Showing: indelreset
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4
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How to extract reads with no INDEL?
indel samtools sam written 2 days ago by Jeason Rad30 • updated 2 days ago by dariober7.7k
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Searching For Deletion In A Low Number Of Reads
indel mitochondria tophat written 4.7 years ago by Assa Yeroslaviz1.1k • updated 8 days ago by Biostar ♦♦ 10
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Mismatch and Indel statistics from BAM/SAM file
indel bam sam written 11 days ago by sbdk8230 • updated 10 days ago by Brian Bushnell11k
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VCF file PL values for more than 1 alternatives allele
indel vcf snp written 5 weeks ago by bharata1803210 • updated 5 weeks ago by Santosh Anand2.2k
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3
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8 follow
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extract SNP, variants
indel variant calling snp rna-seq mapping written 6 weeks ago by divya.srivastava3310 • updated 6 weeks ago by AB60
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 6 weeks ago by Macspider1.1k • updated 6 weeks ago by Pierre Lindenbaum93k
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is DANN capable of scoring insertion and deletion?
indel genome annotation snp non-coding written 10 weeks ago by fetus000020 • updated 8 weeks ago by Biostar ♦♦ 10
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216
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6 follow
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somatic variant calling with no germline sample
indel snp somatic mutation written 9 weeks ago by Bogdan240 • updated 8 weeks ago by d-cameron640
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169
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Merge SNP & INDEL vcf files
vcf indel snp written 11 weeks ago by mplace10
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 12 weeks ago by Chen470 • updated 12 weeks ago by WouterDeCoster17k
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3
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INDEL left alignment in bam and vcf
indel aligner bowtie bwa blasr written 3 months ago by mark.rose10 • updated 3 months ago by Brian Bushnell11k
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What Are The Next Steps For Processing Indels From Gatk
indel gatk depth-of-coverage filtering written 4.1 years ago by bari140 • updated 3 months ago by Biostar ♦♦ 10
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How to extract information from a VCF file
indel vcf galaxy snp mnp written 5 months ago by ron20 • updated 5 months ago by Macspider1.1k
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Multi-Sample Indel Realignment Using Gatk
indel gatk written 4.5 years ago by Sebastian10 • updated 5 months ago by Biostar ♦♦ 10
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5 follow
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INDEL detection tool recommendation
indel cnv written 5 months ago by nayshool20
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local de novo assembly and split-read alignment at known sites and output bams?
indel snv written 6 months ago by lyz10302012250 • updated 6 months ago by Devon Ryan65k
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IndelRealigner and RealignerTargetCreator for amplicon sequencing
indel amplicon-seq ngs written 6 months ago by kulvait160 • updated 6 months ago by WouterDeCoster17k
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indel preprocessing prior to bam-readcount
indel varscan fpfilter.pl bam-readcount written 7 months ago by Jokhe40 • updated 7 months ago by m.b0
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gold standard for human genome genotyping
indel 1k human genome dataset genotyping written 11 months ago by watermelon10370 • updated 7 months ago by Biostar ♦♦ 10
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gatk base recalibration results for 1000 genomes
indel 1000 genomes snp gatk written 8 months ago by cmo30 • updated 7 months ago by Biostar ♦♦ 10
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Convert INDEL format for use in Annovar
indel annovar insertion-deletion annotation written 8 months ago by User 7754120 • updated 8 months ago by igor4.1k
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493
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samtools mpileup not calling small (6 base) INSERT
indel vcf samtools mpileup prokaryote written 11 months ago by ALchEmiXt1.8k • updated 8 months ago by sb10
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4
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VariantCalling with single sanger read
indel snps variantcalling blast written 8 months ago by Ameerosein70 • updated 8 months ago by WouterDeCoster17k
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