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52
votes
4
answers
36k
views
30 follow
4
answers
Filtering Vcf File
vcf indel vcftools snp written 7.8 years ago by bioinfo740 • updated 2.6 years ago by DataFanatic200
25
votes
2
answers
14k
views
5 follow
2
answers
Split Vcf File Into Snps And Indels
vcf indel split snp gatk written 7.9 years ago by pablo.riesgo140 • updated 8 days ago by hsiaoyi050450
23
votes
4
answers
9.1k
views
11 follow
4
answers
Indel Left/Right Alignment
indel written 7.2 years ago by sa9830 • updated 21 months ago by hugues.sicotte0
20
votes
4
answers
7.2k
views
10 follow
4
answers
18
votes
4
answers
3.8k
views
5 follow
4
answers
Indel Detection For 454 Resequencing
indel next-gen sequencing written 9.9 years ago by Daniel Swan13k • updated 20 months ago by RamRS27k
16
votes
3
answers
3.5k
views
3
answers
How Best To Add Custom Variation Track To Ucsc Browser?
indel variant snp ucsc written 9.6 years ago by Ian5.6k • updated 9.6 years ago by brentp23k
17
votes
2
answers
9.6k
views
6 follow
2
answers
Merging Vcf Files And Filling In Missing Genotypes
vcf indel merge snp written 9.5 years ago by Allpowerde1.2k • updated 9.4 years ago by Jashapiro230
8
votes
1
answer
3.1k
views
1
answer
What Is Difference Between Gatk And Dindel For Calling Indel
indel gatk written 9.1 years ago by Zhaojing70 • updated 9.1 years ago by Zhaojing10
14
votes
1
answer
6.4k
views
1
answer
Samtools: Local Realignment Around Indel
indel samtools mpileup written 8.9 years ago by Nanada70 • updated 6.3 years ago by Biostar ♦♦ 20
27
votes
2
answers
5.0k
views
2
answers
Programming Challange: Pairwise Alignments To Multiple Alignment
perl indel alignment scripting programming written 9.6 years ago by Rm8.0k • updated 9.6 years ago by Haibao Tang3.0k
13
votes
6
answers
6.4k
views
9 follow
6
answers
Best Way To Compare Output Snp/Indels From Different Software?
indel merge snp output written 9.0 years ago by Hmm500 • updated 9.0 years ago by Bo Peng10
12
votes
2
answers
3.2k
views
6 follow
2
answers
Benchmarking Read Alignment And Variant-Calling Algorithms (For Dummies)
indel alignment algorithm snp written 8.8 years ago by Travis2.8k • updated 8.8 years ago by Torst950
12
votes
2
answers
4.6k
views
10 follow
2
answers
21
votes
2
answers
4.4k
views
6 follow
2
answers
How To Make A Circular Plot Of Snps And Indels ??
indel visualization snp dna written 8.7 years ago by Pilar E.90 • updated 7.2 years ago by Leonor Palmeira3.7k
9
votes
1
answer
2.1k
views
1
answer
Searching For Deletion In A Low Number Of Reads
indel mitochondria tophat written 7.7 years ago by Assa Yeroslaviz1.3k • updated 3.0 years ago by Biostar ♦♦ 20
10
votes
1
answer
4.1k
views
1
answer
5
votes
0
answers
2.8k
views
0
answers
8
votes
1
answer
1.6k
views
1
answer
11
votes
2
answers
3.8k
views
2
answers
Genomic Alignment And Snp/Indel Calling - My First Ever "Pipeline"
indel next-gen snp sequencing written 9.0 years ago by Travis2.8k • updated 4.3 years ago by Biostar ♦♦ 20
13
votes
2
answers
4.2k
views
7 follow
2
answers
Calculating Tn (True Negatives) For An Indel Detection Method
indel written 8.3 years ago by Pascal1.5k • updated 8.3 years ago by Michael Dondrup47k
6
votes
1
answer
2.1k
views
1
answer
15
votes
2
answers
15k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 9.2 years ago by Ian5.6k • updated 9.2 years ago by lh332k
6
votes
1
answer
4.2k
views
1
answer
5
votes
2
answers
3.9k
views
2
answers
12
votes
1
answer
2.0k
views
1
answer
11
votes
1
answer
2.8k
views
1
answer
CanĀ“T Find The Snps With Samtools (Only Get Indels)
indel alignment samtools snp written 8.8 years ago by Pilar E.90 • updated 22 months ago by Biostar ♦♦ 20
3
votes
0
answers
2.5k
views
0
answers
Reducing False Positive Indel Calls From Pindel
indel somatic variant pindel written 8.5 years ago by Rlong340 • updated 12 months ago by isaacpei0
16
votes
2
answers
4.7k
views
2
answers
Frequency Of Homozygous Indels Vs Heterozygous Indels
indel genome variant written 8.4 years ago by Pascal1.5k • updated 8.4 years ago by lh332k
10
votes
2
answers
2.6k
views
2
answers
Is There A Convention For Representing Indels In Diploid Genome Sequences?
indel sequence written 8.3 years ago by Jeremy Leipzig19k • updated 6.3 years ago by Biostar ♦♦ 20
5
votes
1
answer
1.6k
views
1
answer
What Do You Do With Indels Data?
indel analysis written 8.1 years ago by User 200570 • updated 13 months ago by Biostar ♦♦ 20
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