Showing: indelreset
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Tool: Varscan: Variant Detection In Massively Parallel Sequencing Data
indel varscan tool snp written 5.3 years ago by Istvan Albert ♦♦ 73k • updated 7 days ago by AcademicDialysis60
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 4 months ago by Macspider1.2k • updated 8 weeks ago by Biostar ♦♦ 20
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Extracting Specific Reads From Vcf File
vcf indel script file python written 5.1 years ago by Bnfoguy70 • updated 10 weeks ago by Begali0
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Scalpel Error - INDELS
indel scalpel written 15 months ago by agata88610 • updated 11 weeks ago by sydaileen0
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How to extract reads with no INDEL?
indel samtools sam written 3 months ago by Jeason Rad30 • updated 3 months ago by dariober8.0k
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Searching For Deletion In A Low Number Of Reads
indel mitochondria tophat written 4.9 years ago by Assa Yeroslaviz1.1k • updated 3 months ago by Biostar ♦♦ 20
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Mismatch and Indel statistics from BAM/SAM file
indel bam sam written 3 months ago by sbdk8230 • updated 3 months ago by Brian Bushnell13k
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VCF file PL values for more than 1 alternatives allele
indel vcf snp written 4 months ago by bharata1803230 • updated 4 months ago by Santosh Anand2.9k
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extract SNP, variants
indel variant calling snp rna-seq mapping written 4 months ago by divya10 • updated 4 months ago by AB60
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is DANN capable of scoring insertion and deletion?
indel genome annotation snp non-coding written 5 months ago by fetus000020 • updated 4 months ago by Biostar ♦♦ 20
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somatic variant calling with no germline sample
indel snp somatic mutation written 5 months ago by Bogdan260 • updated 5 months ago by d-cameron780
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Merge SNP & INDEL vcf files
vcf indel snp written 5 months ago by mplace10
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 5 months ago by Chen510 • updated 5 months ago by WouterDeCoster20k
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INDEL left alignment in bam and vcf
indel aligner bowtie bwa blasr written 6 months ago by mark.rose10 • updated 6 months ago by Brian Bushnell13k
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What Are The Next Steps For Processing Indels From Gatk
indel gatk depth-of-coverage filtering written 4.3 years ago by bari140 • updated 6 months ago by Biostar ♦♦ 20
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How to extract information from a VCF file
indel vcf galaxy snp mnp written 8 months ago by ron20 • updated 8 months ago by Macspider1.2k
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Multi-Sample Indel Realignment Using Gatk
indel gatk written 4.7 years ago by Sebastian10 • updated 8 months ago by Biostar ♦♦ 20
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INDEL detection tool recommendation
indel cnv written 8 months ago by nayshool20
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local de novo assembly and split-read alignment at known sites and output bams?
indel snv written 9 months ago by lyz10302012260 • updated 9 months ago by Devon Ryan70k
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IndelRealigner and RealignerTargetCreator for amplicon sequencing
indel amplicon-seq ngs written 9 months ago by kulvait200 • updated 9 months ago by WouterDeCoster20k
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