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5
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5 follow
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Remove duplicate lines based on specific columns
reads R intersect python written 10 weeks ago by dzisis1986 • 20 • updated 10 weeks ago by RamRS ♦ 19k
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242
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bedtools intersect issue
bedtools intersect bed file written 3 months ago by elisheva • 70 • updated 3 months ago by Biostar ♦♦ 20
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1
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2.4k
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1
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Merging And De-Duplicating Structural Variant Calls (Bedpe)
intersect structural written 7.5 years ago by Stephane Plaisance • 380 • updated 4 months ago by Biostar ♦♦ 20
2
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1
answer
352
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1
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bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 4 months ago by dansapozhnikov • 10 • updated 4 months ago by Alex Reynolds ♦ 26k
6
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1
answer
237
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1
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Annotating bed files with Crosslinking induced truncations sites from iCLIP experiment (chromosome locations).
bedtools cits intersect iclip annotate written 4 months ago by CrisMar • 70 • updated 4 months ago by Pierre Lindenbaum ♦ 115k
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3
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511
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3
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 5 months ago by goodez • 420 • updated 5 months ago by Alex Reynolds ♦ 26k
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3
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333
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3
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Intersect counts with fragment regions
bedtools R intersect ranges readcounts written 5 months ago by dzisis1986 • 20 • updated 5 months ago by Alex Reynolds ♦ 26k
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1
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268
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1
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Multiple ways to make an IntersectBed on bed file after peak calling : which one is the good one ??
peak calling ngs intersect written 6 months ago by anais1396 • 20 • updated 6 months ago by ATpoint ♦ 11k
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250
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how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 8 months ago by Zee_S • 20
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1
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425
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1
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 8 months ago by Noam Teyssier • 10 • updated 8 months ago by Kevin Blighe ♦ 33k
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2
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636
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2
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intersection, Bed file and VCF.
bedtools vcf intersect orfs variant calling written 9 months ago by jaqx008 • 40
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1
answer
291
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1
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bedops -u does not work properly
bed bedops intersect written 11 months ago by Ming Tang • 2.4k • updated 11 months ago by Alex Reynolds ♦ 26k
2
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4
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548
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4
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False output when intersecting methylation data
multiintersect intersect wgbs written 14 months ago by theodore • 40 • updated 14 months ago by Alex Reynolds ♦ 26k
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1
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1
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Bedtools intersect a position in a range
bedtools intersect written 3.5 years ago by christylynn002 • 0 • updated 15 months ago by Biostar ♦♦ 20
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628
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detecting overlapping CNV from 2 algorithms
bedtools intersect r-gada penncnv cnv written 16 months ago by Myosotis1979 • 10
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1
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1.2k
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1
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Intersect multiple VCF files
vcf bedtools intersect vcftools snp written 18 months ago by ciemanek • 110 • updated 18 months ago by Brian Bushnell ♦ 16k
2
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0
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1.1k
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 18 months ago by ciemanek • 110 • updated 18 months ago by Pierre Lindenbaum ♦ 115k
2
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1
answer
646
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1
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Getting intersect between three tables of genes in Rstudio
R intersect rstudio written 19 months ago by snar86 • 0 • updated 19 months ago by Santosh Anand • 4.3k
1
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1
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616
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1
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multiIntersectBed for SNPs, need to compare but not merge intervals
bedtools intersect snp written 23 months ago by Adrian Pelin • 2.2k • updated 23 months ago by Alex Reynolds ♦ 26k
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bedtools intersect + subtract not adding up to original file?
bedtools bed intersect subtract written 2.2 years ago by asperlea • 0 • updated 2.2 years ago by harold.smith.tarheel • 4.2k
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2
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COmparing two SNV vcf files using bedtools
vcf bedtools intersect written 2.5 years ago by panbar • 20 • updated 2.5 years ago by jasper1918 • 10
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2
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1.2k
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2
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Prioritize structural variation (SV) callings supported by multiple softwares
sv intersect structural variation written 2.7 years ago by michealsmith • 740 • updated 2.6 years ago by QVINTVS_FABIVS_MAXIMVS • 2.2k
4
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1
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1.0k
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1
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Histone modification peaks to compare with my ChIP-seq peaks
histone modifications intersect chip-seq written 2.7 years ago by fhassanz • 10 • updated 2.7 years ago by jotan • 1.2k
11
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4
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2.1k
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4
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Intersect multiple BED files
bed intersect written 2.9 years ago by int11ap1 • 310 • updated 2.9 years ago by Aaronquinlan ♦ 10k
2
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1
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3.4k
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1
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Bedtools Intersect Error
bedtools intersect error written 3.1 years ago by dally • 160
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3
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2.6k
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3
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How To Pile Up Multiple Bed Files Into 1 File
bed intersect sam bam pileup written 6.6 years ago by Hanfei Sun • 60 • updated 3.2 years ago by Biostar ♦♦ 20
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1
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1.4k
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1
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vcf files generated from intersection/union of multiple callers
vcf merge intersect union written 3.2 years ago by lheisler.bioinformatics • 0 • updated 3.2 years ago by Zev.Kronenberg ♦ 11k
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1.0k
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bedtools intersect without range
bedtools intersect written 3.3 years ago by christylynn002 • 0
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1.3k
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bedtools intersect -c flag output
bedtools intersect written 3.3 years ago by bruce.moran • 420
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2
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1.5k
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2
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Best to overlap hundreds of BED files to one master BED file?
overlap bed intersect written 3.4 years ago by Ian ♦ 5.3k • updated 3.4 years ago by Alex Reynolds ♦ 26k
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