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<prev • 165 results • page 1 of 6 • next >
2
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2
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3.0k
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2
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Can not pass QC when doing imputation with Michigan Imputation Serve and Haplotype Reference Consortium panels
hrc 23andme imputation genotype written 4.0 years ago by FAST_GENOME • 50 • updated 1 day ago by fabiotakeosato • 0
0
votes
1
answer
77
views
1
answer
Invalid allele error when attempting to run Beagle 5.0 splitvcf
vcf imputation beagle written 13 days ago by nadietz • 0 • updated 13 days ago by Pierre Lindenbaum ♦ 125k
1
vote
1
answer
1.4k
views
1
answer
is it .impute2 format equal to .gen format
impute2 imputation qctool written 2.5 years ago by Peter Chung • 90 • updated 6 weeks ago by Kevin Blighe ♦ 53k
0
votes
0
answers
74
views
0
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Merged Reference Panel using WES data
imputation reference sequencing written 10 weeks ago by shamav523 • 0
1
vote
0
answers
94
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0
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how to merge genetic map of ChrX nonPAR with PAR1 and PAR2 for imputation?
imputation plink beagle written 10 weeks ago by nchuang • 210
0
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0
answers
101
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0
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How to decide method for imputing the missing genotype in a VCF
shapeit impute2 imputation beagle written 10 weeks ago by nchuang • 210
0
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0
answers
244
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0
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Haplotype phasing and imputation in Beagle 5.1
imputation beagle rehh haplotype phasing written 12 weeks ago by kas • 0
0
votes
3
answers
822
views
3
answers
Beagle VCF header issue
imputation snp beagle written 14 months ago by vmuir • 0 • updated 3 months ago by 530234493 • 0
2
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3
answers
843
views
6 follow
3
answers
UK biobank HLA imputation data
hla uk biobank imputation written 14 months ago by aleph9999 • 10 • updated 3 months ago by ochaz • 0
0
votes
0
answers
123
views
0
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Imputation of X chromosome non-PAR for male subjects
imputation snp x chromsoome written 4 months ago by Apprentice • 30
0
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0
answers
144
views
0
answers
Why does genotype data change after genetic imputation?
imputation genotype written 4 months ago by iamselewa • 0
1
vote
1
answer
188
views
1
answer
Removing SNPs with the count allele in 5 (insertion), 6 (deletion) or 7(allele from a reference panel)
gwas imputation plink snp unix written 5 months ago by jongyun.jung • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 125k
1
vote
0
answers
335
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0
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convert .dose.gz and .info.gz files to plink binary format (.bim, .fam, .bed)
dose imputation plink info written 6 months ago by jongyun.jung • 10
3
votes
1
answer
249
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1
answer
Whats the point of genotype pruning before imputation?
imputation plink r2 --indep-pariwise written 6 months ago by optimistsso4co3 • 10
1
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0
answers
209
views
0
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fcGENE error during conversion from .ped to .gen
fcgene format conversion imputation written 6 months ago by pifferdavide • 100
1
vote
1
answer
169
views
1
answer
Read .sample file (file format available in plink) as a dataframe in pandas
pandas imputation plink written 6 months ago by datainterns • 10 • updated 6 months ago by bari.ballew • 190
1
vote
0
answers
314
views
0
answers
Imputation of scRNA-seq data
scrna-seq imputation rna-seq written 7 months ago by mariafirulevabio • 40
0
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0
answers
257
views
0
answers
How to use minimac3 to impute genotypes from a SNPmatrix dataset
genome imputation sequencing written 7 months ago by caesar_etos • 0
3
votes
1
answer
322
views
1
answer
IMPUTE2- Map file for custom reference panel
impute2 reference panel imputation written 7 months ago by john.michel.rouhana • 10 • updated 7 months ago by h.mon ♦ 29k
0
votes
0
answers
239
views
0
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Convert MACH (imputation) file formats to .gen file format
gen mldose mlinfo imputation written 7 months ago by anamaria • 80
0
votes
1
answer
315
views
1
answer
Memory error during imputation of full genome data for multiple samples
imputation snp beagle written 7 months ago by waqaskhokhar999 • 80 • updated 7 months ago by ociramoi • 0
1
vote
3
answers
1.3k
views
3
answers
Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 22 months ago by JSEM • 20 • updated 8 months ago by seta • 1.2k
0
votes
0
answers
290
views
0
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Imputating individual haplotype phase w/o Plink
haplotypes imputation genetics plink beagle written 9 months ago by los • 0
0
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0
answers
311
views
0
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How to convert DS value for chrX non-PAR SNPs in male
imputation snp chrx par written 9 months ago by Apprentice • 30
1
vote
0
answers
417
views
0
answers
Michigan imputation server quality control failed
imputation genotype written 10 months ago by Phoenix Mu • 10
5
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1
answer
2.7k
views
1
answer
Beagle imputation results quality control
vcf imputation beagle written 4.6 years ago by eyb • 180 • updated 10 months ago by Kevin Blighe ♦ 53k
2
votes
1
answer
816
views
1
answer
Quality control after genotype imputation
imputation written 10 months ago by jzannatun • 0
0
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0
answers
645
views
0
answers
Beagle 4.1 imputation
imputation written 12 months ago by cetin.m • 30 • updated 12 months ago by Biostar ♦♦ 20
0
votes
0
answers
244
views
0
answers
Beagle permanent file
imputation beagle written 12 months ago by cetin.m • 30
0
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0
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440
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0
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Genotyped SNPs were lost after michigan imputation server imputation and phasing
imputation michigan phasing written 13 months ago by Shicheng Guo • 8.0k
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