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3
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1
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146
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1
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Getting error with awk when using parallel processing in bedtools
bedtools intersect parallel written 3 months ago by nastaran.esfahani • 10 • updated 3 months ago by ATpoint ♦ 24k
0
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1
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205
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1
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how extract our desirable data from two table?
bedtools R intersect genomecoveragebed overlaps written 5 months ago by star • 190 • updated 5 months ago by archana.bioinfo87 • 170
8
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1
answer
359
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1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 7 months ago by star • 190 • updated 7 months ago by Biostar ♦♦ 20
0
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0
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327
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0
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Non Overlaps in bedtools intersect
bedtools intersect iclip nonoverlaps written 7 months ago by CrisMar • 70 • updated 7 months ago by Biostar ♦♦ 20
9
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2
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263
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2
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Merge the same coordinate in a table?
bedtools merge intersect genomics written 7 months ago by star • 190 • updated 7 months ago by zx8754 ♦ 8.2k
12
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0
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532
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0
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bedtools intersect error?
bedtools intersect chip-seq written 7 months ago by star • 190
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652
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5 follow
0
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Remove duplicate lines based on specific columns
reads R intersect python written 12 months ago by dzisis1986 • 20 • updated 12 months ago by RamRS ♦ 24k
0
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0
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445
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0
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bedtools intersect issue
bedtools intersect bed file written 13 months ago by elisheva • 80 • updated 13 months ago by Biostar ♦♦ 20
4
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1
answer
2.8k
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1
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Merging And De-Duplicating Structural Variant Calls (Bedpe)
intersect structural written 8.3 years ago by Stephane Plaisance • 410 • updated 14 months ago by Biostar ♦♦ 20
2
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1
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687
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1
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bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 14 months ago by dansapozhnikov • 10 • updated 14 months ago by Alex Reynolds ♦ 29k
6
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1
answer
485
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1
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Annotating bed files with Crosslinking induced truncations sites from iCLIP experiment (chromosome locations).
bedtools cits intersect iclip annotate written 14 months ago by CrisMar • 70 • updated 14 months ago by Pierre Lindenbaum ♦ 123k
6
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3
answers
1.4k
views
3
answers
Find consensus overlap between many bed files
genome bedtools intersect overlap written 15 months ago by goodez • 460 • updated 15 months ago by Alex Reynolds ♦ 29k
1
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3
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669
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3
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Intersect counts with fragment regions
bedtools R intersect ranges readcounts written 16 months ago by dzisis1986 • 20 • updated 16 months ago by Alex Reynolds ♦ 29k
0
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1
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680
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1
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Multiple ways to make an IntersectBed on bed file after peak calling : which one is the good one ??
peak calling ngs intersect written 16 months ago by anais1396 • 20 • updated 16 months ago by ATpoint ♦ 24k
0
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0
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437
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0
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how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 18 months ago by Zee_S • 40
1
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1
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827
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1
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 18 months ago by Noam Teyssier • 80 • updated 18 months ago by Kevin Blighe ♦ 49k
0
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2
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1.2k
views
2
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intersection, Bed file and VCF.
bedtools vcf intersect orfs variant calling written 19 months ago by jaqx008 • 60
4
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1
answer
498
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1
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bedops -u does not work properly
bed bedops intersect written 21 months ago by Ming Tang • 2.5k • updated 21 months ago by Alex Reynolds ♦ 29k
2
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4
answers
753
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4
answers
False output when intersecting methylation data
multiintersect intersect wgbs written 2.1 years ago by theodore • 50 • updated 2.1 years ago by Alex Reynolds ♦ 29k
2
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1
answer
1.4k
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1
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Bedtools intersect a position in a range
bedtools intersect written 4.4 years ago by christylynn002 • 0 • updated 2.1 years ago by Biostar ♦♦ 20
0
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0
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902
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0
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detecting overlapping CNV from 2 algorithms
bedtools intersect r-gada penncnv cnv written 2.2 years ago by Myosotis1979 • 10
3
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1
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1.7k
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1
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Intersect multiple VCF files
vcf bedtools intersect vcftools snp written 2.4 years ago by ciemanek • 130 • updated 2.3 years ago by Brian Bushnell ♦ 16k
2
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0
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1.7k
views
0
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 2.3 years ago by ciemanek • 130 • updated 2.3 years ago by Pierre Lindenbaum ♦ 123k
2
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1
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1.3k
views
1
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Getting intersect between three tables of genes in Rstudio
R intersect rstudio written 2.4 years ago by snar86 • 0 • updated 2.4 years ago by Santosh Anand ♦ 4.9k
1
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1
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757
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1
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multiIntersectBed for SNPs, need to compare but not merge intervals
bedtools intersect snp written 2.8 years ago by Adrian Pelin • 2.3k • updated 2.8 years ago by Alex Reynolds ♦ 29k
0
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0
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1.4k
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0
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bedtools intersect + subtract not adding up to original file?
bedtools bed intersect subtract written 3.1 years ago by asperlea • 0 • updated 3.1 years ago by harold.smith.tarheel • 4.4k
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2
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1.4k
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2
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COmparing two SNV vcf files using bedtools
vcf bedtools intersect written 3.4 years ago by panbar • 20 • updated 3.4 years ago by jasper1918 • 10
2
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2
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1.4k
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2
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Prioritize structural variation (SV) callings supported by multiple softwares
sv intersect structural variation written 3.5 years ago by michealsmith • 740 • updated 3.4 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k
4
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1
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1.3k
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1
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Histone modification peaks to compare with my ChIP-seq peaks
histone modifications intersect chip-seq written 3.5 years ago by fhassanz • 10 • updated 3.5 years ago by jotan • 1.2k
11
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4
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2.9k
views
4
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Intersect multiple BED files
bed intersect written 3.8 years ago by int11ap1 • 360 • updated 3.8 years ago by Aaronquinlan ♦ 11k
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