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Job: Ensembl Plants Senior Bioinformatician
ebi embl genomics ensembl
1 day ago by Ben_Ensembl ★ 2.4k
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Job: Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes DevOps executor AWS Snakemake
updated 6 days ago by 54k • written 7 days ago by ▴ 100
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Job: Ensembl Outreach Project Leader
ebi embl genomics ensembl
1 day ago by Ben_Ensembl ★ 2.4k
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181
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Job: Bioinformatics PhD position in Aarhus, Denmark
PhD Genomics Cancer
updated 12 days ago by 43k • written 14 days ago by • 0
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255
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Job: PhD in bioinformatics / computational biology
NGS Omics Evolution Aging
15 days ago by Arne.Sahm • 0
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Job: Full Stack Web Developer - Cambridge, UK
JavaScript Python Visualisation
written 8.4 years ago by ▴ 400
2
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1
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596
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Job: Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
18 days ago by Shicheng Guo ★ 9.4k
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Job: Job Opening - Fred Hutch - Director of Training & Community
fred-hutchinson
updated 28 days ago by 43k • written 29 days ago by ▴ 20
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213
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Job: Post-doctoral positions in computational biomedicine
data-science biomedicine machine-learning
updated 29 days ago by 43k • written 29 days ago by ▴ 200
0
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244
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Job: Bioinformatics/Data Science postdoc position in Aarhus, Denmark
data-science genomics postdoc
updated 18 days ago by 43k • written 5 weeks ago by • 0
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2.0k
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Job: Bioinformatics Research Postdoc
RNA-Seq genome
updated 12 days ago by 43k • written 8.2 years ago by • 0
11 results • Page 1 of 1
Recent Votes
Read pair orientation : Illumina TruSeq Stranded mRNA library
Answer: Gene set enrichment analysis differences between 2020 and 2024
Answer: Gene set enrichment analysis differences between 2020 and 2024
Interested in Spatial Omics?
Answer: Seurat merge and batch correction
Answer: Seurat merge and batch correction
Comment: Per base sequence content error in RNAseq analysis
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Recent Replies
Comment: How to calculate identity percentage between proteins contained in a FASTA file? by b.contreras.moreira ▴ 170
This should work if you know your sequences are related, otherwise is safer to compute local alignments with BLAST
Comment: How to compare the quality of assemblies by kirillkirilenko ▴ 40
A haploid assembly is our goal. For purging we used prefix.p_ctg.gfa (assembly graph of primary contigs).
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File? by Istvan Albert 100k
What I mean is that no sequencing run can be calibrated with the claimed precision. Where it could correctly distinguish between basecalls …
Comment: HaplotypeCaller - only SNPs by analyst ▴ 20
After HaplotypeCaller, you can use gatk SelectVariants to extract snps or indels from vcf file ([link to command][1]) [1]: https://gatk…
Comment: GTF file for Rhinolophus sinicus by atowns21 • 0
Ah gotcha. I guess what doesn't make sense to me is why a [paper][1] published in 2022 uses that reference genome. [1]: https://www.na…
Answer: Wilcox test using data slot (log normalized count values) of scRNA-seq between t by yxwucq • 0
The best way is to generate a pseudo-bulk aggregation then apply edgeR or DESeq2. You can also directly use wilcoxon on sc-level, since man…
Comment: How to solve this RoseTTAFold colaboratory error? by Mensur Dlakic ★ 27k
There is a dedicated Discord group that deals with everything related to ColabFold and its derivatives. Below is an invitation to join that…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
Hmm, okay I'm not sure what is going on, but here is what I did: 1. Downloaded a single fastq: `parallel-fastq-dump --tmpdir . --threads …
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks? by HyperEvo • 0
Ok, thank you so much~
Comment: GTF file for Rhinolophus sinicus by GenoMax 141k
I was able to get the GTF file. I tried the fasta genome and it seemed to work but I did not complete the download. If you choose to ignore…
Comment: some error in building kraken2 database by Art1ess • 0
I have 2 files output, no error logs... the .kreport file: 100.00 160136511 160136511 U 0 unclassified head .res…
Comment: TCGA2STAT Error: Firehose connection by LauferVA 4.2k
agree. from a data-centric (rather than software centric) standpoint, it shouldn't be hard to get the TCGA data you are looking for from o…
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
yep. in this case id definitely start with the grant numbers themselves as others have indicated. i did not recommend this before due to un…
Comment: GTF file for Rhinolophus sinicus by atowns21 • 0
This download doesn't seem to work for me. There is a message on the website saying "Warning: contaminated. Status: RefSeq GCF_001888835.1 …
Answer: HaplotypeCaller - only SNPs by Pierre Lindenbaum 161k
Filter the vcf dowstream after haplotypecaller using bcftools or gatk variantfiltration
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