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Defining exons, UTRs, introns and intergenic regions using "overlap" in Ensemble REST API
genomic coordinates exon ensemble rest api intron written 7 days ago by Maria • 10
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How The Non-Canonical Intron Splice Sites Came Out?
intron written 5.9 years ago by bill-zt • 40 • updated 4 months ago by Biostar ♦♦ 20
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Variants in Exon or Intron
exon variant intron written 6 months ago by zakkaknadine • 10 • updated 6 months ago by shawn.w.foley • 1.1k
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How does an intron variant affect the overall gene expression?
gene intron snp written 7 months ago by vahid.atabaigi • 0 • updated 7 months ago by pltbiotech_tkarthi • 170
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5 follow
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How to extract intronic regions from a Genbank file?
genome python intron extract written 10 months ago by Evergreen • 0 • updated 9 months ago by Alex Reynolds ♦ 29k
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2
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Finding exons and introns sequences
genome ensembl sequence exon intron written 12 months ago by elisheva • 80 • updated 12 months ago by vkkodali • 1.3k
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Tools to construct gene model
domain intron gene model exon written 15 months ago by Genetics • 1.5k • updated 15 months ago by Kevin Blighe ♦ 51k
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gene predicted by GeneWise
genewise gene prediction intron written 21 months ago by xiachujing • 0
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5 follow
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Get Introns from a gft annotation file
intron rna-seq written 2.7 years ago by xd_d • 90 • updated 21 months ago by Saber HQ • 20
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Bulk download introns, exons, and UTR regions from Ensembl for gene prediction training set
annotation sequence intron exon ensembl written 22 months ago by Katherine Huang • 0 • updated 22 months ago by Brian Gudenas • 90
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3
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6 follow
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Any tools to quantify intron retention in RNAseq data?
rnaseq R intron retention rna-seq written 5.5 years ago by lkmklsmn • 890 • updated 22 months ago by lhdcsu • 20
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6 follow
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Intron size from gtf/gff file ?
annotation intron written 24 months ago by Picasa • 470 • updated 24 months ago by Hussain Ather • 940
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Intronic Variant Filtering
intron snp variantcalling written 2.3 years ago by cvu • 140 • updated 2.3 years ago by Samuel Brady • 300
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How to splice introne sequences for each transcript.
genome bedtools sequence intron fasta written 2.5 years ago by Tim Padvitski • 0 • updated 2.5 years ago by WouterDeCoster ♦ 42k
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Trendline Of Chipseq Read Values In Intron Regions
R intron chipseq written 6.8 years ago by daniel.soronellas • 330 • updated 2.5 years ago by Biostar ♦♦ 20
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Get introns in bam format from alignment reads result
intron rna-seq written 2.7 years ago by xd_d • 90
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687
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Help me with my GFFex results
gff intron intergenic written 3.3 years ago by elfkatzenbr • 0 • updated 2.8 years ago by Biostar ♦♦ 20
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How to parse GFF3 file to get introns number and length from CDS coordinates?
gene gff3 intron python written 2.8 years ago by organizacja7 • 0
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3
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Enhancers in Introns
gene enhancer intron human written 3.1 years ago by kyeemon7 • 0 • updated 3.1 years ago by ajsn6c • 0
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How to know intron lenghts
intron star rna-seq written 3.1 years ago by jmramos.bio • 10 • updated 3.1 years ago by i.sudbery ♦ 6.2k
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Downloading all introns from Ensembl for Grch37
ensembl intron introns homo sapiens perl api written 3.3 years ago by mmacd • 20 • updated 3.3 years ago by igor ♦ 8.8k
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findings start and stop position of a intron
gene snps position plink intron written 3.4 years ago by avari • 80
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Trying to get a distribution of Exon lengths and Intron lengths.
gene ensembl sequence exon intron written 3.4 years ago by remi.b.md • 60
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Detecting a small set of given Intron-Exon junctions in a RNA-Seq dataset
exon intron rna-seq junction written 3.5 years ago by Pierre Lindenbaum ♦ 124k • updated 3.5 years ago by Malachi Griffith ♦ 18k
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Genome Music Evalutation Of Non-Coding / Intergenic Regions
genome intron music written 6.3 years ago by DoubleD • 130 • updated 3.5 years ago by Biostar ♦♦ 20
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How To Download All The Introns From Ucsc
fasta assembly intron download ucsc written 7.9 years ago by Anima Mundi • 2.5k • updated 3.6 years ago by Biostar ♦♦ 20
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mm9 genomic annotation UTR, Codon, Promoter
3'utr promoter 5'utr exons intron written 4.8 years ago by kanwarjag • 1.0k • updated 3.7 years ago by cooleel • 0
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5 follow
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Working Out The Number Of Introns In A Gene Given The Number Of Exons
intron written 7.5 years ago by garyfox111 • 0 • updated 3.8 years ago by Biostar ♦♦ 20
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2.9k
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How to find intron co-ordinates from the gff file?
bedtools gff open intron written 4.0 years ago by Chirag Parsania • 1.7k • updated 4.0 years ago by Devon Ryan ♦ 92k
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18 follow
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Bed File With Introns Only
ucsc bed intron browser written 8.1 years ago by Pfs • 500 • updated 4.1 years ago by #### • 190
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