes • 0
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2
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1.6k
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2
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Generating .ped and .map files from .dose.vcf.gz files
gwas open imputation written 19 months ago by Diego.Morales • 10 • updated 15 months ago by m.acostaherrera • 0
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IMPUTE2 reference allele: same as matrixEQTL?
matrixeqtl impute2 imputation snp written 15 months ago by User 7754 • 120
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