Showing: impute2reset
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How calculate MAF from impute2 output in R
maf impute2 snp written 8 months ago by vgenepi10 • updated 7 months ago by zx87546.8k
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Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 3.3 years ago by lkmklsmn870 • updated 10 months ago by Biostar ♦♦ 20
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From Impute2 to PLINK: when to merge chromosome files?
impute2 imputation plink gwas written 14 months ago by whit1820 • updated 14 months ago by Wietje180
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Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 3.3 years ago by ngsgene350 • updated 15 months ago by Kevin Blighe39k
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Extracting SNP status using QCTOOL from an impute2 output
gwas impute2 snp qctool snptest written 16 months ago by nadia.lipunova0 • updated 16 months ago by pfs250
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IMPUTE2: change names of specific SNPs
impute2 snps names written 18 months ago by m93140
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is it .impute2 format equal to .gen format
impute2 imputation qctool written 20 months ago by Peter Chung80 • updated 19 months ago by Biostar ♦♦ 20
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imputation only choose one population as reference panel
shapeit impute2 population gwas written 2.1 years ago by Peter Chung80 • updated 22 months ago by ShirleyDai40
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Improving accuracy in small regions with Impute2
genome imputation accuracy snp impute2 written 3.9 years ago by lel7lel730 • updated 2.0 years ago by Biostar ♦♦ 20
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How to convert IMPUTE2 to VCF format
vcf impute2 conversion written 3.6 years ago by lkmklsmn870 • updated 2.4 years ago by dweeks.pitt30
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Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 2.9 years ago by kirannbishwa01950 • updated 2.9 years ago by Zev.Kronenberg11k
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Subset dosage data
dosage impute2 plink gwas written 3.1 years ago by Veera 90
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Which reference panel to use with Impute2
impute2 format 1000 genome written 4.6 years ago by raja.venks20 • updated 3.3 years ago by tulsi11920
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Loading IMPUTE2 dosage data into plink/seq
dosage plink/seq impute2 written 3.8 years ago by potassiumiodide099070 • updated 3.6 years ago by Vincent Laufer1.0k
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.map file for Impute2
convert file format .map plink impute2 written 3.6 years ago by lmh3270 • updated 3.6 years ago by chrchang5234.8k
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Formatting genotype matrix for imputation
impute2 matrix plink genotype written 3.6 years ago by Alexander Skates320 • updated 3.6 years ago by Endre Bakken Stovner880
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