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<prev • 199 results • page 1 of 7 • next >
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RNA-SEQ SNP calling
indel variant snp rna-seq written 10 days ago by babji2318 • 0 • updated 10 days ago by JC ♦ 7.4k
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5
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824
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VariantCalling with single sanger read
indel snps variantcalling blast written 2.5 years ago by Amirosein • 70 • updated 15 days ago by trausch • 1.2k
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how to change indel to smallest length in vcf
indel annotation next-gen vcf written 8 weeks ago by 1097049297 • 0
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8 follow
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Mismatch and Indel statistics from BAM/SAM file
indel bam sam written 21 months ago by sbdk82 • 40 • updated 9 weeks ago by FatihSarigol • 110
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1
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252
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How to merge vcf files (output of VarScan2 somatic)?
vcf indel merge varscan2 snp written 9 weeks ago by Raheleh • 50
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243
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Variants calling by bcftools
indel alignment snp written 11 weeks ago by Mbillah • 110 • updated 11 weeks ago by ATpoint ♦ 13k
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186
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Advice for indel calling
indel rna-seq written 4 months ago by jparker4 • 20 • updated 3 months ago by Biostar ♦♦ 20
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is DANN capable of scoring insertion and deletion?
indel genome annotation snp non-coding written 23 months ago by fetus0000 • 20 • updated 3 months ago by Kevin Blighe ♦ 37k
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Long Reads: Nanopore/ PacBio
indel nanopre cnv snv longreads written 3 months ago by ResearchR • 40
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Question about Base calling for pacbio data
genome indel pacbio snp gatk written 4 months ago by kamel • 0 • updated 4 months ago by Vijay Lakhujani ♦ 3.6k
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5 follow
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Indel Detection For 454 Resequencing
indel next-gen sequencing written 8.6 years ago by Daniel Swan ♦ 13k • updated 5 months ago by RamRS ♦ 20k
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8 follow
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Indel Left/Right Alignment
indel written 5.9 years ago by sa9 • 800 • updated 5 months ago by hugues.sicotte • 0
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Allele counting tool for a list of known indels from paired end sequencing data
indel pindel sequencing allele counting genotyping written 6 months ago by erfan741 • 30 • updated 6 months ago by btsui • 290
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Detecting Homozygous Insertion from Sanger Seq
indel sanger written 6 months ago by justinms • 10 • updated 6 months ago by trausch • 1.2k
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using the docker container of cgpPINDEL
indel wgs snv pindel written 8 months ago by Bogdan • 700 • updated 7 months ago by Biostar ♦♦ 20
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Can´T Find The Snps With Samtools (Only Get Indels)
indel alignment samtools snp written 7.5 years ago by Pilar E. • 90 • updated 7 months ago by Biostar ♦♦ 20
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SNP + INDEL Merging Guidelines
vcf indel snp merging written 8 months ago by QVINTVS_FABIVS_MAXIMVS • 2.2k
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When should you left-align INDELs (and why?)
indel vcf left align written 8 months ago by QVINTVS_FABIVS_MAXIMVS • 2.2k
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5 follow
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How do variant callers get genotype info?
variant calling indel snp phasing written 8 months ago by afzm • 20 • updated 8 months ago by Jeremy Leipzig ♦ 18k
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305
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How to analyse mtDNA insertion from NGS data?
indel mtdna ngs written 8 months ago by MatthewP • 60
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Determine Insertion Sequence
indel assembly alignment sv sequencing written 9 months ago by aostern • 30 • updated 9 months ago by d-cameron • 2.0k
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SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 10 months ago by Federico Giorgi • 450 • updated 10 months ago by finswimmer ♦ 10k
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239
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locateVariants returns an empty result
indel R bioconductor variantannotation written 10 months ago by boris • 0
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2
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680
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5 follow
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Is indel realigning necessary for INDEL discovery?
indel gatk indelrealigner written 10 months ago by deepti1rao • 20 • updated 10 months ago by Jorge Amigo ♦ 11k
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6 follow
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a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
indel sv snv cnv written 11 months ago by Bogdan • 700 • updated 11 months ago by Eric T. • 2.3k
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Process the VCF files for a huge number of samples
vcf indel exome-seq snp written 11 months ago by wangdp123 • 140
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Changing the reference haplotype in VCF
vcf indel alignment snp written 12 months ago by Michael Kosicki • 80 • updated 12 months ago by Kevin Blighe ♦ 37k
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635
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Identify homopolymer stretches in a given genome
variant calling indel homopolymers snp written 16 months ago by ATpoint ♦ 13k
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Is there something wrong with my Indel Calling protocol?
indel genome alignment bwa rna-seq written 13 months ago by lishen0709 • 0
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Identifying variants differing between control/treatment
variant-calling gatk indel snp written 13 months ago by rmf • 540 • updated 13 months ago by Pierre Lindenbaum ♦ 117k
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