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13 results • Page
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Job:
Junior Research Software Engineer/ Research Software Engineer - web resources for virology
software
developer
web
virology
8 days ago by
Joseph Hughes
★ 3.0k
0
votes
0
replies
114
views
Job:
Bioanalysis Neuroimaging position
python
machine-learning
Neuroscience
updated 14 days ago by
Ram
43k • written 14 days ago by
sivan.kinreich
• 0
0
votes
0
replies
256
views
Job:
Postdoctoral Fellow / Staff Scientist - Genomic Data Modeling Lab
genomics
machine-learning
Seattle
updated 29 days ago by
Ram
43k • written 4 weeks ago by
pejman.m
• 0
0
votes
0
replies
286
views
Job:
Data scientist/Bioinformatician University of Wisconsin Biotechnology Center Bioinformatics Resource Center
data-scientist
updated 14 days ago by
Ram
43k • written 21 days ago by
jv
★ 1.7k
0
votes
0
replies
221
views
Job:
PhD offer metabarcoding plant insect interaction in agricultural fields in Germany
Metabarcoding
enthomology
botany
26 days ago by
b.gemeinholzer
• 0
0
votes
0
replies
181
views
Job:
Bioinformatics Assistant Researcher - Metabarcoding - Honolulu, Hawaii
DNA
postdoc
eDNA
environmental
metabarcoding
14 days ago by
Jonathan
• 0
0
votes
0
replies
151
views
Job:
Project Scientist in Neurobiology at UC San Diego
UCSD
Biology
LifeScience
HigherEducation
14 days ago by
lta
▴ 10
0
votes
0
replies
125
views
Job:
Post-doctoral positions in computational biomedicine
data-science
biomedicine
machine-learning
updated 2 days ago by
Ram
43k • written 2 days ago by
pandey.gaurav
▴ 200
1
vote
0
replies
95
views
Job:
Job Opening - Fred Hutch - Director of Training & Community
fred-hutchinson
updated 1 day ago by
Ram
43k • written 2 days ago by
Fred Hutch (Recruiting)
▴ 20
0
votes
0
replies
169
views
Job:
Bioinformatics/Data Science postdoc position in Aarhus, Denmark
postdoc
data-science
genomics
bioinformatics
14 days ago by
besen
• 0
0
votes
0
replies
369
views
Job:
Assistant professor in Computational biology with a focus on machine learning for multimodal molecular biology data
Multiomics
Machine-Learning
22 days ago by
lukas.kall
▴ 40
0
votes
0
replies
240
views
Job:
Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
28 days ago by
Shicheng Guo
★ 9.4k
0
votes
0
replies
142
views
Job:
Postdoctoral research position at the Barts Cancer Institute - Queen Mary University London
cancer
epigenomics
transposable-elements
updated 22 days ago by
Ram
43k • written 22 days ago by
Sergio Martínez Cuesta
▴ 230
13 results • Page
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Recent Votes
Comment: Issue with making local BLAST database
Comment: struggle to get fasta files from ucsc goldenPath
Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
Quantile normalizing prior to or after TPM scaling?
Structural variant filtering
Trouble with bedtools getfasta
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
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Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
Of course ... But as 'expected' the range `range=chr8:127794533-128101253` in the output sequence file belongs to: LF385466, LF385467, MA62…
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
Can you select the output format as sequence instead of BED?
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
Could you please elaborate how to retrieve the sequences directly from the table browser? Thanks!
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
If coordinates in your BED file refer to chromosomal locations then you need to use the whole genome file and get those sections by the met…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
by
Istvan Albert
100k
maybe it would work better to ask the OP to post their question as a new one and delete this answer after, if you delete the post they ca…
Comment: Issue with making local BLAST database
by
GenoMax
140k
By default only 20 entries are returned if you don't set the `retmax` parameter. You will not want to do this via R since you will be limit…
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
So this is my approach: I want to interrogate gene PVT1, I know the coordinates for it is chr8:127794532-128101252 In UCSC table I selected…
Comment: Flow Cytometry Data Analysis by Seurat
by
ATpoint
81k
> I think Seurat is suitable for our purpose (e.g. conducting dimensional reduction of the data such as tSNE), but does it make sense? No…
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
mRNA file is not going to have the same co-ordinates as the main chromosomes. Can you clarify what coordinates are in your BED file?
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
It is because I want to pull the mRNA fasta files and not DNA (which I guess is the case if I pull it from the entire genome)
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
If your intervals are for main chromosomes why are you using the mRNA file instead of the entire genome? If you have the gene ID's you coul…
Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
by
Pierre Lindenbaum
160k
I downsampled the bams and it works now...
Answer: ONT direct RNA sequencing
by
dthorbur
★ 1.7k
You can check the validity of gzipped files using `gzip -v -t file.gz`. Should look something like this: ``` $ gzip -v -t test_file.…
Comment: Nanopore data filtering using fastp
by
emilydolivo97
• 0
I tested seqtk sample but I generate a wird result. Can I share my code and results with you please ?
Comment: Nextflow ERROR : Timeout waiting for connection from pool
by
GenoMax
140k
As best as I can tell it is a combination of things. Did you try setting `export NXF_ENABLE_VIRTUAL_THREADS="true"` in your shell? You also…
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