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<prev • 190 results • page 1 of 7 • next >
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SNP + INDEL Merging Guidelines
vcf indel snp merging written 4 days ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
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When should you left-align INDELs (and why?)
indel vcf left align written 9 days ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
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How do variant callers get genotype info?
variant calling indel snp phasing written 14 days ago by afzm • 20 • updated 14 days ago by Jeremy Leipzig ♦ 17k
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using the docker container of cgpPINDEL
indel wgs snv pindel written 14 days ago by Bogdan • 510
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How to analyse mtDNA insertion from NGS data?
indel mtdna ngs written 25 days ago by MatthewP • 0
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Determine Insertion Sequence
indel assembly alignment sv sequencing written 7 weeks ago by aostern • 20 • updated 7 weeks ago by d-cameron • 1.8k
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SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 9 weeks ago by Federico Giorgi • 390 • updated 9 weeks ago by finswimmer ♦ 2.8k
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locateVariants returns an empty result
indel R bioconductor variantannotation written 9 weeks ago by boris • 0
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Is indel realigning necessary for INDEL discovery?
indel gatk indelrealigner written 10 weeks ago by deepti1rao • 0 • updated 10 weeks ago by Jorge Amigo ♦ 10k
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a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
indel sv snv cnv written 3 months ago by Bogdan • 510 • updated 3 months ago by Eric T. • 2.2k
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Process the VCF files for a huge number of samples
vcf indel exome-seq snp written 3 months ago by wangdp123 • 110
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Changing the reference haplotype in VCF
vcf indel alignment snp written 3 months ago by Michael Kosicki • 80 • updated 3 months ago by Kevin Blighe ♦ 21k
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Identify homopolymer stretches in a given genome
variant calling indel homopolymers snp written 7 months ago by ATpoint • 4.4k
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Is there something wrong with my Indel Calling protocol?
indel genome alignment bwa rna-seq written 5 months ago by lishen0709 • 0
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Identifying variants differing between control/treatment
variant-calling gatk indel snp written 5 months ago by rmf • 270 • updated 5 months ago by Pierre Lindenbaum ♦ 108k
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Where can I find NGS data with large indels
indel data ngs written 6 months ago by yingjin225 • 10 • updated 5 months ago by Biostar ♦♦ 20
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Indel heterozygosity frequency
indel snp written 6 months ago by hdtms • 20
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6 follow
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Can phasing or pre-phase during basecall cause indel?
indel phasing written 6 months ago by CY • 130 • updated 6 months ago by Kevin Blighe ♦ 21k
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Annotation of genomic variants
indel analysis mutations snp variants written 6 months ago by onemoreuser • 10
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how to judge the genotype for the postion with 'rs8175347' ?
indel snp sequencing written 7 months ago by kaixian110 • 0 • updated 7 months ago by Kevin Blighe ♦ 21k
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Indel: Insertion/Deletion count
indel written 7 months ago by hdtms • 20
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Variant Calling in Low-Complexity Regions
indel low-complexity variants snp varscan written 8 months ago by ATpoint • 4.4k • updated 7 months ago by Biostar ♦♦ 20
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Lack of consensus between NGS & Sanger sequencing on indels/mutations
indel sanger ngs bwa mem variant calling written 2.6 years ago by alons • 250 • updated 7 months ago by Kevin Blighe ♦ 21k
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 16 months ago by Chen • 670 • updated 7 months ago by Biostar ♦♦ 20
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How can I remove Indels from a VCF file that are actually microsatellite variants?
indel microsatellite written 7 months ago by anp375 • 140 • updated 7 months ago by Pierre Lindenbaum ♦ 108k
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Filtering Vcf File
vcf indel vcftools snp written 5.8 years ago by bioinfo • 680 • updated 8 months ago by DataFanatic • 100
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Suggestion on contig assembler which respect a single copy mutation in a nonaploid genome?
indel assembly insertion deletion written 8 months ago by johnnytam100 • 40
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Indel detectors for Ion Torrent data
indel written 8 months ago by yelekley7 • 0 • updated 8 months ago by Kevin Blighe ♦ 21k
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Structural variation detection from RNA-seq
indel rna-seq written 8 months ago by Hanan • 70 • updated 8 months ago by colindaven • 700
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Fermikit : Any recommendation on visualization of the output files?
indel fermikit vcf visualization bam written 9 months ago by johnnytam100 • 40
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