Showing: indelreset
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 1 day ago by Chen Sun380 • updated 9 hours ago by WouterDeCoster13k
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INDEL left alignment in bam and vcf
indel aligner bowtie bwa blasr written 16 days ago by mark.rose10 • updated 16 days ago by Brian Bushnell9.8k
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What Are The Next Steps For Processing Indels From Gatk
indel gatk depth-of-coverage filtering written 3.8 years ago by bari140 • updated 26 days ago by Biostar ♦♦ 10
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How to extract information from a VCF file
indel vcf galaxy snp mnp written 10 weeks ago by ron20 • updated 9 weeks ago by Macspider400
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Multi-Sample Indel Realignment Using Gatk
indel gatk written 4.2 years ago by Sebastian10 • updated 10 weeks ago by Biostar ♦♦ 10
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INDEL detection tool recommendation
indel cnv written 12 weeks ago by nayshool0
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local de novo assembly and split-read alignment at known sites and output bams?
indel snv written 3 months ago by lyz10302012230 • updated 3 months ago by Devon Ryan62k
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IndelRealigner and RealignerTargetCreator for amplicon sequencing
indel amplicon-seq ngs written 4 months ago by kulvait160 • updated 4 months ago by WouterDeCoster13k
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indel preprocessing prior to bam-readcount
indel varscan fpfilter.pl bam-readcount written 5 months ago by Jokhe40 • updated 4 months ago by m.b0
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gold standard for human genome genotyping
indel 1k human genome dataset genotyping written 8 months ago by watermelon10370 • updated 4 months ago by Biostar ♦♦ 10
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gatk base recalibration results for 1000 genomes
indel 1000 genomes snp gatk written 5 months ago by cmo30 • updated 4 months ago by Biostar ♦♦ 10
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Convert INDEL format for use in Annovar
indel annovar insertion-deletion annotation written 5 months ago by User 7754120 • updated 5 months ago by igor3.4k
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samtools mpileup not calling small (6 base) INSERT
indel vcf samtools mpileup prokaryote written 8 months ago by ALchEmiXt1.7k • updated 5 months ago by sb10
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VariantCalling with single sanger read
indel snps variantcalling blast written 6 months ago by Ameerosein70 • updated 6 months ago by WouterDeCoster13k
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How to phase a WGS dataset preserving the indels within it?
genome indel snp phasing sequencing written 8 months ago by Shab86180 • updated 8 months ago by piet1.3k
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The Best Pipeline for Indel Calling
indel insert deletion written 9 months ago by Shicheng Guo4.2k • updated 9 months ago by natasha.sernova2.4k
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Scalpel Error - INDELS
indel scalpel written 9 months ago by agata88440 • updated 9 months ago by Biostar ♦♦ 10
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vcf files in gatk not showing data lines
haplotypecaller gatk indel snp written 10 months ago by jamessemaj7120 • updated 9 months ago by Biostar ♦♦ 10
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detection of in/del in sanger sequencing
indel sanger variant detection written 10 months ago by Ameerosein70 • updated 10 months ago by Devon Ryan62k
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A problem of using Samtools to make VCF file
indel vcf samtools snp written 10 months ago by watermelon10370 • updated 10 months ago by maiziex0
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Extracting Specific Reads From Vcf File
vcf indel script file python written 4.6 years ago by Bnfoguy70 • updated 10 months ago by Biostar ♦♦ 10
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Dataset for NGS
indel dataset snp cnv written 10 months ago by jamessemaj7120 • updated 10 months ago by rbagnall1.1k
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