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3
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113
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IMPUTE2- Map file for custom reference panel
impute2 reference panel imputation written 6 weeks ago by john.michel.rouhana • 10 • updated 6 weeks ago by h.mon ♦ 26k
9
votes
2
answers
1.9k
views
2
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Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 3.6 years ago by lkmklsmn • 890 • updated 12 weeks ago by croshong75 • 0
4
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1
answer
296
views
1
answer
How to get imputation accuracy/quality after using IMPUTE2?
impute2 impute statistics written 4 months ago by Wan Shi Tong • 60
0
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0
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513
views
0
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Low SNP imputation concordance - except chromosome 1
impute2 imputation plink snp gwas written 11 months ago by muraved • 10
1
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1
answer
532
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1
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How calculate MAF from impute2 output in R
maf impute2 snp written 12 months ago by vgenepi • 10 • updated 11 months ago by zx8754 ♦ 7.8k
1
vote
1
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994
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1
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From Impute2 to PLINK: when to merge chromosome files?
impute2 imputation plink gwas written 18 months ago by whit18 • 20 • updated 18 months ago by Wietje • 200
0
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1
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1.5k
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1
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Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 3.6 years ago by ngsgene • 350 • updated 19 months ago by Kevin Blighe ♦ 45k
0
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1
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1.3k
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1
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Extracting SNP status using QCTOOL from an impute2 output
gwas impute2 snp qctool snptest written 19 months ago by nadia.lipunova • 0 • updated 19 months ago by pfs • 270
1
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0
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636
views
0
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Help Please! Stuck in .bed format and need to convert for Impute2
impute2 liftover written 20 months ago by whit18 • 20
0
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0
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694
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0
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Problem imputing (large) file into GenABEL
impute2databel impute2 genabel written 21 months ago by m93 • 150
0
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0
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612
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0
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IMPUTE2: change names of specific SNPs
impute2 snps names written 22 months ago by m93 • 150
1
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0
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1.2k
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0
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is it .impute2 format equal to .gen format
impute2 imputation qctool written 2.0 years ago by Peter Chung • 80 • updated 23 months ago by Biostar ♦♦ 20
2
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0
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1.3k
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6 follow
0
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imputation only choose one population as reference panel
shapeit impute2 population gwas written 2.4 years ago by Peter Chung • 80 • updated 2.2 years ago by ShirleyDai • 40
0
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0
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1.3k
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0
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Improving accuracy in small regions with Impute2
genome imputation accuracy snp impute2 written 4.2 years ago by lel7lel7 • 30 • updated 2.3 years ago by Biostar ♦♦ 20
0
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0
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859
views
0
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Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 2.5 years ago by ElCascador • 20
0
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0
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1.2k
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0
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Imputation 1000 Genome and plink file
imputation 1000 genome impute2 written 2.6 years ago by mzezza • 10
9
votes
3
answers
6.6k
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7 follow
3
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How to convert IMPUTE2 to VCF format
vcf impute2 conversion written 4.0 years ago by lkmklsmn • 890 • updated 2.7 years ago by dweeks.pitt • 40
1
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0
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1.1k
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0
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genotype imputation - alleles
shapeit impute2 imputation written 2.9 years ago by alessandrotestori7 • 330
0
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0
answers
987
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0
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IMPUTE2 reference allele: same as matrixEQTL?
matrixeqtl impute2 imputation snp written 3.1 years ago by User 7754 • 230
1
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0
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911
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0
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IMPUTE2 data extraction
impute2 data extraction written 3.1 years ago by tushardave26 • 10
2
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1
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1.5k
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1
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Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 3.2 years ago by kirannbishwa01 • 1.0k • updated 3.2 years ago by Zev.Kronenberg ♦ 11k
0
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0
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1.4k
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0
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Imputing specific SNPs and merging with original dataset
impute2 imputation plink snp gwas written 3.2 years ago by mbxtp1 • 0
0
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0
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1.3k
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0
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Subset dosage data
dosage impute2 plink gwas written 3.4 years ago by Veera • 90
0
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0
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1.4k
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0
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Subsetting individuals from IMPUTE2 ref files: .hap and .legend
genome impute2 written 3.4 years ago by GabrielMontenegro • 530
2
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1
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3.2k
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6 follow
1
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Which reference panel to use with Impute2
impute2 format 1000 genome written 4.9 years ago by raja.venks • 20 • updated 3.6 years ago by tulsi1192 • 0
3
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1
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2.7k
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1
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How to convert vcf to impute2 format?
vcf impute2 conversion written 3.8 years ago by grishin • 10
0
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1
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1.4k
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1
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Loading IMPUTE2 dosage data into plink/seq
dosage plink/seq impute2 written 4.1 years ago by potassiumiodide0990 • 80 • updated 3.9 years ago by Vincent Laufer • 1.1k
0
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1
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1.8k
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1
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.map file for Impute2
convert file format .map plink impute2 written 3.9 years ago by lmh327 • 0 • updated 3.9 years ago by chrchang523 ♦ 5.4k
0
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0
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1.6k
views
0
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Merging SNPs from multiple imputation runs
impute2 imputation vcftools written 4.0 years ago by lkmklsmn • 890
6
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1
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2.0k
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1
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Formatting genotype matrix for imputation
impute2 matrix plink genotype written 4.0 years ago by Alexander Skates • 340 • updated 4.0 years ago by Endre Bakken Stovner • 880
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