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115
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How represent isoforms in different tracks in a genome browser?
reads alignment salmon rna-seq isoform written 4 weeks ago by Bardt9 • 0 • updated 13 days ago by Biostar ♦♦ 20
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72
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0
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DEXSeq for isoform data
dexseq rna-seq isoform written 14 days ago by inah • 0
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0
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100
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0
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HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
ballgown hisat2 stringtie isoform rna-seq written 24 days ago by ra711 • 0 • updated 24 days ago by genomax ♦ 91k
4
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1
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232
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1
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How to retain the row or line with longest protein isoform from csv table
linux command python csv protein isoform written 4 months ago by jamesdong • 0
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3
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241
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3
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How reliable are the ensembl transcript isoforms?
ensembl rna-seq isoform written 6 months ago by simplitia • 40 • updated 6 months ago by Astrid_Ensembl • 330
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0
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192
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Download all isoforms
sequence isoform written 7 months ago by sbdk • 60
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1
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996
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5 follow
1
answer
Some problems with DEXSEQ analyse
dexseq expression rna-seq isoform written 20 months ago by darbinator • 220 • updated 11 months ago by kristoffer.vittingseerup • 3.4k
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2
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675
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2
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select longest isoform from RefSeq proteome fasta
fasta proteome refseq isoform written 15 months ago by wd • 0 • updated 12 months ago by vkkodali • 2.1k
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390
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inconsistent results of rsem quantification
rsem isoform rna-seq written 16 months ago by gnilihzeux • 0 • updated 14 months ago by Biostar ♦♦ 20
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282
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Isoform level RNA-seq analyses
rna-seq isoform written 15 months ago by BPors • 40
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1
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1
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STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq gene star isoform rsem written 16 months ago by jennygenome • 0 • updated 16 months ago by swbarnes2 ♦ 8.9k
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1
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2.3k
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1
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Fusion Isoform Quantification
fusion isoform written 6.6 years ago by Nicolas Rosewick ♦ 9.2k • updated 18 months ago by Biostar ♦♦ 20
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1
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1.6k
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1
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How to distinguish if a gene is a paralogue or an isoform?
gene paralogue isoform written 20 months ago by DNAngel • 80 • updated 20 months ago by kashiff007 • 130
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816
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Identifying 5p and 3p in miRNA isoform expression data from TCGA for feature selection
data processing tcga microrna isoform mirna written 2.0 years ago by jiaqiwu • 10
3
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3
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835
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6 follow
3
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Relative transcript expression
transcript expression rna-seq isoform written 2.4 years ago by Govardhan Anande • 130 • updated 2.4 years ago by WouterDeCoster ♦ 44k
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0
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1.9k
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0
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Calculating Distance To Polya Site For Each Exon For Given Gene.Name
data isoform ucsc written 8.0 years ago by Puriney • 330 • updated 3.0 years ago by Biostar ♦♦ 20
1
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1
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1.1k
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1
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Finding isoform in RNA-seq data
isoform es splice variant human rna-seq written 3.0 years ago by mari.felix5723 • 10 • updated 3.0 years ago by Devon Ryan ♦ 97k
1
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1.4k
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recognize known isoform from transcript mapping
alignment isoform pacbio written 5.6 years ago by ghbore • 0 • updated 3.2 years ago by Biostar ♦♦ 20
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1.0k
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0
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How to access up-to-date exon data from GTEx project
rnaseq exon gtex isoform tissue-specific written 3.2 years ago by vlrieg • 10
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0
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788
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0
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two different UCSC isoforms for the same transcript
ucsc rna-seq isoform tgca written 3.3 years ago by donegal77 • 0
6
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3
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3.9k
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7 follow
3
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Identifying Genes That Express Different Isoforms In Cancer Vs Normal Rna-Seq Data
splicing expression isoform written 8.2 years ago by Sahel • 260 • updated 3.4 years ago by kristoffer.vittingseerup • 3.4k
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4
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1.8k
views
4
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Differential isoform expression analyses
transcript expression rna-seq isoform written 4.1 years ago by rmf • 970 • updated 3.4 years ago by kristoffer.vittingseerup • 3.4k
1
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0
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1.4k
views
0
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What is the best tool for isoform function prediction?
prediction rna-seq isoform written 3.6 years ago by Fill • 70 • updated 3.4 years ago by Biostar ♦♦ 20
16
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2
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8.0k
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13 follow
2
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How to extract the longest isoform from multi fasta file
fasta perl extract isoform python written 6.3 years ago by jon.brate • 250 • updated 3.5 years ago by Biostar ♦♦ 20
2
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1
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1.4k
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1
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Single-cell RNA-seq normalization with ERCC for isoform analysis
single-cell rna-seq normalization rna-seq isoform written 3.9 years ago by garyhokawai • 30 • updated 3.9 years ago by Mike • 1.6k
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0
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2.5k
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0
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Error when running MISO
splicing miso rna-seq isoform written 4.7 years ago by onspotproductions • 140 • updated 4.2 years ago by joe • 0
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2
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1.1k
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2
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New isoform discovery with paired end reads across different exons
paired end rna-seq isoform written 4.3 years ago by thomasterTW • 20 • updated 4.3 years ago by EagleEye ♦ 6.7k
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917
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0
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MISO :: Filtered out "n" read pairs that were on same strand
splicing next-gen rna-seq isoform sequencing written 4.4 years ago by Govardhan Anande • 130
7
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1
answer
4.3k
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1
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Hisat2 on multiple paired-end input
genome read rna-seq isoform sequencing written 4.5 years ago by dovah • 30 • updated 4.5 years ago by Devon Ryan ♦ 97k
1
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1
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2.8k
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1
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Identification of major isoform per gene from RNA-Seq
cufflinks major isoform rna-seq written 5.5 years ago by Leszek ♦ 4.1k
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