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<prev • 66 results • page 1 of 3 • next >
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intersection of two GFFs
bedtools gff intersect written 7 weeks ago by BioDH • 0 • updated 20 days ago by Biostar ♦♦ 20
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5 follow
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 2.1 years ago by goodez • 480 • updated 8 weeks ago by Biostar ♦♦ 20
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Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 files
bedtools intersect bed file written 8 months ago by camerond • 150 • updated 3 months ago by jrmerritt6 • 0
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bedtools usage to extract the non overlaps between two gtfs
gtf bedtools intersect mitranscriptome lncrna written 3 months ago by newbie • 70
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Customize bedtools intersect output
bedtools bed intersect written 5 months ago by RamRS ♦ 28k
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bcftools isec -n operators
intersect bcftools written 6 months ago by Begonia_pavonina • 20
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error reading bed files for bedtools intersect
bedtools intersect written 6 months ago by rthapa • 10 • updated 6 months ago by Pierre Lindenbaum ♦ 129k
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Getting error with awk when using parallel processing in bedtools
bedtools intersect parallel written 13 months ago by nastaran.esfahani • 10 • updated 13 months ago by ATpoint ♦ 36k
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how extract our desirable data from two table?
bedtools R intersect genomecoveragebed overlaps written 15 months ago by star • 240 • updated 15 months ago by archana.bioinfo87 • 180
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How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 17 months ago by star • 240 • updated 17 months ago by Biostar ♦♦ 20
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Non Overlaps in bedtools intersect
bedtools intersect iclip nonoverlaps written 17 months ago by CrisMar • 70 • updated 17 months ago by Biostar ♦♦ 20
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Merge the same coordinate in a table?
bedtools merge intersect genomics written 17 months ago by star • 240 • updated 17 months ago by zx8754 ♦ 9.4k
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bedtools intersect error?
bedtools intersect chip-seq written 17 months ago by star • 240
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Remove duplicate lines based on specific columns
reads R intersect python written 22 months ago by dzisis1986 • 20 • updated 22 months ago by RamRS ♦ 28k
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bedtools intersect issue
bedtools intersect bed file written 23 months ago by elisheva • 100 • updated 23 months ago by Biostar ♦♦ 20
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Merging And De-Duplicating Structural Variant Calls (Bedpe)
intersect structural written 9.1 years ago by Stephane Plaisance • 410 • updated 23 months ago by Biostar ♦♦ 20
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bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 24 months ago by dansapozhnikov • 10 • updated 24 months ago by Alex Reynolds ♦ 30k
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Annotating bed files with Crosslinking induced truncations sites from iCLIP experiment (chromosome locations).
bedtools cits intersect iclip annotate written 2.0 years ago by CrisMar • 70 • updated 2.0 years ago by Pierre Lindenbaum ♦ 129k
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Intersect counts with fragment regions
bedtools R intersect ranges readcounts written 2.1 years ago by dzisis1986 • 20 • updated 2.1 years ago by Alex Reynolds ♦ 30k
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Multiple ways to make an IntersectBed on bed file after peak calling : which one is the good one ??
peak calling ngs intersect written 2.2 years ago by anais1396 • 30 • updated 2.2 years ago by ATpoint ♦ 36k
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how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 2.3 years ago by Zee_S • 50
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 2.3 years ago by Noam Teyssier • 80 • updated 2.3 years ago by Kevin Blighe ♦ 63k
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intersection, Bed file and VCF.
bedtools vcf intersect orfs variant calling written 2.4 years ago by jaqx008 • 70
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bedops -u does not work properly
bed bedops intersect written 2.6 years ago by Ming Tang • 2.6k • updated 2.6 years ago by Alex Reynolds ♦ 30k
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False output when intersecting methylation data
multiintersect intersect wgbs written 2.9 years ago by theodore • 60 • updated 2.9 years ago by Alex Reynolds ♦ 30k
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Bedtools intersect a position in a range
bedtools intersect written 5.2 years ago by christylynn002 • 0 • updated 2.9 years ago by Biostar ♦♦ 20
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detecting overlapping CNV from 2 algorithms
bedtools intersect r-gada penncnv cnv written 3.0 years ago by Myosotis1979 • 10
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Intersect multiple VCF files
vcf bedtools intersect vcftools snp written 3.2 years ago by ciemanek • 140 • updated 3.1 years ago by Brian Bushnell ♦ 17k
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 3.1 years ago by ciemanek • 140 • updated 3.1 years ago by Pierre Lindenbaum ♦ 129k
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Getting intersect between three tables of genes in Rstudio
R intersect rstudio written 3.2 years ago by snar86 • 10 • updated 3.2 years ago by Santosh Anand ♦ 5.1k
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