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1
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1
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133
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select longest isoform from RefSeq proteome fasta
fasta proteome refseq isoform written 11 days ago by wd • 0 • updated 11 days ago by SMK • 1.8k
0
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0
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80
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0
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Isoform level RNA-seq analyses
rna-seq isoform written 11 days ago by BPors • 40
0
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0
answers
108
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0
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inconsistent results of rsem quantification
rsem isoform rna-seq written 23 days ago by gnilihzeux • 0
1
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1
answer
135
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1
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STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq gene star isoform rsem written 5 weeks ago by jennygenome • 0 • updated 5 weeks ago by swbarnes2 ♦ 6.0k
2
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1
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1.9k
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1
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Fusion Isoform Quantification
fusion isoform written 5.3 years ago by Nicolas Rosewick ♦ 7.9k • updated 10 weeks ago by Biostar ♦♦ 20
1
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0
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306
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0
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Some problems with DEXSEQ analyse
dexseq expression rna-seq isoform written 4 months ago by darbinator • 190
2
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1
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400
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1
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How to distinguish if a gene is a paralogue or an isoform?
gene paralogue isoform written 5 months ago by DNAngel • 30 • updated 5 months ago by kashiff007 • 50
0
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0
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387
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0
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Identifying 5p and 3p in miRNA isoform expression data from TCGA for feature selection
data processing tcga microrna isoform mirna written 8 months ago by jiaqiwu • 0
3
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3
answers
534
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6 follow
3
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Relative transcript expression
transcript expression rna-seq isoform written 13 months ago by Govardhan Anande • 130 • updated 13 months ago by WouterDeCoster ♦ 40k
0
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0
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1.6k
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0
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Calculating Distance To Polya Site For Each Exon For Given Gene.Name
data isoform ucsc written 6.8 years ago by Puriney • 330 • updated 20 months ago by Biostar ♦♦ 20
1
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1
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775
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1
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Finding isoform in RNA-seq data
isoform es splice variant human rna-seq written 20 months ago by mari.felix5723 • 10 • updated 20 months ago by Devon Ryan ♦ 91k
1
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0
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1.1k
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0
answers
recognize known isoform from transcript mapping
alignment isoform pacbio written 4.3 years ago by ghbore • 0 • updated 22 months ago by Biostar ♦♦ 20
1
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0
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729
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0
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How to access up-to-date exon data from GTEx project
rnaseq exon gtex isoform tissue-specific written 23 months ago by vlrieg • 10
2
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0
answers
619
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0
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two different UCSC isoforms for the same transcript
ucsc rna-seq isoform tgca written 2.0 years ago by donegal77 • 0
6
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3
answers
3.4k
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7 follow
3
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Identifying Genes That Express Different Isoforms In Cancer Vs Normal Rna-Seq Data
splicing expression isoform written 7.0 years ago by Sahel • 250 • updated 2.1 years ago by kristoffer.vittingseerup • 2.0k
5
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4
answers
1.3k
views
4
answers
Differential isoform expression analyses
transcript expression rna-seq isoform written 2.8 years ago by rmf • 690 • updated 2.1 years ago by kristoffer.vittingseerup • 2.0k
1
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0
answers
967
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0
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What is the best tool for isoform function prediction?
prediction rna-seq isoform written 2.3 years ago by Fill • 70 • updated 2.2 years ago by Biostar ♦♦ 20
13
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2
answers
6.2k
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11 follow
2
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How to extract the longest isoform from multi fasta file
fasta perl extract isoform python written 5.0 years ago by jon.brate • 230 • updated 2.2 years ago by Biostar ♦♦ 20
2
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1
answer
1.0k
views
1
answer
Single-cell RNA-seq normalization with ERCC for isoform analysis
single-cell rna-seq normalization rna-seq isoform written 2.6 years ago by garyhokawai • 30 • updated 2.6 years ago by Mike • 1.3k
0
votes
0
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2.1k
views
0
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Error when running MISO
splicing miso rna-seq isoform written 3.5 years ago by onspotproductions • 140 • updated 2.9 years ago by joe • 0
0
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2
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838
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2
answers
New isoform discovery with paired end reads across different exons
paired end rna-seq isoform written 3.0 years ago by thomasterTW • 20 • updated 3.0 years ago by EagleEye ♦ 6.4k
0
votes
0
answers
704
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0
answers
MISO :: Filtered out "n" read pairs that were on same strand
splicing next-gen rna-seq isoform sequencing written 3.1 years ago by Govardhan Anande • 130
7
votes
1
answer
3.4k
views
1
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Hisat2 on multiple paired-end input
genome read rna-seq isoform sequencing written 3.2 years ago by dovah • 30 • updated 3.2 years ago by Devon Ryan ♦ 91k
1
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1
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2.4k
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1
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Identification of major isoform per gene from RNA-Seq
cufflinks major isoform rna-seq written 4.2 years ago by Leszek ♦ 4.0k
4
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0
answers
1.2k
views
0
answers
TERT isoform discrepancies UCSC vs Ensembl
gene ensembl uniprot isoform ucsc written 3.3 years ago by floris.barthel • 40 • updated 3.3 years ago by Emily_Ensembl ♦ 18k
2
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1
answer
1.2k
views
1
answer
PE or SE reads for alternative splicing / isoform quantification?
splicing cufflinks cuffdiff rna-seq isoform written 3.4 years ago by nevev • 90 • updated 3.4 years ago by Brian Bushnell ♦ 16k
2
votes
1
answer
874
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1
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ensemble illumina tissues aligned rnaSeq
gene bioinformatics alignment rna-seq isoform written 3.7 years ago by fk566938 • 10 • updated 3.7 years ago by mkulecka • 300
3
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3
answers
2.9k
views
3
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Finding isoform expression in RNA-Seq
tophat cufflinks rna-seq isoform written 4.5 years ago by Whoknows • 740 • updated 3.8 years ago by andrew.j.skelton73 ♦ 5.8k
9
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2
answers
1.6k
views
2
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differential expression at transcript level with paired samples
paired samples rna-seq isoform written 3.9 years ago by mjg • 20 • updated 3.9 years ago by Lior Pachter • 290
2
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1
answer
2.3k
views
1
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In TCGA RNA-seq exon specific data, why not all the exons of a particular isoform have similar read (RPKM)?
genome next-gen rna-seq isoform written 4.0 years ago by ruhulmb • 0 • updated 4.0 years ago by Devon Ryan ♦ 91k
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