0
votes
0
replies
210
views
Recent Votes
Recent Locations •
All
Geneva, 2 minutes ago
Tel Aviv, 3 minutes ago
India, 4 minutes ago
France, 5 minutes ago
Galway, Ireland, 6 minutes ago
Denmark, 7 minutes ago
Russia, 8 minutes ago
Recent Awards •
All
Popular Question to
zx8754
11k
Popular Question to
xiaoguang
▴
120
Popular Question to
luffy
▴
30
Popular Question to
blz
▴
10
Popular Question to
Ram
40k
Popular Question to
mohammadhassanj
▴
260
Recent Replies
Answer: Identifying common DEGs among multiple datasets
by
Barry Digby
★
1.2k
Return a vector of common DEGs
```R
dataset1 <- read.csv("dataset1.csv", header=T)
dataset2 <- read.csv("dataset2.csv", header=T)
h…
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
by
langziv
▴
50
If it's difficult to tell from RNA-seq data, what other approaches I should use?
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
by
langziv
▴
50
I modified the question so that instead of genes the question refers to CDSs.
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
by
langziv
▴
50
Thanks.
Is there an approach or a guideline to filter such sequences?
Answer: Assistance with Fungal Genome Annotation Using Maker and BLAST
by
Juke34
8.2k
There are tools to combine output from blast in tabulated format like in the example here [enter link description here][1](see functional …
Answer: Importance of Data Structures for Bioinformatics?
by
xiaoguang
▴
120
Bioinformatics is a cross-disciplinary research subject and learning anything is a plus for future participation in related jobs. But right…
Answer: How to find positions with higher depth relative to their surroundings
by
xiaoguang
▴
120
I saw you want to get regions that have significantly higher depth than their surroundings; you must get a p-value to show significant as w…
Comment: how to calculate BAF and LRR from VCF or BCF files?
by
xiaoguang
▴
120
Hi, The ASCAT new version has introduced a new function called `ascat.prepareHTS`, which can be used to prepare all files that are required…
Comment: GERP++ (gerpcol) error on a test data
by
Diana
•
0
I solved the problem in the end. I was under the impression that the reference sequence had to be provided in a separate fasta file:
c…
Answer: How to find positions with higher depth relative to their surroundings
by
d-cameron
★
2.9k
The usual way of doing this is to use one of the many existing copy number variant caller. Doing this yourself is both a) complicated to do…
Answer: How to retrieve LoF and missense variants in WES data?
by
luffy
▴
30
@ _quantum_girl_, as Pierre mentioned, you can annotate your VCF with [snpEff][1] or [ensembl vep][2] once you annotated you could filter n…
Comment: Adding a control sample to bulk RNA-seq
by
Chris
▴
180
Thank you so much! It is from the same lab but from another project. Would you please explain about combining the counts together a little …
Answer: Importance of Data Structures for Bioinformatics?
by
d-cameron
★
2.9k
> how important are Data Structures to multi-omic / bioinformatic analysis
Generally speaking, they're not critical if you are using an …
Answer: Recommended order of operations for identifying the genomic location and copy-nu
by
dk0319
▴
70
Update: The above workflow was successful, in that contig_1719 does contain approximately 4 copies of my insert based on searching pieces o…
Comment: manhattan plot with vcf information
by
sooni
▴
10
I want to find out specific genes using the manhattan plot. I divide the patients into two groups, controls and patients, and try to identi…
Traffic: 2592 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6