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Problem with UpSetR result

intersections upsetr upset written 11 days ago by Raheleh • 120 • updated 11 days ago by russhh • 4.9k

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Intersection 5 sets of genes and retrieval of specific subsets

genes R intersections written 22 months ago by lessismore • 720 • updated 22 months ago by noorpratap.singh • 280

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Recent Replies

A: Question about scRNA-seq by jared.andrews07 • 4.2k
Would be more useful to see the UMAP colored by your timepoints to see if there are any differenc...
C: chromosome X and Y GWAS results by WouterDeCoster ♦ 42k
I would suggest searching the gwas catalog at https://www.ebi.ac.uk/gwas/
A: QUAST ignoring bam files by liorglic • 130
Turns out it's a QUAST bug, which the developers have now fixed. The fix should be included in th...
A: Help with converting gene symbols to gene IDs by Ahill • 1.7k
mapIds manual indicates it allows submission of multiple keys, as opposed to one-by-one, and usin...
C: Annovar in hg19 mode by RamRS ♦ 25k
I don't think that will be a problem, GRCh37 and hg19 are interchangeable in this context.
C: differential expression with Seurat by RamRS ♦ 25k
Have you tried following any of the vignettes on the Satija Lab website? What effort have you inv...
C: differential expression with Seurat by michelle.piquet • 10
I have just loaded each count file into Seurat. Now, I'm trying to combine all treated and untrea...
C: differential expression with Seurat by RamRS ♦ 25k
What have you tried? Can you point us to some of the manuals you've tried?
C: Help with converting gene symbols to gene IDs by RamRS ♦ 25k
Try using `apply` (or even better, `mclapply`) instead of using a loop.
A: Is UniProt part of the browser release agreement? by genomax ♦ 75k
[UniProt database][1] is described in this special NAR database issue publication. That paper is ...
C: Help with converting gene symbols to gene IDs by nattzy94 • 10
Yes, it works but takes a long time.
C: Help with converting gene symbols to gene IDs by RamRS ♦ 25k
If you've verified this command works as you expect it to (by, say, running it on ten rows instea...

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