Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 49 results • page 1 of 2 • next >
0
votes
0
answers
1.0k
views
0
answers
IMPUTE2: change names of specific SNPs
impute2 snps names written 3.3 years ago by m98 • 280 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
137
views
0
answers
ShapeIT output File Allele Info
shapeit vcf shapeit3 impute2 shapeit2 written 8 weeks ago by prmshakya • 0
4
votes
0
answers
188
views
5 follow
0
answers
bcftools convert imputed2 file error
impute2 bcftools covert written 4 months ago by switch.reem • 40 • updated 4 months ago by zx8754 ♦ 9.9k
0
votes
1
answer
252
views
1
answer
IMPUTE2: how to dynamically obtain chunks for each chromosome
impute2 chunks written 6 months ago by m98 • 280 • updated 6 months ago by jmukisa90 • 30
0
votes
0
answers
177
views
0
answers
creating gen file from bcftools based on minor allele frequency
genome gen bcftools minor allele impute2 written 6 months ago by switch.reem • 40
0
votes
0
answers
148
views
0
answers
Impute2 with AF
vcf impute2 frequency allele impute written 8 months ago by switch.reem • 40
0
votes
1
answer
226
views
1
answer
IMPUTE2 variable question
vcf impute2 imputation written 9 months ago by raalsuwaidi • 0 • updated 9 months ago by Kevin Blighe ♦ 69k
4
votes
1
answer
831
views
1
answer
ERROR: You must specify a valid interval for imputation using the -int argument, -use_prephased_g: command not found, in IMPUTE2
software error impute2 written 10 months ago by jmukisa90 • 30 • updated 9 months ago by Kevin Blighe ♦ 69k
0
votes
0
answers
418
views
0
answers
Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 18 months ago by nataliagru1 • 60 • updated 10 months ago by Biostar ♦♦ 20
4
votes
1
answer
580
views
1
answer
impute2 output files to vcf
impute2 vcf file output written 13 months ago by tarek.mohamed • 270 • updated 13 months ago by _r_am ♦ 32k
1
vote
0
answers
2.0k
views
0
answers
is it .impute2 format equal to .gen format
impute2 imputation qctool written 3.5 years ago by Peter Chung • 120 • updated 13 months ago by Kevin Blighe ♦ 69k
2
votes
0
answers
448
views
0
answers
Imputation from plink
shapeit impute2 plink written 14 months ago by michael.flower.14 • 0
0
votes
0
answers
397
views
0
answers
How to decide method for imputing the missing genotype in a VCF
shapeit impute2 imputation beagle written 14 months ago by nchuang • 250
2
votes
0
answers
448
views
0
answers
Recombination maps for cattle
genome impute2 snp assembly written 16 months ago by mdyogolos • 10
3
votes
1
answer
846
views
5 follow
1
answer
IMPUTE2- Map file for custom reference panel
impute2 reference panel imputation written 19 months ago by john.michel.rouhana • 10 • updated 19 months ago by h.mon ♦ 32k
13
votes
1
answer
2.8k
views
1
answer
Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 5.1 years ago by lkmklsmn • 930 • updated 21 months ago by croshong75 • 0
5
votes
1
answer
1.1k
views
1
answer
How to get imputation accuracy/quality after using IMPUTE2?
impute2 impute statistics written 23 months ago by Wan Shi Tong • 60
0
votes
0
answers
998
views
0
answers
Low SNP imputation concordance - except chromosome 1
impute2 imputation plink snp gwas written 2.4 years ago by muraved • 10
2
votes
1
answer
1.1k
views
1
answer
How calculate MAF from impute2 output in R
maf impute2 snp written 2.6 years ago by vgenepi • 10 • updated 2.4 years ago by zx8754 ♦ 9.9k
3
votes
2
answers
1.8k
views
2
answers
From Impute2 to PLINK: when to merge chromosome files?
impute2 imputation plink gwas written 3.0 years ago by whit18 • 20 • updated 3.0 years ago by Wietje • 220
0
votes
0
answers
2.3k
views
0
answers
Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 5.2 years ago by ngsgene • 370 • updated 3.1 years ago by Kevin Blighe ♦ 69k
1
vote
0
answers
1.1k
views
0
answers
Help Please! Stuck in .bed format and need to convert for Impute2
impute2 liftover written 3.2 years ago by whit18 • 20
0
votes
0
answers
1.0k
views
0
answers
Problem imputing (large) file into GenABEL
impute2databel impute2 genabel written 3.3 years ago by m98 • 280
2
votes
0
answers
2.0k
views
6 follow
0
answers
imputation only choose one population as reference panel
shapeit impute2 population gwas written 3.9 years ago by Peter Chung • 120 • updated 3.7 years ago by ShirleyDai • 40
0
votes
0
answers
1.6k
views
0
answers
Improving accuracy in small regions with Impute2
genome imputation accuracy snp impute2 written 5.7 years ago by lel7lel7 • 30 • updated 3.9 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.1k
views
0
answers
Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 4.0 years ago by ElCascador • 20
0
votes
0
answers
1.7k
views
0
answers
Imputation 1000 Genome and plink file
imputation 1000 genome impute2 written 4.1 years ago by mzezza • 10
9
votes
2
answers
8.7k
views
7 follow
2
answers
How to convert IMPUTE2 to VCF format
vcf impute2 conversion written 5.5 years ago by lkmklsmn • 930 • updated 4.2 years ago by dweeks.pitt • 40
1
vote
0
answers
1.5k
views
0
answers
genotype imputation - alleles
shapeit impute2 imputation written 4.4 years ago by alessandrotestori7 • 390
0
votes
0
answers
1.3k
views
0
answers
IMPUTE2 reference allele: same as matrixEQTL?
matrixeqtl impute2 imputation snp written 4.6 years ago by User 7754 • 250
<prev • 49 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • Canada, 5 minutes ago
  • Republic of Ireland, 6 minutes ago
  • Bloomington, IN, 6 minutes ago
  • Sweden, 9 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1133 users visited in the last hour
_