Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: impute2 • reset
or   Classic search
<prev • 37 results • page 1 of 2 • next >
4
votes
1
answer
114
views
1
answer
How to get imputation accuracy/quality after using IMPUTE2?
impute2 impute statistics written 25 days ago by Wan Shi Tong • 50
0
votes
0
answers
379
views
0
answers
Low SNP imputation concordance - except chromosome 1
impute2 imputation plink snp gwas written 7 months ago by muraved • 10
1
vote
1
answer
382
views
1
answer
How calculate MAF from impute2 output in R
maf impute2 snp written 8 months ago by vgenepi • 10 • updated 7 months ago by zx8754 ♦ 6.8k
9
votes
1
answer
1.8k
views
1
answer
Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 3.3 years ago by lkmklsmn • 870 • updated 10 months ago by Biostar ♦♦ 20
1
vote
1
answer
835
views
1
answer
From Impute2 to PLINK: when to merge chromosome files?
impute2 imputation plink gwas written 14 months ago by whit18 • 20 • updated 14 months ago by Wietje • 180
0
votes
1
answer
1.3k
views
1
answer
Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 3.3 years ago by ngsgene • 350 • updated 15 months ago by Kevin Blighe ♦ 39k
0
votes
1
answer
1.1k
views
1
answer
Extracting SNP status using QCTOOL from an impute2 output
gwas impute2 snp qctool snptest written 16 months ago by nadia.lipunova • 0 • updated 16 months ago by pfs • 250
1
vote
0
answers
537
views
0
answers
Help Please! Stuck in .bed format and need to convert for Impute2
impute2 liftover written 16 months ago by whit18 • 20
0
votes
0
answers
597
views
0
answers
Problem imputing (large) file into GenABEL
impute2databel impute2 genabel written 17 months ago by m93 • 140
0
votes
0
answers
528
views
0
answers
IMPUTE2: change names of specific SNPs
impute2 snps names written 18 months ago by m93 • 140
1
vote
0
answers
976
views
0
answers
is it .impute2 format equal to .gen format
impute2 imputation qctool written 20 months ago by Peter Chung • 80 • updated 19 months ago by Biostar ♦♦ 20
2
votes
0
answers
1.2k
views
6 follow
0
answers
imputation only choose one population as reference panel
shapeit impute2 population gwas written 2.1 years ago by Peter Chung • 80 • updated 22 months ago by ShirleyDai • 40
0
votes
0
answers
1.2k
views
0
answers
Improving accuracy in small regions with Impute2
genome imputation accuracy snp impute2 written 3.9 years ago by lel7lel7 • 30 • updated 2.0 years ago by Biostar ♦♦ 20
0
votes
0
answers
780
views
0
answers
Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 2.1 years ago by ElCascador • 20
0
votes
0
answers
1.1k
views
0
answers
Imputation 1000 Genome and plink file
imputation 1000 genome impute2 written 2.2 years ago by mzezza • 10
7
votes
3
answers
6.1k
views
7 follow
3
answers
How to convert IMPUTE2 to VCF format
vcf impute2 conversion written 3.6 years ago by lkmklsmn • 870 • updated 2.4 years ago by dweeks.pitt • 30
1
vote
0
answers
1.0k
views
0
answers
genotype imputation - alleles
shapeit impute2 imputation written 2.6 years ago by alessandrotestori7 • 330
0
votes
0
answers
889
views
0
answers
IMPUTE2 reference allele: same as matrixEQTL?
matrixeqtl impute2 imputation snp written 2.8 years ago by User 7754 • 230
1
vote
0
answers
831
views
0
answers
IMPUTE2 data extraction
impute2 data extraction written 2.8 years ago by tushardave26 • 10
2
votes
1
answer
1.4k
views
1
answer
Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 2.9 years ago by kirannbishwa01 • 950 • updated 2.9 years ago by Zev.Kronenberg ♦ 11k
0
votes
0
answers
1.3k
views
0
answers
Imputing specific SNPs and merging with original dataset
impute2 imputation plink snp gwas written 2.9 years ago by mbxtp1 • 0
0
votes
0
answers
1.1k
views
0
answers
Subset dosage data
dosage impute2 plink gwas written 3.1 years ago by Veera • 90
0
votes
0
answers
1.3k
views
0
answers
Subsetting individuals from IMPUTE2 ref files: .hap and .legend
genome impute2 written 3.1 years ago by GabrielMontenegro • 510
2
votes
1
answer
3.0k
views
6 follow
1
answer
Which reference panel to use with Impute2
impute2 format 1000 genome written 4.6 years ago by raja.venks • 20 • updated 3.3 years ago by tulsi1192 • 0
3
votes
1
answer
2.4k
views
1
answer
How to convert vcf to impute2 format?
vcf impute2 conversion written 3.4 years ago by grishin • 10
0
votes
1
answer
1.3k
views
1
answer
Loading IMPUTE2 dosage data into plink/seq
dosage plink/seq impute2 written 3.8 years ago by potassiumiodide0990 • 70 • updated 3.6 years ago by Vincent Laufer • 1.0k
0
votes
1
answer
1.7k
views
1
answer
.map file for Impute2
convert file format .map plink impute2 written 3.6 years ago by lmh327 • 0 • updated 3.6 years ago by chrchang523 ♦ 4.8k
0
votes
0
answers
1.4k
views
0
answers
Merging SNPs from multiple imputation runs
impute2 imputation vcftools written 3.6 years ago by lkmklsmn • 870
6
votes
1
answer
1.9k
views
1
answer
Formatting genotype matrix for imputation
impute2 matrix plink genotype written 3.6 years ago by Alexander Skates • 320 • updated 3.6 years ago by Endre Bakken Stovner • 880
1
vote
0
answers
1.5k
views
0
answers
How to just use 1000 genomes phase 3 CHB+JPT+CHS data as reference to impute?
impute2 genotype snp 1000 genomes written 3.6 years ago by lovehopex • 0
<prev • 37 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • Spain. Universidad de Córdoba, 2 minutes ago
  • United States, 4 minutes ago
  • Austria/Vienna, 4 minutes ago
  • United Kingdom, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1021 users visited in the last hour