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<prev • 191 results • page 1 of 7 • next >
4
votes
3
answers
140
views
5 follow
3
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Detecting Homozygous Insertion from Sanger Seq
indel sanger written 18 days ago by justinms • 0 • updated 17 days ago by trausch • 1.0k
0
votes
0
answers
113
views
0
answers
using the docker container of cgpPINDEL
indel wgs snv pindel written 10 weeks ago by Bogdan • 550 • updated 28 days ago by Biostar ♦♦ 20
11
votes
1
answer
2.3k
views
1
answer
Can´T Find The Snps With Samtools (Only Get Indels)
indel alignment samtools snp written 7.0 years ago by Pilar E. • 90 • updated 5 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
166
views
0
answers
SNP + INDEL Merging Guidelines
vcf indel snp merging written 8 weeks ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
6
votes
1
answer
177
views
1
answer
When should you left-align INDELs (and why?)
indel vcf left align written 9 weeks ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
6
votes
2
answers
190
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5 follow
2
answers
How do variant callers get genotype info?
variant calling indel snp phasing written 10 weeks ago by afzm • 20 • updated 10 weeks ago by Jeremy Leipzig ♦ 17k
0
votes
0
answers
125
views
0
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How to analyse mtDNA insertion from NGS data?
indel mtdna ngs written 11 weeks ago by MatthewP • 10
5
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2
answers
222
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2
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Determine Insertion Sequence
indel assembly alignment sv sequencing written 3 months ago by aostern • 30 • updated 3 months ago by d-cameron • 1.9k
5
votes
1
answer
188
views
1
answer
SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 4 months ago by Federico Giorgi • 410 • updated 4 months ago by finswimmer ♦ 4.4k
0
votes
0
answers
131
views
0
answers
locateVariants returns an empty result
indel R bioconductor variantannotation written 4 months ago by boris • 0
5
votes
2
answers
293
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5 follow
2
answers
Is indel realigning necessary for INDEL discovery?
indel gatk indelrealigner written 4 months ago by deepti1rao • 0 • updated 4 months ago by Jorge Amigo ♦ 11k
6
votes
2
answers
292
views
6 follow
2
answers
a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
indel sv snv cnv written 5 months ago by Bogdan • 550 • updated 5 months ago by Eric T. • 2.2k
0
votes
0
answers
229
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0
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Process the VCF files for a huge number of samples
vcf indel exome-seq snp written 5 months ago by wangdp123 • 110
4
votes
3
answers
395
views
3
answers
Changing the reference haplotype in VCF
vcf indel alignment snp written 5 months ago by Michael Kosicki • 80 • updated 5 months ago by Kevin Blighe ♦ 26k
4
votes
1
answer
450
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1
answer
Identify homopolymer stretches in a given genome
variant calling indel homopolymers snp written 9 months ago by ATpoint ♦ 6.5k
0
votes
0
answers
330
views
0
answers
Is there something wrong with my Indel Calling protocol?
indel genome alignment bwa rna-seq written 7 months ago by lishen0709 • 0
2
votes
1
answer
318
views
1
answer
Identifying variants differing between control/treatment
variant-calling gatk indel snp written 7 months ago by rmf • 320 • updated 7 months ago by Pierre Lindenbaum ♦ 111k
2
votes
0
answers
416
views
0
answers
Where can I find NGS data with large indels
indel data ngs written 8 months ago by yingjin225 • 10 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
268
views
0
answers
Indel heterozygosity frequency
indel snp written 8 months ago by hdtms • 20
9
votes
1
answer
461
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6 follow
1
answer
Can phasing or pre-phase during basecall cause indel?
indel phasing written 8 months ago by CY • 140 • updated 8 months ago by Kevin Blighe ♦ 26k
0
votes
0
answers
338
views
0
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Annotation of genomic variants
indel analysis mutations snp variants written 8 months ago by onemoreuser • 10
0
votes
1
answer
300
views
1
answer
how to judge the genotype for the postion with 'rs8175347' ?
indel snp sequencing written 9 months ago by kaixian110 • 0 • updated 9 months ago by Kevin Blighe ♦ 26k
0
votes
0
answers
454
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0
answers
Indel: Insertion/Deletion count
indel written 9 months ago by hdtms • 20
4
votes
0
answers
577
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0
answers
Variant Calling in Low-Complexity Regions
indel low-complexity variants snp varscan written 10 months ago by ATpoint ♦ 6.5k • updated 9 months ago by Biostar ♦♦ 20
18
votes
3
answers
1.8k
views
3
answers
Lack of consensus between NGS & Sanger sequencing on indels/mutations
indel sanger ngs bwa mem variant calling written 2.7 years ago by alons • 260 • updated 9 months ago by Kevin Blighe ♦ 26k
3
votes
2
answers
796
views
2
answers
In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 18 months ago by Chen • 690 • updated 9 months ago by Biostar ♦♦ 20
1
vote
1
answer
514
views
1
answer
How can I remove Indels from a VCF file that are actually microsatellite variants?
indel microsatellite written 9 months ago by anp375 • 140 • updated 9 months ago by Pierre Lindenbaum ♦ 111k
49
votes
4
answers
31k
views
29 follow
4
answers
Filtering Vcf File
vcf indel vcftools snp written 6.0 years ago by bioinfo • 680 • updated 9 months ago by DataFanatic • 100
0
votes
0
answers
426
views
0
answers
Suggestion on contig assembler which respect a single copy mutation in a nonaploid genome?
indel assembly insertion deletion written 10 months ago by johnnytam100 • 40
1
vote
1
answer
495
views
1
answer
Indel detectors for Ion Torrent data
indel written 10 months ago by genya35 • 0 • updated 10 months ago by Kevin Blighe ♦ 26k
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