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6
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1.1k
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1
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Question about Base calling for pacbio data
genome indel pacbio snp gatk written 20 months ago by kamel30 • updated 19 months ago by lakhujanivijay5.0k
18
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4
answers
3.8k
views
5 follow
4
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Indel Detection For 454 Resequencing
indel next-gen sequencing written 9.9 years ago by Daniel Swan13k • updated 20 months ago by RamRS27k
23
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4
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9.1k
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11 follow
4
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Indel Left/Right Alignment
indel written 7.2 years ago by sa9830 • updated 20 months ago by hugues.sicotte0
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1
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688
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1
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4
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3
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1.4k
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5 follow
3
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Detecting Homozygous Insertion from Sanger Seq
indel sanger written 22 months ago by justinms10 • updated 22 months ago by trausch1.5k
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485
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0
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using the docker container of cgpPINDEL
indel wgs snv pindel written 23 months ago by Bogdan1000 • updated 22 months ago by Biostar ♦♦ 20
11
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1
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2.8k
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1
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CanĀ“T Find The Snps With Samtools (Only Get Indels)
indel alignment samtools snp written 8.7 years ago by Pilar E.90 • updated 22 months ago by Biostar ♦♦ 20
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1.4k
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9
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1.4k
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1
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6
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518
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5 follow
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How do variant callers get genotype info?
variant calling indel snp phasing written 23 months ago by afzm20 • updated 23 months ago by Jeremy Leipzig19k
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544
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0
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5
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2
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706
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Determine Insertion Sequence
indel assembly alignment sv sequencing written 2.1 years ago by aostern30 • updated 2.1 years ago by d-cameron2.1k
5
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1
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840
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1
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SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 2.1 years ago by Federico Giorgi590 • updated 2.1 years ago by finswimmer13k
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479
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0
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5
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2
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1.5k
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5 follow
2
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Is indel realigning necessary for INDEL discovery?
indel gatk indelrealigner written 2.1 years ago by deepti1rao30 • updated 2.1 years ago by Jorge Amigo11k
6
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2
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778
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6 follow
2
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a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
indel sv snv cnv written 2.2 years ago by Bogdan1000 • updated 2.2 years ago by Eric T.2.6k
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600
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0
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4
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1
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990
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1
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Changing the reference haplotype in VCF
vcf indel alignment snp written 2.2 years ago by Michael Kosicki80 • updated 2.2 years ago by Kevin Blighe59k
0
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0
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802
views
0
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2
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1
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737
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1
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Identifying variants differing between control/treatment
variant-calling gatk indel snp written 2.4 years ago by rmf940 • updated 2.4 years ago by Pierre Lindenbaum128k
2
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809
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0
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Where can I find NGS data with large indels
indel data ngs written 2.5 years ago by yingjin22510 • updated 2.4 years ago by Biostar ♦♦ 20
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697
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0
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Indel heterozygosity frequency
indel snp written 2.5 years ago by hdtms 20
10
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1
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1.2k
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5 follow
1
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Can phasing or pre-phase during basecall cause indel?
indel phasing written 2.5 years ago by CY470 • updated 2.5 years ago by Kevin Blighe59k
0
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702
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0
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0
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1
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616
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1
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how to judge the genotype for the postion with 'rs8175347' ?
indel snp sequencing written 2.5 years ago by kaixian1100 • updated 2.5 years ago by Kevin Blighe59k
0
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0
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993
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0
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Indel: Insertion/Deletion count
indel written 2.5 years ago by hdtms 20
4
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0
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1.5k
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0
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Variant Calling in Low-Complexity Regions
indel low-complexity variants snp varscan written 2.6 years ago by ATpoint34k • updated 2.5 years ago by Biostar ♦♦ 20
18
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3
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2.6k
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3
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3
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2
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1.4k
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 3.2 years ago by Chen990 • updated 2.6 years ago by Biostar ♦♦ 20
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