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Recent Votes
- ObjTables: tools for creating and reusing high-quality spreadsheets (e.g., supplementary tables to articles)
- ObjTables: tools for creating and reusing high-quality spreadsheets (e.g., supplementary tables to articles)
- C: Adding gene set to GSVA
- C: Adding gene set to GSVA
- C: Trouble with choosing the right reference transcriptome file for mm10
- C: gsnap vs bbmap
- A: PCA: summarize results from principal components analysis and look for populatio
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Recent Replies
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C: ObjTables: tools for creating and reusing high-quality spreadsheets (e.g., suppl by
Jeremy Leipzig ♦ 19k
This looks super interesting. Can you compare ObjTables to Frictionless Data?
-
C: Query a public sql server from within python by
genomax ♦ 87k
Can you do this as a subprocess/system call ([LINK][1])? [1]: https://stackoverflow.com/quest...
-
C: Adding gene set to GSVA by
igor ♦ 11k
The problem is you are trying to convert it to a `GeneSetCollection` object. You don't need to do...
-
C: DE analysis with limma (What to include in the model?) by
Davide • 10
I agree on the points Kevin is making. What are the DEG after using "adjusted p-values" for both ...
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C: How to analyze Illumina RNASeq data by
Manoj • 50
Hi, I am trying following command, however it is showing error. Please correct me, I am pretty ne...
-
A: Is a compositional bias in Sequence Content of initial bases in WES reads normal by
andres.firrincieli • 630
I am not a WES expert but that is pretty normal for [RNA-seq data][1] [1]: https://www.biosta...
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C: Is a compositional bias in Sequence Content of initial bases in WES reads normal by
genomax ♦ 87k
If these were created using Nextera type (tagmentation) libraries then yes. See [this paper (][1]...
-
C: contamination with barcodes in 3' prime end (R2)- 10x libraries by
swbarnes2 ♦ 8.1k
Cellranger uses STAR, which in my experience is robust to that kind of problem. It will soft cli...
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C: Getting total sequenced megabases for each sample by
genomax ♦ 87k
> But this is for whole cohort Are you sure because your para says this: > A single libra...
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C: Correct use of bash wildcards by
caro-ca • 20
Thank you for your reply. I tried: for dir in /hosts/strains/SRR*/results; do for file in ...
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C: Getting total sequenced megabases for each sample by
RamRS ♦ 28k
Like genomax said, it's your call to make.
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C: Correct use of bash wildcards by
lieven.sterck ♦ 8.2k
at first sight you will need a double loop for this, fist loop all dirs and for each loop all files
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