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<prev • 59 results • page 1 of 2 • next >
0
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1
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128
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how extract our desirable data from two table?
bedtools R intersect genomecoveragebed overlaps written 8 weeks ago by star • 150 • updated 8 weeks ago by archana.bioinfo87 • 120
8
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1
answer
294
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1
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How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 3 months ago by star • 150 • updated 3 months ago by Biostar ♦♦ 20
0
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202
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0
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Non Overlaps in bedtools intersect
bedtools intersect iclip nonoverlaps written 4 months ago by CrisMar • 70 • updated 3 months ago by Biostar ♦♦ 20
9
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2
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199
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2
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Merge the same coordinate in a table?
bedtools merge intersect genomics written 4 months ago by star • 150 • updated 4 months ago by zx8754 ♦ 7.5k
12
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0
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361
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0
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bedtools intersect error?
bedtools intersect chip-seq written 4 months ago by star • 150
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466
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5 follow
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Remove duplicate lines based on specific columns
reads R intersect python written 8 months ago by dzisis1986 • 20 • updated 8 months ago by RamRS ♦ 22k
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375
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bedtools intersect issue
bedtools intersect bed file written 9 months ago by elisheva • 70 • updated 9 months ago by Biostar ♦♦ 20
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1
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2.7k
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1
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Merging And De-Duplicating Structural Variant Calls (Bedpe)
intersect structural written 8.0 years ago by Stephane Plaisance • 400 • updated 10 months ago by Biostar ♦♦ 20
2
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1
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1
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bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 10 months ago by dansapozhnikov • 10 • updated 10 months ago by Alex Reynolds ♦ 28k
6
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1
answer
408
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1
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Annotating bed files with Crosslinking induced truncations sites from iCLIP experiment (chromosome locations).
bedtools cits intersect iclip annotate written 11 months ago by CrisMar • 70 • updated 11 months ago by Pierre Lindenbaum ♦ 121k
6
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3
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1.1k
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3
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 12 months ago by goodez • 460 • updated 12 months ago by Alex Reynolds ♦ 28k
1
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3
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567
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3
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Intersect counts with fragment regions
bedtools R intersect ranges readcounts written 12 months ago by dzisis1986 • 20 • updated 12 months ago by Alex Reynolds ♦ 28k
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1
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505
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1
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Multiple ways to make an IntersectBed on bed file after peak calling : which one is the good one ??
peak calling ngs intersect written 12 months ago by anais1396 • 20 • updated 12 months ago by ATpoint ♦ 18k
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379
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how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 14 months ago by Zee_S • 30
1
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1
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698
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1
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 14 months ago by Noam Teyssier • 70 • updated 14 months ago by Kevin Blighe ♦ 44k
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2
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1.0k
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2
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intersection, Bed file and VCF.
bedtools vcf intersect orfs variant calling written 15 months ago by jaqx008 • 40
4
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1
answer
430
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1
answer
bedops -u does not work properly
bed bedops intersect written 17 months ago by Ming Tang • 2.5k • updated 17 months ago by Alex Reynolds ♦ 28k
2
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4
answers
686
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4
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False output when intersecting methylation data
multiintersect intersect wgbs written 21 months ago by theodore • 40 • updated 21 months ago by Alex Reynolds ♦ 28k
2
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1
answer
1.3k
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1
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Bedtools intersect a position in a range
bedtools intersect written 4.0 years ago by christylynn002 • 0 • updated 21 months ago by Biostar ♦♦ 20
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0
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816
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detecting overlapping CNV from 2 algorithms
bedtools intersect r-gada penncnv cnv written 22 months ago by Myosotis1979 • 10
1
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1
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1.6k
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1
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Intersect multiple VCF files
vcf bedtools intersect vcftools snp written 2.1 years ago by ciemanek • 110 • updated 2.0 years ago by Brian Bushnell ♦ 16k
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0
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1.5k
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0
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 2.0 years ago by ciemanek • 110 • updated 2.0 years ago by Pierre Lindenbaum ♦ 121k
2
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1
answer
955
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1
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Getting intersect between three tables of genes in Rstudio
R intersect rstudio written 2.1 years ago by snar86 • 0 • updated 2.1 years ago by Santosh Anand ♦ 4.8k
1
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1
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717
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1
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multiIntersectBed for SNPs, need to compare but not merge intervals
bedtools intersect snp written 2.5 years ago by Adrian Pelin • 2.3k • updated 2.5 years ago by Alex Reynolds ♦ 28k
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bedtools intersect + subtract not adding up to original file?
bedtools bed intersect subtract written 2.8 years ago by asperlea • 0 • updated 2.8 years ago by harold.smith.tarheel • 4.4k
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2
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1.3k
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COmparing two SNV vcf files using bedtools
vcf bedtools intersect written 3.1 years ago by panbar • 20 • updated 3.1 years ago by jasper1918 • 10
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2
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1.4k
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2
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Prioritize structural variation (SV) callings supported by multiple softwares
sv intersect structural variation written 3.2 years ago by michealsmith • 740 • updated 3.1 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k
4
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1
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1.2k
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1
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Histone modification peaks to compare with my ChIP-seq peaks
histone modifications intersect chip-seq written 3.2 years ago by fhassanz • 10 • updated 3.2 years ago by jotan • 1.2k
11
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4
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2.6k
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4
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Intersect multiple BED files
bed intersect written 3.4 years ago by int11ap1 • 350 • updated 3.4 years ago by Aaronquinlan ♦ 11k
2
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1
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4.0k
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1
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Bedtools Intersect Error
bedtools intersect error written 3.7 years ago by dally • 180
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