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4
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1
answer
83
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1
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Customize bedtools intersect output
bedtools bed intersect written 22 days ago by RamRS ♦ 26k
4
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0
answers
141
views
0
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bcftools isec -n operators
intersect bcftools written 10 weeks ago by Begonia_pavonina • 10
0
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2
answers
178
views
2
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error reading bed files for bedtools intersect
bedtools intersect written 10 weeks ago by rthapa • 0 • updated 10 weeks ago by Pierre Lindenbaum ♦ 127k
2
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2
answers
173
views
2
answers
Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 files
bedtools intersect bed file written 4 months ago by camerond • 150
3
votes
1
answer
309
views
1
answer
Getting error with awk when using parallel processing in bedtools
bedtools intersect parallel written 9 months ago by nastaran.esfahani • 10 • updated 9 months ago by ATpoint ♦ 31k
0
votes
1
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309
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1
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how extract our desirable data from two table?
bedtools R intersect genomecoveragebed overlaps written 11 months ago by star • 230 • updated 11 months ago by archana.bioinfo87 • 180
8
votes
1
answer
468
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1
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How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 12 months ago by star • 230 • updated 12 months ago by Biostar ♦♦ 20
0
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0
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538
views
0
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Non Overlaps in bedtools intersect
bedtools intersect iclip nonoverlaps written 13 months ago by CrisMar • 70 • updated 13 months ago by Biostar ♦♦ 20
9
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2
answers
413
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2
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Merge the same coordinate in a table?
bedtools merge intersect genomics written 13 months ago by star • 230 • updated 13 months ago by zx8754 ♦ 9.1k
12
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0
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846
views
0
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bedtools intersect error?
bedtools intersect chip-seq written 13 months ago by star • 230
5
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1.0k
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5 follow
0
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Remove duplicate lines based on specific columns
reads R intersect python written 18 months ago by dzisis1986 • 20 • updated 18 months ago by RamRS ♦ 26k
0
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0
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540
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0
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bedtools intersect issue
bedtools intersect bed file written 19 months ago by elisheva • 100 • updated 18 months ago by Biostar ♦♦ 20
4
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1
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3.0k
views
1
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Merging And De-Duplicating Structural Variant Calls (Bedpe)
intersect structural written 8.8 years ago by Stephane Plaisance • 410 • updated 19 months ago by Biostar ♦♦ 20
2
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1
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841
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1
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bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 19 months ago by dansapozhnikov • 10 • updated 19 months ago by Alex Reynolds ♦ 29k
6
votes
1
answer
608
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1
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Annotating bed files with Crosslinking induced truncations sites from iCLIP experiment (chromosome locations).
bedtools cits intersect iclip annotate written 20 months ago by CrisMar • 70 • updated 20 months ago by Pierre Lindenbaum ♦ 127k
11
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3
answers
1.9k
views
5 follow
3
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 21 months ago by goodez • 470 • updated 21 months ago by Alex Reynolds ♦ 29k
1
vote
3
answers
828
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3
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Intersect counts with fragment regions
bedtools R intersect ranges readcounts written 21 months ago by dzisis1986 • 20 • updated 21 months ago by Alex Reynolds ♦ 29k
0
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1
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909
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1
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Multiple ways to make an IntersectBed on bed file after peak calling : which one is the good one ??
peak calling ngs intersect written 21 months ago by anais1396 • 20 • updated 21 months ago by ATpoint ♦ 31k
0
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0
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520
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0
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how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 23 months ago by Zee_S • 50
1
vote
1
answer
998
views
1
answer
Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 23 months ago by Noam Teyssier • 80 • updated 23 months ago by Kevin Blighe ♦ 56k
0
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2
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1.5k
views
2
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intersection, Bed file and VCF.
bedtools vcf intersect orfs variant calling written 2.1 years ago by jaqx008 • 70
4
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1
answer
614
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1
answer
bedops -u does not work properly
bed bedops intersect written 2.2 years ago by Ming Tang • 2.5k • updated 2.2 years ago by Alex Reynolds ♦ 29k
2
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4
answers
840
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4
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False output when intersecting methylation data
multiintersect intersect wgbs written 2.5 years ago by theodore • 60 • updated 2.5 years ago by Alex Reynolds ♦ 29k
2
votes
1
answer
1.5k
views
1
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Bedtools intersect a position in a range
bedtools intersect written 4.8 years ago by christylynn002 • 0 • updated 2.5 years ago by Biostar ♦♦ 20
0
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0
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1.0k
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0
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detecting overlapping CNV from 2 algorithms
bedtools intersect r-gada penncnv cnv written 2.6 years ago by Myosotis1979 • 10
3
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1
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2.0k
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1
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Intersect multiple VCF files
vcf bedtools intersect vcftools snp written 2.8 years ago by ciemanek • 130 • updated 2.8 years ago by Brian Bushnell ♦ 17k
2
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0
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2.1k
views
0
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 2.8 years ago by ciemanek • 130 • updated 2.8 years ago by Pierre Lindenbaum ♦ 127k
3
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1
answer
1.6k
views
6 follow
1
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Getting intersect between three tables of genes in Rstudio
R intersect rstudio written 2.9 years ago by snar86 • 10 • updated 2.9 years ago by Santosh Anand ♦ 5.0k
1
vote
1
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817
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1
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multiIntersectBed for SNPs, need to compare but not merge intervals
bedtools intersect snp written 3.2 years ago by Adrian Pelin • 2.4k • updated 3.2 years ago by Alex Reynolds ♦ 29k
0
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0
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1.6k
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0
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bedtools intersect + subtract not adding up to original file?
bedtools bed intersect subtract written 3.5 years ago by asperlea • 0 • updated 3.5 years ago by harold.smith.tarheel • 4.5k
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