15 days ago by
alwayshope
▴
30
1
vote
2
replies
326
views
1
vote
2
replies
719
views
updated 1 day ago by
Ram
40k
•
written 13 months ago by
Shicheng Guo
★
9.3k
0
votes
2
replies
317
views
0
votes
1
reply
477
views
1
vote
1
reply
529
views
updated 19 days ago by
colindaven
5.5k
•
written 5 weeks ago by
cdrinfo
•
0
0
votes
0
replies
223
views
0
votes
0
replies
479
views
0
votes
0
replies
585
views
0
votes
0
replies
412
views
28 days ago by
Gordon Smyth
★
6.4k
0
votes
0
replies
200
views
0
votes
0
replies
515
views
updated 11 days ago by
Ram
40k
•
written 11 days ago by
alwayshope
▴
30
0
votes
0
replies
251
views
updated 18 days ago by
Ram
40k
•
written 20 days ago by
haley.agnor
▴
10
0
votes
0
replies
751
views
0
votes
0
replies
164
views
updated 20 days ago by
Ram
40k
•
written 21 days ago by
facultyrecruiting.ista
•
0
2
votes
0
replies
129
views
1 day ago by
Ben_Ensembl
★
2.3k
1
vote
0
replies
270
views
Recent Votes
Recent Locations •
All
Galway, Ireland, just now
Turkey, 1 minute ago
France, 1 minute ago
United States, 7 minutes ago
Lugano, 7 minutes ago
United Kingdom, 8 minutes ago
United States, 8 minutes ago
Recent Awards •
All
Popular Question to
bharata1803
▴
550
Scholar to
Mensur Dlakic
★
25k
Popular Question to
morovatunc
▴
550
Popular Question to
fi1d18
★
4.2k
Recent Replies
Comment: How to determine the total count for each gene in lymphotype B
by
dalibenam64
•
0
thank you very much for your response I'm really grateful !!
but I'm still confused because for example for patients I have 2 replicates…
Comment: Sequence quality drops in the 3' end of the left sequence in paired end. What co
by
eggrandio
▴
40
But shouldn't quality drop at both 3'ends and not just on the left one?
Answer: Sequence quality drops in the 3' end of the left sequence in paired end. What co
by
ATpoint
77k
That's normal and known: https://www.biostars.org/p/91624/
Comment: to annotate BEDPE files
by
Lhl
▴
760
is this what you are looking for?
https://github.com/imgag/ngs-bits/blob/master/doc/tools/BedpeGeneAnnotation.md
Comment: ncbi error report log for validate fastq issue
by
1769mkc
★
1.1k
" you're forced to use it" this is sort of since I have use docker image and then pass the GSM id as list of input first to check if the th…
Comment: ncbi error report log for validate fastq issue
by
ATpoint
77k
I don't think this log is helpful. Can't you just get fastq download links via sra-explorer.info or the tool mentioned by @rob in his answe…
Comment: How the first sequencing template removed in pair end sequencing
by
rfran010
▴
810
Great! It looks like USER enzyme is used to cleave before the first read sequencing and formamidopyrimidine DNA N-glycosylase is used to cl…
Comment: module and trait correlation for WGCNA
by
andres.firrincieli
3.4k
Hi,
First of all, you should never use DEGs for WGCNA. See @kevinblighe answer: [link][1].
> However, when it comes to module-trait analy…
Comment: identify DEGs across all conditions and per specific conditions
by
luffy
▴
50
@camillab, Please look into Kevin Blighe's response in this [post][1] hope that helps.
[1]: https://www.biostars.org/p/357464/
Answer: Running Rockhopper from a command-line
by
langziv
▴
50
I managed to resolve the issue by passing absolute paths instead of relative ones.
Comment: Which function is best for pathway analysis?
by
luffy
▴
50
@chris Please look into @Hamid Ghaedi's well documented [post][1] on ORA and GSEA, Or [this][2] documentation. Hope this helps.
[1]: ht…
Comment: Bacterial Pangenome Analysis
by
kirankumareripogu
▴
10
Hi @liorglic,
Thank you for your prompt response.
I totally agree with you that different blastp cuttoffs provide different results and…
Answer: Fetch Fastq files directly for SRA data
by
Rob
6.2k
What is the accession for the project? Many — though not all — of the projects present in the NCBI SRA are also hosted in the European Nuc…
Comment: Dataset's name in BioMart for S. pombe
by
YUYANG.OON
•
0
Works with `useMart(biomart="fungi_mart", dataset="spombe_eg_gene", host="https://fungi.ensembl.org")`
Traffic: 1972 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6