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Recent Replies
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A: Extracting important gene with similar expression level from multiple samples by
piyushjo • 150
You can try WGCNA. It will help you select non-linearly correlated genes. I am just concerned wit...
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A: Extracting important gene with similar expression level from multiple samples by
The • 160
How about selecting genes with least variance across samples? Otherwise some clustering will giv...
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C: chop Nanopore (long) reads by
JC ♦ 8.2k
The question is fine, my response will be: "Yes"
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JC ♦ 8.2k
As pointed above, the error could be a sample preparation, errors in base calling, reagents probl...
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jrj.healey ♦ 13k
NCBI will house such data, but you will need to search for appropriate bio projects/cell lines et...
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C: Issue With CRAM -> BAM -> FASTQ Conversion by
denis.k • 10
Thank you! It was a lib curl problem! Turns out that I just needed the --enable lib curl option. ...
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C: Highly biased experiment showing funny histogram of p values for all tests. Sugg by
Fabio Marroni • 2.3k
I cannot see the figures, is it me or something went wrong?
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C: PowerMarker for association analyses Input file not working for quantitative tra by
Fabio Marroni • 2.3k
1) Why do you need to use PowerMarker? It is very old and not maintained since several years. The...
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C: How is distal enhancer defined? by
p4alindromic • 10
I think in the second paper, proximal means promoter and distal means enhancer. I am more interes...
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C: GenBank accesion number to gene id by
trumbia • 10
Yes I know this page but the annotation is different. I wanted to convert it.
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C: GenBank accesion number to gene id by
piyushjo • 150
Yes, sorry. It looks like while ensembl has a page your organism it doesn't show up in the biomar...
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C: Methods for Doing Consensus Variant Calling between multiple callers by
ATpoint ♦ 21k
This work might give some insipration: https://www.ncbi.nlm.nih.gov/pubmed/29945233
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