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Job: UCSC Genome Browser job opportunity!
browser
updated 1 day ago by 39k • written 3.6 years ago by ▴ 30
1
vote
2
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1.3k
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Job: Postdocs @ New York City: Long Reads based Epigenomics, Metagenomics and Transcriptomics
microbiome genome RNA-Seq sequencing
updated 1 day ago by 39k • written 3.6 years ago by ▴ 120
1
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0
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1.0k
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Job: PhD position in Statistical Genetics
SNP R genome
updated 22 hours ago by 39k • written 3.6 years ago by ▴ 10
0
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0
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1.2k
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Job: Postdoc position in machine learning and variation interpretation
postdoc machine-learning
updated 22 hours ago by 39k • written 3.6 years ago by ▴ 10
0
votes
0
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662
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Job: Postdoctoral Fellow in High-throughput Imaging
Scikit Omero Imagej IDR
updated 22 hours ago by 39k • written 3.6 years ago by ▴ 230
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0
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899
views
Job: multiple positions open at Nevada Institute of Personalized Medicine.
postdoc assistant-professor
updated 1 day ago by 39k • written 3.6 years ago by ▴ 10
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0
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1.5k
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Job: Bioinformatics Analyst - Stoke Therapeutics, Inc, Bedford MA, USA
aws web-application ngs
updated 1 day ago by 39k • written 3.6 years ago by ★ 2.1k
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0
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2.3k
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Job: Bioinformatics Programmer - Washington University in St. Louis
developer analyst cancer-genomics
updated 6 days ago by 39k • written 3.9 years ago by 22k
0
votes
0
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1.2k
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Job: Developing Next Generation Programmable Antibiotics
antibiotics RNA-Seq pathogen genomics
updated 1 day ago by 39k • written 3.6 years ago by • 0
0
votes
4
replies
1.3k
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Job: PhD position in translational clinical implementation of metagenomics
minion bench_to_bedside ngs
updated 5 days ago by 39k • written 3.9 years ago by 4.9k
1
vote
0
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1.1k
views
Job: Bioinformatics Post-doctoral position at Gulbenkian Institute Portugal
assembly R SNP genome rna-seq
updated 1 day ago by 39k • written 3.6 years ago by 2.8k
2
votes
0
replies
869
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
proteomics
updated 1 day ago by 39k • written 3.6 years ago by ★ 6.1k
0
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0
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1.2k
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Job: Postdoctoral Position / Computational Scientist position - UT Southwestern, Dallas, TX, USA
computational genome
updated 1 day ago by 39k • written 3.6 years ago by • 0
0
votes
0
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1.1k
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Job: Postdoc in Computational Biology at Novo Nordisk Foundation Center for Biosustainability (DTU Biosustain)
Computational-Biology Postdoc DTU
updated 1 day ago by 39k • written 3.6 years ago by ▴ 70
0
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0
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1.0k
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Job: Senior Bioinformaticians x 4- Tree of Life
flexible-working Python sequencing-data
updated 1 day ago by 39k • written 3.6 years ago by ▴ 230
0
votes
2
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1.2k
views
Job: Computational Biologist / Bioinformatician Required - Cambridge
pipelines ngs next-gen r
updated 1 day ago by 39k • written 3.6 years ago by • 0
0
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0
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1.2k
views
Job: Computational Genomics postdoc at NCBI, NIH. Bethesda, MD, USA.
deep-learning genomics
updated 1 day ago by 39k • written 3.6 years ago by ▴ 140
0
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0
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1.4k
views
Job: American Museum of Natural History Postdoctoral Fellowships in Bioinformatics and Computational Biology
human-health biomedicine
updated 1 day ago by 39k • written 3.6 years ago by ▴ 20
0
votes
0
replies
975
views
Job: Ensembl Bioinformatics Developer
model-organisms ensembl genomics
updated 1 day ago by 39k • written 3.6 years ago by 23k
0
votes
0
replies
564
views
Job: Bioinformatics Developer, Plant & Fungal Trees of Life Project (PAFTOL), Royal Botanic Gardens Kew
Botany software
updated 1 day ago by 39k • written 3.6 years ago by • 0
2
votes
0
replies
1.1k
views
Job: Ensembl Genomics Project Leader
gene-annotation model-organism ensembl
updated 1 day ago by 39k • written 3.6 years ago by 23k
0
votes
0
replies
994
views
Job: Post-doc: Structural Bioinformatics (Genoscope, Evry, France)
post-doc structural-bioinformatics
updated 1 day ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
895
views
Job: Postdoctoral Position in Computational Neuroscience
computational-neuroscience Harvard biomedicine
updated 1 day ago by 39k • written 3.6 years ago by • 0
1
vote
0
replies
1.0k
views
Job: Senior Bioinformatician, University of Chicago
omics next-gen software
updated 1 day ago by 39k • written 3.6 years ago by ▴ 310
1
vote
0
replies
842
views
Job: Computational biologist / Bioinformatician I & II at University of Texas Southwestern Medical Center at Dallas
ChIP-Seq R SNP sequencing RNA-Seq
updated 1 day ago by 39k • written 3.6 years ago by ▴ 20
0
votes
0
replies
1.6k
views
Job: Postdoc - Bioinformatics/Computational biology at The University of Alabama at Birmingham
data-scientist omics postdoc programming genomics
updated 1 day ago by 39k • written 3.6 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Job: Researcher / Software Developer position
Software-development Researcher
updated 1 day ago by 39k • written 3.6 years ago by ▴ 890
0
votes
0
replies
813
views
Job: Ensembl Web Back-end Project Leader
database web infrastructure ensembl
updated 1 day ago by 39k • written 3.6 years ago by 23k
0
votes
0
replies
1.1k
views
Job: Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
bioconductor biostatistics
updated 1 day ago by 39k • written 3.6 years ago by ▴ 10
0
votes
0
replies
973
views
Job: PhD candidate position in Computational Biology and Gene Regulation
Genomics Gene-regulation DNA-methylation
updated 1 day ago by 39k • written 3.6 years ago by ▴ 890
1
vote
3
replies
943
views
Job: DADA2/R Programmer Needed for One-Time Job
R microbiome dada2
updated 1 day ago by 39k • written 3.6 years ago by ▴ 60
0
votes
0
replies
843
views
Job: Postdoc in Bioinformatics at the Department of Molecular Medicine (MOMA), Aarhus University
postdoc aarhus moma denmark
updated 1 day ago by 39k • written 3.6 years ago by ★ 2.9k
3
votes
0
replies
968
views
Job: Three PI positions in neurogenomics or neuroscience at VIB-UAntwerp (Belgium)
VIB neuroscience genomics
updated 1 day ago by 39k • written 3.7 years ago by 47k
0
votes
0
replies
899
views
Job: Postdoctoral opportunity in Computational Epigenomics at NIH, Baltimore
next-gen-sequencing RNA-seq ATAC-seq
updated 1 day ago by 39k • written 3.6 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Job: Bioinformatician: NEW YORK CITY - Institute for Data Science and Genomic Technology, Mount Sinai School of Medicine
microbiome bioinformatician systems-biology
updated 1 day ago by 39k • written 3.6 years ago by ▴ 30
1
vote
0
replies
1.4k
views
Job: Scientist - Genomics & Proteomics at the Chan Zuckerberg Biohub (San Francisco, CA)
proteomics genomics software sequencing
updated 1 day ago by 39k • written 3.6 years ago by ▴ 10
2
votes
0
replies
1.4k
views
Job: Senior Scientist (Curator) - CIViC Editor at McDonnell Genome Institute (Washington University, St Louis USA)
civic biocuration cancer genomics
updated 1 day ago by 39k • written 3.7 years ago by 20k
0
votes
0
replies
1.3k
views
Job: Research Scientist Bioinformatics working on scRNA-Seq at Evotec SE (Goettingen, DE)
scRNA-Seq RNA-Seq R
updated 1 day ago by 39k • written 3.7 years ago by ★ 1.4k
2
votes
0
replies
1.1k
views
Job: Ensembl genebuild bioinformatician
gene-annotation ensembl genomics
updated 1 day ago by 39k • written 3.7 years ago by 23k
0
votes
0
replies
1.1k
views
Job: Two postdoctoral researchers to study microRNA functions in single cells
proteomics postdoc RNA-Seq single-cell
updated 1 day ago by 39k • written 3.7 years ago by • 0
0
votes
0
replies
1.1k
views
Job: Software Developer III - Genomics at The University of Alabama at Birmingham
software-developer omics genomics
updated 1 day ago by 39k • written 3.7 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Job: Software Developer I - Genomics at The University of Alabama at Birmingham
software-developer omics genomics
updated 1 day ago by 39k • written 3.7 years ago by ▴ 10
2
votes
0
replies
769
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics RNA-Seq genomics
updated 1 day ago by 39k • written 3.7 years ago by ★ 1.7k
1
vote
0
replies
1.0k
views
Job: Ph.D position in DNA data storage in France
phd dnastorage france
updated 1 day ago by 39k • written 3.7 years ago by ▴ 10
1
vote
0
replies
1.3k
views
Job: Variant Analyst-Genomics at UAB, Birmingham, Alabama
variant-analyst exome disease genomics
updated 1 day ago by 39k • written 3.7 years ago by ▴ 10
0
votes
0
replies
991
views
Job: Post-doc position in 3D chromatin organization
Hi-C super-resolution-microscopy ChIP-Seq
updated 1 day ago by 39k • written 3.7 years ago by • 0
0
votes
0
replies
688
views
Job: Postdoctoral researcher position in DNA data storage
DNAstorage postdoc france
updated 1 day ago by 39k • written 3.7 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Job: Postdoctoral Fellow at Center for Microbiome Innovation, University of California, San Diego
sequencing
updated 1 day ago by 39k • written 3.7 years ago by • 0
1
vote
0
replies
1.6k
views
Job: Research Scientist Bioinformatics at Evotec (Goettingen, Germany)
data-analysis multi-omics RNA-Seq Proteomics
updated 1 day ago by 39k • written 3.7 years ago by ★ 1.4k
0
votes
0
replies
651
views
Job: Permanent bioinformatics staff position in Uppsala, Sweden
RNA-Seq single-cell
updated 1 day ago by 39k • written 3.7 years ago by 7.9k
224 results • Page 2 of 5
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ChatGPT optimized for bioinformatics questions
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Answer: Extract sequences from a fastq file by a list of IDs
Answer: Extract sequences from a fastq file by a list of IDs
A: Collapse Repeated Reads
A: Extract Reads From A Bam File That Fall Within A Given Region
Comment: Masking before RNA-Seq Alignment and Gene Prediction in Plant Genomes
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Recent Replies
Comment: Which method is the best for using in "dba.count" in Diffbind R package by Rory Stark ★ 1.7k
If you are calling `dba.normalize()` directly, it must be called *after* calling `dba.count()`. `dba.count()` will apply the default normal…
Comment: switching from illumination to NEB prep kits by GenoMax 129k
If you are simply replacing the library prep kit then it will be compatible with normal illumina libraries. If there is a different adapter…
Comment: How to use R installed by conda instead of it installed by apt on Ubuntu by Zhichao • 0
yes, I have activated this conda environment. And the conda is in `PATH` . At first, I create a new conda environment `conda create -n ne…
Comment: Limma returned only positive logFC values by ATpoint 72k
Raw counts, raw meaning not manipulated by any transformation. See limma and edgeR manual, it clearly covers that for using limma-trend and…
Comment: Alternative To interactions comparison in limma in DESeq2 by ATpoint 72k
https://support.bioconductor.org/p/9143932/ -- see the lower parts where Michael Love answers, it comes down to numeric contrasts.
Comment: Limma returned only positive logFC values by melissachua90 ▴ 40
The `mat` is log2-normalized raw data. Is it feasible? Or should I feed in counts?
Comment: DESeq2 for different design and normalized counts by ATpoint 72k
Nope, please read the manual of DESeq2, it clearly tells to use raw counts. What "normalized counts" do you have exactly? limma-trend might…
Comment: How to use R installed by conda instead of it installed by apt on Ubuntu by ATpoint 72k
Did you activate your conda environment? Is conda in `PATH`? Please describe what you did.
Comment: Limma returned only positive logFC values by ATpoint 72k
Bottom line is, if you are using an intercept-free model (that is what `~0+...` is doing) then you have to use contrasts. In a "normal" mod…
Comment: Asking for feedback on a Python library for computing alignments by Alexander ▴ 70
Thanks for sharing ! It seems there is a problem to install on Kaggle cloud (like a Colab): I tried several ways: https://www.kaggle.com/co…
Comment: Masking before RNA-Seq Alignment and Gene Prediction in Plant Genomes by Darked89 4.4k
I am not sure what you gain by using hard masked genome for RNA-Seq mapping. There will be reads covering some introns. But if you mask rep…
Comment: Extract sequences from a fastq file by a list of IDs by mhpakdel96 • 0
Thanks a lot, it works
Comment: Differential protein expression analysis by dsull ★ 4.2k
I don't have a tutorial but see this paper I co-authored: https://pubs.acs.org/doi/abs/10.1021/acs.jproteome.0c00666 All of the upstream …
Comment: Differential protein expression analysis by Ribo ▴ 40
Thank you! Is there a recommended tutorial for proteomics analysis?
Comment: Limma returned only positive logFC values by melissachua90 ▴ 40
I clustered the samples into subtypes and am now comparing the differential expression across the subtypes.
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