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Does bedtools intersect output overlaps with isoforms?
bedtools isoforms written 20 hours ago by kmkdesilva • 90
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146
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How to find out the domains encoded by each exon and predict gene isoform role/function?
genome splicing genes isoforms rna-seq written 6 weeks ago by danson.wooi • 0 • updated 6 weeks ago by caggtaagtat • 1.3k
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184
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How to handle "-1" PSI value in splicing
psi isoforms rna-seq alternative splicing written 7 months ago by NJE • 0
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235
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Isoforms of an enzyme
gene ecnumber isoforms written 12 months ago by Natasha • 40 • updated 12 months ago by genomax ♦ 89k
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393
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How to deal with clone genes?
gene expresion isoforms rna-seq written 14 months ago by BPors • 40 • updated 14 months ago by h.mon ♦ 31k
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427
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How can I filter my RNA-seq transcript data to display ONLY novel isoforms and variants?
fusion isoforms rna-seq splice-variant written 17 months ago by wolfgang.rumpf • 10 • updated 16 months ago by geek_y ♦ 11k
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392
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Where is the (hg19) reference data for transcript isoforms' relative abundances for each gene?
transcriptomics isoforms rna-seq written 17 months ago by Joel Wallenius • 70 • updated 17 months ago by i.sudbery ♦ 9.2k
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Is there a good way to get the proportions of isoforms *within* a condition using output from kallisto
isoforms kallisto rna-seq written 20 months ago by brett.vanderwerff • 20
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Should cndas provided by Ensembl be filtered by ccds or biotype prior to running kallisto?
isoforms kallisto written 23 months ago by holgerbrandl • 30
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Run ProtAnnot Plug-In on UCSC-isoforms in IGB (interactive genome viewer)
protannot isoforms igb ucsc written 2.3 years ago by K91 • 10 • updated 2.2 years ago by Mason Meyer • 110
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LncRNA isoforms RNA-seq
lncrnas isoforms rna-seq lncrna written 2.3 years ago by Martin B. • 10
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637
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Protein isoforms and paralog sequences
isoforms sequence homology enzyme written 2.3 years ago by Maverick • 20
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497
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differential expression pattern of different isoforms of a gene
expression isoforms rna-seq written 2.4 years ago by genesneuro • 10
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772
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Count reads from isoforms in RNA-seq data
next-gen isoforms rna-seq splice variants written 2.4 years ago by nicanicagm • 0 • updated 2.4 years ago by h.mon ♦ 31k
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686
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Retrieving BAM files from known isoforms
bam isoforms written 3.0 years ago by priscillamorris90 • 0 • updated 3.0 years ago by Pierre Lindenbaum ♦ 130k
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PASA pipeline: just compare to the reference annotation
trinity pasa isoforms rna-seq transcripts written 3.2 years ago by dovah • 30
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Interpret Cufflinks output to detect novel isoforms
novel cufflinks isoforms rna-seq cuffdiff written 5.3 years ago by Ana • 20 • updated 3.4 years ago by jila-hessani • 0
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determining isoform usage with Jensen-Shannon metric and eXpress output
express cufflinks isoforms rna-seq written 6.3 years ago by sah9b • 100 • updated 3.5 years ago by Lalla • 40
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1.2k
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Generate more splice variant from RNA-seq data
stringtie isoforms rna-seq alternative splicing written 3.7 years ago by nim.1111.ou • 160
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Why does stringtie --merge remove potential novel transcript isoforms if they are substrings of longer isoforms?
isoforms rna-seq written 4.1 years ago by vegard nygaard • 200 • updated 4.0 years ago by dgrover6 • 10
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lncRNA gene vs. lncRNA isoform
lncrna isoforms transcripts gencode rna-seq written 4.1 years ago by tunl • 60 • updated 4.1 years ago by Satyajeet Khare • 1.6k
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What is the importance of different isoforms with same CDS regions and same proteins? Why in nature it is needed?
gene isoforms written 4.2 years ago by afashmalik • 0
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How to find up and downregulated isofoms using cuffdiff outputs
alignment isoforms rna-seq written 4.5 years ago by jaimie.richards91 • 0
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Job: PostDoc Fellow in Genomics and Transcriptomics of Mental Disorders, New York City (Manhattan, NYC)
eqtl non-coding rna isoforms networks job rna-seq written 4.7 years ago by dalila.pinto • 0
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What can I do with RNA-seq RPKM exon level data ?
rpkm isoforms exons rna-seq written 5.0 years ago by avari • 100 • updated 5.0 years ago by Istvan Albert ♦♦ 84k
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Sequences of isoforms of a gene from RNAseq data
novel transcripts isoforms rna-seq written 5.2 years ago by mfahim • 10
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cummeRbund ISSUE or BRICKWALL
fpkm isoforms scvplot written 5.4 years ago by mfahim • 10
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PFAM domains for all protein Isoforms from same protein
domain protein isoforms uniprot pfam written 5.8 years ago by Michi • 970 • updated 5.8 years ago by cdsouthan • 1.8k
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Recommended Tools For Isoform Expresion From ExonArrays
exon-arrays isoforms R written 6.0 years ago by Ice P • 0 • updated 6.0 years ago by dario.garvan • 470
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How to deal with the FPKM values for isoforms in RNA-seq for particular gene
fpkm isoforms rna-seq written 6.2 years ago by ancient_learner • 630 • updated 6.2 years ago by Sukhdeep Singh ♦ 10k
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