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8
votes
2
answers
582
views
7 follow
2
answers
rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rrna sormerna intron bbsuite rna-seq written 7 months ago by Anand Rao • 300
0
votes
0
answers
149
views
0
answers
Noncoding annotations for WGS?
annotation noncoding intron written 6 months ago by syntax • 60
0
votes
3
answers
530
views
5 follow
3
answers
Intron and exon coordinates of all genes from Hg19
gene cordinates intron exon written 6 months ago by yliueagle • 220 • updated 6 months ago by vkkodali • 2.0k
1
vote
0
answers
188
views
0
answers
Defining exons, UTRs, introns and intergenic regions using "overlap" in Ensemble REST API
genomic coordinates exon ensemble rest api intron written 8 months ago by Maria • 10
1
vote
1
answer
4.0k
views
1
answer
How The Non-Canonical Intron Splice Sites Came Out?
intron written 6.5 years ago by bill-zt • 50 • updated 12 months ago by Biostar ♦♦ 20
1
vote
1
answer
305
views
1
answer
Variants in Exon or Intron
exon variant intron written 14 months ago by zakkaknadine • 10 • updated 14 months ago by shawn.w.foley • 1.2k
0
votes
1
answer
800
views
1
answer
How does an intron variant affect the overall gene expression?
gene intron snp written 15 months ago by vahid.atabaigi • 0 • updated 15 months ago by pltbiotech_tkarthi • 180
1
vote
1
answer
931
views
5 follow
1
answer
How to extract intronic regions from a Genbank file?
genome python intron extract written 18 months ago by Evergreen • 0 • updated 17 months ago by Alex Reynolds ♦ 30k
4
votes
2
answers
927
views
2
answers
Finding exons and introns sequences
genome ensembl sequence exon intron written 20 months ago by elisheva • 100 • updated 20 months ago by vkkodali • 2.0k
0
votes
1
answer
479
views
1
answer
Tools to construct gene model
domain intron gene model exon written 23 months ago by MAPK • 1.5k • updated 23 months ago by Kevin Blighe ♦ 61k
0
votes
0
answers
783
views
0
answers
gene predicted by GeneWise
genewise gene prediction intron written 2.4 years ago by xiachujing • 0
3
votes
2
answers
3.1k
views
5 follow
2
answers
Get Introns from a gft annotation file
intron rna-seq written 3.3 years ago by xd_d • 90 • updated 2.4 years ago by Saber HQ • 20
4
votes
1
answer
1.7k
views
1
answer
Bulk download introns, exons, and UTR regions from Ensembl for gene prediction training set
annotation sequence intron exon ensembl written 2.5 years ago by Katherine Huang • 0 • updated 2.5 years ago by Brian Gudenas • 90
3
votes
3
answers
5.1k
views
6 follow
3
answers
Any tools to quantify intron retention in RNAseq data?
rnaseq R intron retention rna-seq written 6.2 years ago by lkmklsmn • 930 • updated 2.5 years ago by lhdcsu • 30
2
votes
1
answer
1.9k
views
6 follow
1
answer
Intron size from gtf/gff file ?
annotation intron written 2.6 years ago by Picasa • 530 • updated 2.6 years ago by Hussain Ather • 940
1
vote
1
answer
990
views
1
answer
Intronic Variant Filtering
intron snp variantcalling written 3.0 years ago by cvu • 150 • updated 3.0 years ago by Samuel Brady • 310
0
votes
0
answers
956
views
0
answers
How to splice introne sequences for each transcript.
genome bedtools sequence intron fasta written 3.2 years ago by Tim Padvitski • 0 • updated 3.2 years ago by WouterDeCoster ♦ 44k
4
votes
1
answer
2.4k
views
1
answer
Trendline Of Chipseq Read Values In Intron Regions
R intron chipseq written 7.4 years ago by daniel.soronellas • 330 • updated 3.2 years ago by Biostar ♦♦ 20
1
vote
0
answers
906
views
0
answers
Get introns in bam format from alignment reads result
intron rna-seq written 3.3 years ago by xd_d • 90
0
votes
1
answer
762
views
1
answer
Help me with my GFFex results
gff intron intergenic written 3.9 years ago by elfkatzenbr • 0 • updated 3.4 years ago by Biostar ♦♦ 20
1
vote
0
answers
2.1k
views
0
answers
How to parse GFF3 file to get introns number and length from CDS coordinates?
gene gff3 intron python written 3.5 years ago by organizacja7 • 0
2
votes
3
answers
1.7k
views
3
answers
Enhancers in Introns
gene enhancer intron human written 3.8 years ago by kyeemon7 • 0 • updated 3.7 years ago by ajsn6c • 0
6
votes
2
answers
1.2k
views
2
answers
How to know intron lenghts
intron star rna-seq written 3.8 years ago by jmramos.bio • 10 • updated 3.8 years ago by i.sudbery ♦ 8.1k
3
votes
3
answers
1.6k
views
3
answers
Downloading all introns from Ensembl for Grch37
ensembl intron introns homo sapiens perl api written 4.0 years ago by mmacd • 20 • updated 4.0 years ago by igor ♦ 11k
7
votes
0
answers
1.4k
views
0
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findings start and stop position of a intron
gene snps position plink intron written 4.1 years ago by avari • 100
5
votes
1
answer
2.0k
views
1
answer
Trying to get a distribution of Exon lengths and Intron lengths.
gene ensembl sequence exon intron written 4.1 years ago by remi.b.md • 60
8
votes
3
answers
1.6k
views
3
answers
Detecting a small set of given Intron-Exon junctions in a RNA-Seq dataset
exon intron rna-seq junction written 4.2 years ago by Pierre Lindenbaum ♦ 129k • updated 4.2 years ago by Malachi Griffith ♦ 18k
2
votes
1
answer
2.1k
views
1
answer
Genome Music Evalutation Of Non-Coding / Intergenic Regions
genome intron music written 6.9 years ago by DoubleD • 130 • updated 4.2 years ago by Biostar ♦♦ 20
26
votes
2
answers
5.9k
views
2
answers
How To Download All The Introns From Ucsc
fasta assembly intron download ucsc written 8.5 years ago by Anima Mundi • 2.7k • updated 4.2 years ago by Biostar ♦♦ 20
1
vote
3
answers
2.3k
views
3
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mm9 genomic annotation UTR, Codon, Promoter
3'utr promoter 5'utr exons intron written 5.4 years ago by kanwarjag • 1.0k • updated 4.4 years ago by cooleel • 0
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