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<prev • 16 results • page 1 of 1 • next >
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how to impute genetic position of SNPs based on neighboring SNPs genetic positions?
R impute snp written 4 weeks ago by blacktomato27 • 60
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125
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Cross validation for imputation
cross validation impute snp written 11 weeks ago by switch.reem • 40
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Impute2 with AF
vcf impute2 frequency allele impute written 3 months ago by switch.reem • 40
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1
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5 follow
1
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Phasing with SHAPEIT
shapeit impute plink snp written 9 months ago by melania 2282 • 90 • updated 5 months ago by officialoxybreath • 0
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229
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Imputation of missing values for RT-qPCR data
missmda missing values impute rt-qpcr heatmap written 10 months ago by mohammedtoufiq91 • 110
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Not enough SNPs after filtering an imputed dataset
snp impute filtering qctool variants written 11 months ago by Max • 20
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1
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How to get imputation accuracy/quality after using IMPUTE2?
impute2 impute statistics written 19 months ago by Wan Shi Tong • 60
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LD pruning before imputation?
snp impute plink ld written 22 months ago by whtopjazz • 0 • updated 22 months ago by zx8754 ♦ 9.6k
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871
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ERROR: Missing one or both alleles for a genotype:
vcf gsub impute beagle written 2.2 years ago by vinayreddynannuru • 20 • updated 2.2 years ago by finswimmer ♦ 13k
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How to run Beagle to impute missing data using reference panel (1000 genome)?
software impute beagle written 2.4 years ago by nour.hadjz • 10 • updated 2.4 years ago by zx8754 ♦ 9.6k
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How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
genome R impute snp sequencing written 4.3 years ago by Shab86 • 250 • updated 2.7 years ago by vskale135 • 10
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Best way to use champ.impute or impute.knn - neighbor approach?
R impute champ written 2.9 years ago by mathias.heydt • 90
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1
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strand information for SNPs from VCF file (convert into IMPUTE format)
vcf format impute plink strand written 3.1 years ago by miaowzai • 240
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Calculating minor allele concordance
maf array exome impute concordance written 3.6 years ago by Vivek • 2.4k
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1
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Phased - Unphased genotypes
gene haplotypes impute snp phased genotypes written 3.7 years ago by mzezza • 10 • updated 3.7 years ago by Brian Bushnell ♦ 17k
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Selecting SNPs to impute in Plink
impute plink written 5.8 years ago by hessjl • 70 • updated 5.8 years ago by chrchang523 ♦ 7.3k
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